omero@sripl-ig-oms01:/home/OMS/apps/OMERO/OMERO.server$ bin/omero web config apache Web template configuration requires fastcgi-tcp (Error Message I get when I try to follow the instructions) _________________________________________________________________________________________ root@sripl-ig-oms01:/etc/nginx/sites-enabled# apt-get install libapache2-mod-fastcgi Reading package lists... Done Building dependency tree Reading state information... Done libapache2-mod-fastcgi is already the newest version. (Can I use NGINX and apache at the same time ?) _____________________________________________________________________________________________ /etc/profile.d/omero-env.sh export JAVA_HOME=/usr/lib/jvm/java-7 export ICE_HOME=/usr/share/Ice-3.4.2 export POSTGRES_HOME=/usr/lib/postgresql/9.4 export OMERO_PREFIX=/home/OMS/apps/OMERO/OMERO.server export PATH=$PATH:$JAVA_HOME/bin:$ICE_HOME:$POSTGRES_HOME/bin:$OMERO_PREFIX/bin export PYTHONPATH=/usr/lib/pymodules/python2.7:$PYTHONPATH export LD_LIBRARY_PATH=/usr/share/java:/usr/lib:$LD_LIBRARY_PATH __________________________________________________________________________________________________ omero@sripl-ig-oms01:/home/OMS/apps/OMERO/OMERO.server$ bin/omero admin diagnostics ================================================================================ OMERO Diagnostics 5.1.2-ice34-b45 ================================================================================ WARNING:omero.util.UpgradeCheck:UPGRADE AVAILABLE:Please upgrade to 5.1.3 See http://trac.openmicroscopy.org.uk/omero for the latest version Commands: java -version 1.7.0 (/usr/bin/java -- 3 others) Commands: python -V 2.7.3 (/usr/bin/python) Commands: icegridnode --version 3.4.2 (/usr/bin/icegridnode) Commands: icegridadmin --version 3.4.2 (/usr/bin/icegridadmin) Commands: psql --version 9.4.4 (/usr/bin/psql -- 2 others) Server: icegridnode running Server: Blitz-0 active (pid = 7051, enabled) Server: DropBox active (pid = 7069, enabled) Server: FileServer active (pid = 7070, enabled) Server: Indexer-0 active (pid = 7073, enabled) Server: MonitorServer active (pid = 7074, enabled) Server: OMERO.Glacier2 active (pid = 7075, enabled) Server: OMERO.IceStorm active (pid = 7087, enabled) Server: PixelData-0 active (pid = 7097, enabled) Server: Processor-0 active (pid = 7104, enabled) Server: Tables-0 active (pid = 7103, enabled) Server: TestDropBox inactive (enabled) Log dir: /home/OMS/apps/OMERO/OMERO.server-5.1.2-ice34-b45/var/log exists Log files: Blitz-0.log 2.0 MB errors=261 warnings=15 Log files: DropBox.log 32.0 KB errors=18 warnings=16 Log files: FileServer.log 5.0 KB Log files: Indexer-0.log 496.0 KB errors=293 warnings=0 Log files: MonitorServer.log 13.0 KB Log files: OMEROweb.log 462.0 KB Log files: OMEROweb_request.log 0.0 KB Log files: PixelData-0.log 450.0 KB errors=254 warnings=0 Log files: Processor-0.log 201.0 KB errors=102 warnings=55 Log files: Tables-0.log 214.0 KB errors=102 warnings=56 Log files: TestDropBox.log n/a Log files: master.err 11.0 KB errors=3 warnings=33 Log files: master.out 0.0 KB Log files: Total size 4.87 MB Environment:OMERO_HOME=(unset) Environment:OMERO_NODE=(unset) Environment:OMERO_MASTER=(unset) Environment:OMERO_USERDIR=(unset) Environment:OMERO_TMPDIR=(unset) Environment:PATH=/usr/local/bin:/usr/bin:/bin:/usr/local/games:/usr/games:/usr/lib/jvm/java-6-sun/bin:/usr/share/Ice-3.4.2:/usr/lib/postgresql/9.1/bin:/home/OMS/apps/OMERO/OMERO.server/bin:/usr/lib/jvm/java-7/bin:/usr/share/Ice-3.4.2:/etc/postgresql/9.4/main/postgresql.conf/bin:/home/OMS/apps/OMERO/OMERO.server/bin Environment:PYTHONPATH=/usr/lib/pymodules/python2.7 Environment:ICE_HOME=/usr/share/Ice-3.4.2 Environment:LD_LIBRARY_PATH=/usr/share/java:/usr/lib:/usr/share/java:/usr/lib: Environment:DYLD_LIBRARY_PATH=(unset) OMERO SSL port:4064 OMERO TCP port:4063 OMERO data dir:'/home/OMS/OMERO.data' Exists? True Is writable? True OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0) JVM settings: Blitz -Xmx3799m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions JVM settings: Indexer -Xmx2532m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions JVM settings: Pixeldata -Xmx3799m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions JVM settings: Repository -Xmx2532m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions OMERO.web status... DEVELOPMENT: You will have to check status by hand! root@sripl-ig-oms01:/etc/profile.d# service omero-web status Status omero-web:OMERO.web status... DEVELOPMENT: You will have to check status by hand! ______________________________________________________________________________________________ omero@sripl-ig-oms01:/home/OMS/apps/OMERO/OMERO.server$ bin/omero admin start Server already running omero@sripl-ig-oms01:/home/OMS/apps/OMERO/OMERO.server$ bin/omero admin stop Waiting on shutdown. Use CTRL-C to exit .omero@sripl-ig-oms01:/home/OMS/apps/OMERO/OMERO.server$ bin/omero admin start No descriptor given. Using etc/grid/default.xml (copied the file from the zip) Waiting on startup. Use CTRL-C to exit omero@sripl-ig-oms01:/home/OMS/apps/OMERO/OMERO.server$ bin/omero login Server: [localhost:4064] Username: [omero] Password:xxxxxxxxxx Created session dd26991d-0a0f-489f-9fd1-0b6b8ca6e26c (username@localhost:4064). Idle timeout: 10 min. Current group: USR_MEMBER_groups ___________________________________________________________________________________________ id | currentpatch | currentversion | permissions | finished | message | previouspatch | previousversion | external_id ----+--------------+----------------+-------------+----------------------------+----------------------------------------------------------------------------------------------+---------------+-----------------+------------- 1 | 0 | OMERO5.0 | -52 | 2014-03-04 11:53:52.471713 | Database ready. | 0 | OMERO5.0 | 2 | 1 | OMERO5.1 | -52 | 2015-07-28 14:10:34.931488 | Database updated. | 0 | OMERO5.0 | 3 | 1 | OMERO5.1 | -52 | 2015-08-04 14:25:00.12515 | DB check DBEnumCheck: done for Bio-Formats revision 923bf020f921d8bfcef203f407fc94855e5b03f0 | 1 | OMERO5.1 | 4 | 1 | OMERO5.1 | -52 | 2015-08-04 14:25:00.162061 | DB check DBUnicodeUnitsCheck: done | 1 | OMERO5.1 | (4 rows) ___________________________________________________________________________________________ #/etc/apache2/mods-available AddHandler fastcgi-script .fcgi #FastCgiWrapper /usr/lib/apache2/suexec FastCgiIpcDir /var/lib/apache2/fastcgi ~ ______________________________________________________________________________________________________________________ # /etc/nginx/nginx.conf user www-data; worker_processes 4; pid /var/run/nginx.pid; events { worker_connections 768; # multi_accept on; } http { ## # Basic Settings ## sendfile on; tcp_nopush on; tcp_nodelay on; keepalive_timeout 65; types_hash_max_size 2048; # server_tokens off; # server_names_hash_bucket_size 64; # server_name_in_redirect off; include /etc/nginx/mime.types; default_type application/octet-stream; ## # Logging Settings ## access_log /var/log/nginx/access.log; error_log /var/log/nginx/error.log; ## # Gzip Settings ## gzip on; gzip_disable "msie6"; # gzip_vary on; # gzip_proxied any; # gzip_comp_level 6; # gzip_buffers 16 8k; # gzip_http_version 1.1; # gzip_types text/plain text/css application/json application/x-javascript text/xml application/xml application/xml+rss text/javascript; ## # nginx-naxsi config ## # Uncomment it if you installed nginx-naxsi ## #include /etc/nginx/naxsi_core.rules; ## # nginx-passenger config ## # Uncomment it if you installed nginx-passenger ## #passenger_root /usr; #passenger_ruby /usr/bin/ruby; ## # Virtual Host Configs ## include /etc/nginx/conf.d/*.conf; (nothing in conf.d) include /etc/nginx/sites-enabled/*;(ln - default attached) } #mail { # # See sample authentication script at: # # http://wiki.nginx.org/ImapAuthenticateWithApachePhpScript # # # auth_http localhost/auth.php; # # pop3_capabilities "TOP" "USER"; # # imap_capabilities "IMAP4rev1" "UIDPLUS"; # # server { # listen localhost:110; # protocol pop3; # proxy on; # } # # server { # listen localhost:143; # protocol imap; # proxy on; # } #} ____________________________________________________________________________________________________________ # /etc/nginx/sites-enabled/default # You may add here your # server { # ... # } # statements for each of your virtual hosts to this file ## # You should look at the following URL's in order to grasp a solid understanding # of Nginx configuration files in order to fully unleash the power of Nginx. # http://wiki.nginx.org/Pitfalls # http://wiki.nginx.org/QuickStart # http://wiki.nginx.org/Configuration # # Generally, you will want to move this file somewhere, and start with a clean # file but keep this around for reference. Or just disable in sites-enabled. # # Please see /usr/share/doc/nginx-doc/examples/ for more detailed examples. ## server { #listen 80; ## listen for ipv4; this line is default and implied #listen [::]:80 default_server ipv6only=on; ## listen for ipv6 root /usr/share/nginx/www; index index.html index.htm; # Make site accessible from http://localhost/ server_name localhost; location / { # First attempt to serve request as file, then # as directory, then fall back to displaying a 404. try_files $uri $uri/ /index.html; # Uncomment to enable naxsi on this location # include /etc/nginx/naxsi.rules } location /doc/ { alias /usr/share/doc/; autoindex on; allow 127.0.0.1; allow ::1; deny all; } # Only for nginx-naxsi used with nginx-naxsi-ui : process denied requests #location /RequestDenied { # proxy_pass http://127.0.0.1:8080; #} #error_page 404 /404.html; # redirect server error pages to the static page /50x.html # #error_page 500 502 503 504 /50x.html; #location = /50x.html { # root /usr/share/nginx/www; #} # pass the PHP scripts to FastCGI server listening on 127.0.0.1:9000 # #location ~ \.php$ { # fastcgi_split_path_info ^(.+\.php)(/.+)$; # # NOTE: You should have "cgi.fix_pathinfo = 0;" in php.ini # # # With php5-cgi alone: # fastcgi_pass 127.0.0.1:9000; # # With php5-fpm: # fastcgi_pass unix:/var/run/php5-fpm.sock; # fastcgi_index index.php; # include fastcgi_params; #} # deny access to .htaccess files, if Apache's document root # concurs with nginx's one # #location ~ /\.ht { # deny all; #} } # another virtual host using mix of IP-, name-, and port-based configuration # #server { # listen 8000; # listen somename:8080; # server_name somename alias another.alias; # root html; # index index.html index.htm; # # location / { # try_files $uri $uri/ =404; # } #} # HTTPS server # #server { # listen 443; # server_name localhost; # # root html; # index index.html index.htm; # # ssl on; # ssl_certificate cert.pem; # ssl_certificate_key cert.key; # # ssl_session_timeout 5m; # # # ssl_protocols SSLv3 TLSv1; # ssl_ciphers ALL:!ADH:!EXPORT56:RC4+RSA:+HIGH:+MEDIUM:+LOW:+SSLv3:+EXP; # ssl_prefer_server_ciphers on; # # location / { # try_files $uri $uri/ =404; # } #} _________________________________________________________________________________________________ omero@sripl-ig-oms01:/home/OMS/apps/OMERO/OMERO.server$ bin/omero web config apache Web template configuration requires fastcgi-tcp ____________________________________________________________________________________________________ #Blitz-0.log 2015-08-07 13:22:11,146 INFO [o.services.blitz.util.BlitzConfiguration] ( main) Shutting down Ice.Communicator 2015-08-07 13:22:11,159 INFO [ ome.services.util.ServerVersionCheck] ( main) ------------------------------------------------- 2015-08-07 13:22:11,159 INFO [ ome.services.util.ServerVersionCheck] ( main) Stopping OMERO... 2015-08-07 13:22:11,159 INFO [ ome.services.util.ServerVersionCheck] ( main) ------------------------------------------------- 2015-08-07 13:22:11,159 INFO [ ome.services.pixeldata.PixelDataThread] ( main) Shutting down PixelDataThread 2015-08-07 13:22:11,159 INFO [ ome.services.eventlogs.EventLogQueue] ( main) Shutting down EventLogLoader 2015-08-07 13:22:11,159 INFO [ ome.services.fulltext.FullTextThread] ( main) Shutting down Full-Text Indexer 2015-08-07 13:22:11,159 INFO [ ome.services.eventlogs.EventLogQueue] ( main) Shutting down EventLogLoader 2015-08-07 13:22:11,160 INFO [ o.s.scheduler.SchedulerFactoryBean] ( main) Shutting down Quartz Scheduler 2015-08-07 13:22:11,168 INFO [.s.ShutdownSafeEhcacheManagerFactoryBean] ( main) Shutting down EHCache CacheManager 2015-08-07 13:22:11,169 INFO [ ome.services.blitz.Entry] ( main) Finished shutdown. 2015-08-07 13:23:22,853 INFO [ ome.services.blitz.Entry] ( main) Creating OMERO.blitz. Please wait... 2015-08-07 13:23:24,603 INFO [.s.ShutdownSafeEhcacheManagerFactoryBean] ( main) Initializing EHCache CacheManager 2015-08-07 13:23:25,087 INFO [ ome.services.util.DBPatchCheck] ( main) Verified database patch: OMERO5.1__1 2015-08-07 13:23:25,127 INFO [ ome.services.util.DBUserCheck] ( main) User root.id = 0 2015-08-07 13:23:25,128 INFO [ ome.services.util.DBUserCheck] ( main) User guest.id = 1 2015-08-07 13:23:25,129 INFO [ ome.services.util.DBUserCheck] ( main) Group system.id = 0 2015-08-07 13:23:25,129 INFO [ ome.services.util.DBUserCheck] ( main) Group user.id = 1 2015-08-07 13:23:25,129 INFO [ ome.services.util.DBUserCheck] ( main) Group guest.id = 2 2015-08-07 13:23:27,841 INFO [ ome.services.fulltext.FullTextAnalyzer] ( main) Initialized FullTextAnalyzer 2015-08-07 13:23:31,399 INFO [ ome.services.db.DatabaseIdentity] ( main) Using LSID format: urn:lsid:export.openmicroscopy.org:%s:bd756a09-5b59-4060-abd4-4cec15f73977_%s%s 2015-08-07 13:23:32,568 INFO [ org.perf4j.TimingLogger] ( main) start[1438968211463] time[1105] tag[ome.io.nio.SimpleBackOff.256X256] 2015-08-07 13:23:32,721 INFO [ org.perf4j.TimingLogger] ( main) start[1438968212568] time[152] tag[ome.io.nio.SimpleBackOff.256X256] 2015-08-07 13:23:32,797 INFO [ org.perf4j.TimingLogger] ( main) start[1438968212721] time[75] tag[ome.io.nio.SimpleBackOff.256X256] 2015-08-07 13:23:32,840 INFO [ org.perf4j.TimingLogger] ( main) start[1438968212797] time[42] tag[ome.io.nio.SimpleBackOff.256X256] 2015-08-07 13:23:32,884 INFO [ org.perf4j.TimingLogger] ( main) start[1438968212840] time[43] tag[ome.io.nio.SimpleBackOff.256X256] 2015-08-07 13:23:32,933 INFO [ org.perf4j.TimingLogger] ( main) start[1438968212886] time[46] tag[ome.io.nio.SimpleBackOff.256X256] 2015-08-07 13:23:32,979 INFO [ org.perf4j.TimingLogger] ( main) start[1438968212933] time[45] tag[ome.io.nio.SimpleBackOff.256X256] 2015-08-07 13:23:33,023 INFO [ org.perf4j.TimingLogger] ( main) start[1438968212979] time[44] tag[ome.io.nio.SimpleBackOff.256X256] 2015-08-07 13:23:33,067 INFO [ org.perf4j.TimingLogger] ( main) start[1438968213023] time[43] tag[ome.io.nio.SimpleBackOff.256X256] 2015-08-07 13:23:33,112 INFO [ org.perf4j.TimingLogger] ( main) start[1438968213068] time[43] tag[ome.io.nio.SimpleBackOff.256X256] 2015-08-07 13:23:33,155 INFO [ org.perf4j.TimingLogger] ( main) start[1438968213112] time[43] tag[ome.io.nio.SimpleBackOff.256X256] 2015-08-07 13:23:33,198 INFO [ org.perf4j.TimingLogger] ( main) start[1438968213156] time[42] tag[ome.io.nio.SimpleBackOff.256X256] 2015-08-07 13:23:33,241 INFO [ org.perf4j.TimingLogger] ( main) start[1438968213198] time[42] tag[ome.io.nio.SimpleBackOff.256X256] 2015-08-07 13:23:33,286 INFO [ org.perf4j.TimingLogger] ( main) start[1438968213241] time[44] tag[ome.io.nio.SimpleBackOff.256X256] 2015-08-07 13:23:33,331 INFO [ org.perf4j.TimingLogger] ( main) start[1438968213286] time[44] tag[ome.io.nio.SimpleBackOff.256X256] 2015-08-07 13:23:33,379 INFO [ org.perf4j.TimingLogger] ( main) start[1438968213331] time[47] tag[ome.io.nio.SimpleBackOff.256X256] 2015-08-07 13:23:33,422 INFO [ org.perf4j.TimingLogger] ( main) start[1438968213379] time[43] tag[ome.io.nio.SimpleBackOff.256X256] 2015-08-07 13:23:33,465 INFO [ org.perf4j.TimingLogger] ( main) start[1438968213422] time[42] tag[ome.io.nio.SimpleBackOff.256X256] 2015-08-07 13:23:33,509 INFO [ org.perf4j.TimingLogger] ( main) start[1438968213465] time[43] tag[ome.io.nio.SimpleBackOff.256X256] 2015-08-07 13:23:33,551 INFO [ org.perf4j.TimingLogger] ( main) start[1438968213509] time[42] tag[ome.io.nio.SimpleBackOff.256X256] 2015-08-07 13:23:33,562 INFO [ ome.io.nio.PixelsService] ( main) Using Bio-Formats Cache: /home/OMS/OMERO.data/BioFormatsCache 2015-08-07 13:23:33,562 INFO [ ome.io.nio.PixelsService] ( main) PixelsService(path=/home/OMS/OMERO.data, resolver=ome.services.OmeroFilePathResolver@4cb22a4f, backoff=ome.io.nio.SimpleBackOff(factor=43.2), sizes=ome.io.nio.ConfiguredTileSizes(w=256,h=256,W=3192,H=3192)) 2015-08-07 13:23:34,123 INFO [ ome.services.fulltext.FullTextThread] ( main) Initializing Full-Text Indexer 2015-08-07 13:23:34,140 INFO [ ome.services.pixeldata.PixelDataThread] ( main) Initializing PixelDataThread (create events only) 2015-08-07 13:23:34,153 INFO [ ome.services.util.JvmSettingsCheck] ( main) Java version: 1.7.0_80; Linux; amd64; 3.2.0-4-amd64 2015-08-07 13:23:34,153 INFO [ ome.services.util.JvmSettingsCheck] ( main) Max Memory (MB): = 3378 2015-08-07 13:23:34,153 INFO [ ome.services.util.JvmSettingsCheck] ( main) OS Memory (MB): = 24155 2015-08-07 13:23:34,154 INFO [ ome.services.util.JvmSettingsCheck] ( main) Processors: = 8 2015-08-07 13:23:34,179 INFO [ ome.services.util.ServerVersionCheck] ( main) ------------------------------------------------- 2015-08-07 13:23:34,179 INFO [ ome.services.util.ServerVersionCheck] ( main) OMERO Version: 5.1.2-ice34-b45 Ready. 2015-08-07 13:23:34,179 INFO [ ome.services.util.ServerVersionCheck] ( main) ------------------------------------------------- 2015-08-07 13:23:34,626 WARN [ ome.system.UpgradeCheck] ( main) UPGRADE AVAILABLE:Please upgrade to 5.1.3 See http://trac.openmicroscopy.org.uk/omero for the latest version 2015-08-07 13:23:34,636 INFO [ ome.tools.hibernate.ExtendedMetadata] ( main) Calculating ExtendedMetadata... 2015-08-07 13:23:36,179 INFO [ ome.services.graphs.GraphPathBean] ( main) initialized graph path bean with 702 properties 2015-08-07 13:23:36,185 INFO [ o.s.scheduler.SchedulerFactoryBean] ( main) Starting Quartz Scheduler now 2015-08-07 13:23:36,198 INFO [ ome.services.util.ServiceHandler] ( main) Executor.doWork -- ome.services.util.NamespaceCheck.namespaceCheck[] 2015-08-07 13:23:36,199 INFO [ ome.services.util.ServiceHandler] ( main) Args: [null, InternalSF@2117096904] 2015-08-07 13:23:36,492 INFO [ ome.security.basic.EventHandler] ( main) Auth: user=0,group=0,event=22401(Internal),sess=e1c1130a-1d61-4afd-9682-27bcd989620f 2015-08-07 13:23:36,865 INFO [ org.perf4j.TimingLogger] ( main) start[1438968216199] time[666] tag[omero.call.success.ome.services.util.NamespaceCheck$1.doWork] 2015-08-07 13:23:36,866 INFO [ ome.services.util.ServiceHandler] ( main) Rslt: null 2015-08-07 13:23:37,536 INFO [o.services.blitz.util.BlitzConfiguration] ( main) Initializing Ice.Communicator 2015-08-07 13:23:37,661 INFO [ ome.services.blitz.fire.Ring] ( main) Checking cluster 2015-08-07 13:23:37,678 INFO [ ome.services.blitz.fire.Registry] ( main) Found 0 cluster node(s) : [] 2015-08-07 13:23:37,679 INFO [ ome.services.blitz.fire.Ring] ( main) Got 0 cluster uuids : [] 2015-08-07 13:23:37,680 INFO [ ome.services.util.ServiceHandler] ( main) Executor.doWork -- ome.services.blitz.fire.Ring.getManagerList[] 2015-08-07 13:23:37,680 INFO [ ome.services.util.ServiceHandler] ( main) Args: [null, InternalSF@2117096904] 2015-08-07 13:23:37,685 INFO [ ome.security.basic.EventHandler] ( main) Auth: user=0,group=0,event=null(Internal),sess=e1c1130a-1d61-4afd-9682-27bcd989620f 2015-08-07 13:23:37,717 INFO [ org.perf4j.TimingLogger] ( main) start[1438968217680] time[37] tag[omero.call.success.ome.services.blitz.fire.Ring$2.doWork] 2015-08-07 13:23:37,717 INFO [ ome.services.util.ServiceHandler] ( main) Rslt: (dc45467f-4af3-472e-adbd-bdab4fb23e04) 2015-08-07 13:23:37,718 INFO [ ome.services.blitz.fire.Ring] ( main) Purging node: dc45467f-4af3-472e-adbd-bdab4fb23e04 2015-08-07 13:23:37,805 INFO [ ome.services.util.ServiceHandler] ( main) Executor.doWork -- ome.services.blitz.fire.Ring.executeUpdate - set closed = now()[] 2015-08-07 13:23:37,806 INFO [ ome.services.util.ServiceHandler] ( main) Args: [null, InternalSF@2117096904] 2015-08-07 13:23:37,835 INFO [ ome.security.basic.EventHandler] ( main) Auth: user=0,group=0,event=22402(Internal),sess=e1c1130a-1d61-4afd-9682-27bcd989620f 2015-08-07 13:23:37,861 INFO [ org.perf4j.TimingLogger] ( main) start[1438968217806] time[54] tag[omero.call.success.ome.services.blitz.fire.Ring$3.doWork] 2015-08-07 13:23:37,861 INFO [ ome.services.util.ServiceHandler] ( main) Rslt: 0 2015-08-07 13:23:37,861 INFO [ ome.services.blitz.fire.Ring] ( main) Removed 0 entries with value dc45467f-4af3-472e-adbd-bdab4fb23e04 2015-08-07 13:23:37,862 INFO [ ome.services.util.ServiceHandler] ( main) Executor.doWork -- ome.services.blitz.fire.Ring.setManagerDown[] 2015-08-07 13:23:37,862 INFO [ ome.services.util.ServiceHandler] ( main) Args: [null, InternalSF@2117096904] 2015-08-07 13:23:37,885 INFO [ ome.security.basic.EventHandler] ( main) Auth: user=0,group=0,event=22403(Internal),sess=e1c1130a-1d61-4afd-9682-27bcd989620f 2015-08-07 13:23:37,927 INFO [ org.perf4j.TimingLogger] ( main) start[1438968217862] time[64] tag[omero.call.success.ome.services.blitz.fire.Ring$4.doWork] 2015-08-07 13:23:37,944 INFO [ ome.services.util.ServiceHandler] ( main) Rslt: 1 2015-08-07 13:23:37,945 INFO [ ome.services.blitz.fire.Ring] ( main) Removed manager: dc45467f-4af3-472e-adbd-bdab4fb23e04 2015-08-07 13:23:37,945 INFO [ ome.services.blitz.fire.Ring] ( main) handleRingShutdown: dc45467f-4af3-472e-adbd-bdab4fb23e04 2015-08-07 13:23:37,946 INFO [ ome.services.util.ServiceHandler] ( main) Executor.doWork -- ome.services.blitz.fire.Ring.addManager[] 2015-08-07 13:23:37,946 INFO [ ome.services.util.ServiceHandler] ( main) Args: [null, InternalSF@2117096904] 2015-08-07 13:23:37,974 INFO [ ome.security.basic.EventHandler] ( main) Auth: user=0,group=0,event=22404(Internal),sess=e1c1130a-1d61-4afd-9682-27bcd989620f 2015-08-07 13:23:37,981 INFO [ ome.security.basic.CurrentDetails] ( main) Adding log:INSERT,class ome.model.meta.Node,1351 2015-08-07 13:23:38,011 INFO [ org.perf4j.TimingLogger] ( main) start[1438968217946] time[64] tag[omero.call.success.ome.services.blitz.fire.Ring$5.doWork] 2015-08-07 13:23:38,011 INFO [ ome.services.util.ServiceHandler] ( main) Rslt: ome.model.meta.Node:Id_1351 2015-08-07 13:23:38,030 INFO [ ome.services.blitz.fire.Registry] ( main) Added ClusterNode/e1c1130a-1d61-4afd-9682-27bcd989620f to registry 2015-08-07 13:23:38,538 INFO [ o.s.blitz.repo.AbstractRepositoryI] ( main) Initializing repository in /home/OMS/OMERO.data 2015-08-07 13:23:38,575 INFO [o.services.blitz.repo.ManagedRepositoryI] ( main) Repository template: %user%_%userId%//%year%-%month%/%day%/%time% 2015-08-07 13:23:38,576 INFO [ o.s.blitz.repo.AbstractRepositoryI] ( main) Initializing repository in /home/OMS/OMERO.data/ManagedRepository 2015-08-07 13:23:38,592 INFO [ o.s.blitz.repo.AbstractRepositoryI] ( main) Initializing repository in /home/OMS/apps/OMERO/OMERO.server-5.1.2-ice34-b45/./lib/scripts 2015-08-07 13:23:38,813 INFO [ ome.services.util.ServiceHandler] (2-thread-3) Executor.doWork -- ome.services.blitz.repo.LegacyRepositoryI.takeover[] 2015-08-07 13:23:38,813 INFO [ ome.services.util.ServiceHandler] (2-thread-2) Executor.doWork -- ome.services.blitz.repo.LegacyRepositoryI.takeover[] 2015-08-07 13:23:38,813 INFO [ ome.services.util.ServiceHandler] (2-thread-4) Executor.doWork -- ome.services.blitz.repo.ScriptRepositoryI.takeover[] 2015-08-07 13:23:38,813 INFO [ ome.services.util.ServiceHandler] (2-thread-2) Args: [null, InternalSF@2117096904] 2015-08-07 13:23:38,813 INFO [ ome.services.util.ServiceHandler] (2-thread-4) Args: [null, InternalSF@2117096904] 2015-08-07 13:23:38,815 INFO [ ome.services.util.ServiceHandler] (2-thread-3) Args: [null, InternalSF@2117096904] 2015-08-07 13:23:38,839 INFO [ ome.security.basic.EventHandler] (2-thread-4) Auth: user=0,group=0,event=22405(Internal),sess=e1c1130a-1d61-4afd-9682-27bcd989620f 2015-08-07 13:23:38,873 INFO [ ome.security.basic.EventHandler] (2-thread-2) Auth: user=0,group=0,event=22406(Internal),sess=e1c1130a-1d61-4afd-9682-27bcd989620f 2015-08-07 13:23:38,882 INFO [ o.s.blitz.repo.AbstractRepositoryI] (2-thread-2) Opened repository OMERO.data (uuid=57ebc370-b507-491d-9bc7-bf66fd19201b) 2015-08-07 13:23:38,886 INFO [ o.s.blitz.repo.AbstractRepositoryI] (2-thread-4) Opened repository scripts (uuid=ScriptRepo) 2015-08-07 13:23:38,886 INFO [ ome.services.blitz.util.CheckAllJobs] ( Thread-9) Waiting 120 secs. for callbacks 2015-08-07 13:23:38,887 INFO [ ome.services.scripts.ScriptRepoHelper] ( main) Registering JythonScripts: WildcardFileFilter(*.jy) 2015-08-07 13:23:38,892 INFO [ ome.services.scripts.ScriptRepoHelper] ( main) Registering PythonScripts: WildcardFileFilter(*.py) 2015-08-07 13:23:38,892 INFO [ ome.services.scripts.ScriptRepoHelper] ( main) Registering MatlabScripts: WildcardFileFilter(*.m) 2015-08-07 13:23:38,900 INFO [ ome.security.basic.EventHandler] (2-thread-3) Auth: user=0,group=0,event=22407(Internal),sess=e1c1130a-1d61-4afd-9682-27bcd989620f 2015-08-07 13:23:38,911 INFO [ o.s.blitz.repo.AbstractRepositoryI] (2-thread-3) Opened repository ManagedRepository (uuid=b866c0b9-2553-45ec-8c56-8904207b35ac) 2015-08-07 13:23:38,922 INFO [ ome.services.blitz.fire.Registry] (2-thread-2) Updated InternalRepository-57ebc370-b507-491d-9bc7-bf66fd19201b in registry 2015-08-07 13:23:38,930 INFO [ ome.services.blitz.fire.Registry] (2-thread-4) Updated InternalRepository-ScriptRepo in registry 2015-08-07 13:23:38,938 INFO [ ome.services.blitz.fire.Registry] (2-thread-3) Updated InternalRepository-b866c0b9-2553-45ec-8c56-8904207b35ac in registry 2015-08-07 13:23:38,947 INFO [ ome.services.blitz.fire.Registry] (2-thread-2) Updated PublicRepository-57ebc370-b507-491d-9bc7-bf66fd19201b in registry 2015-08-07 13:23:38,947 INFO [ ome.services.util.ServiceHandler] ( main) Executor.doWork -- ome.services.scripts.ScriptRepoHelper.loadAll[true] 2015-08-07 13:23:38,948 INFO [ ome.services.util.ServiceHandler] ( main) Args: [null, InternalSF@2117096904] 2015-08-07 13:23:38,955 INFO [ ome.services.blitz.fire.Registry] (2-thread-4) Updated PublicRepository-ScriptRepo in registry 2015-08-07 13:23:38,955 INFO [ o.s.blitz.repo.AbstractRepositoryI] (2-thread-2) Repository now active 2015-08-07 13:23:38,956 INFO [ o.s.blitz.repo.AbstractRepositoryI] (2-thread-4) Repository now active 2015-08-07 13:23:38,977 INFO [ org.perf4j.TimingLogger] (2-thread-4) start[1438968218813] time[163] tag[omero.call.success.ome.services.blitz.repo.AbstractRepositoryI$GetOrCreateRepo.doWork] 2015-08-07 13:23:38,977 INFO [ ome.services.util.ServiceHandler] (2-thread-4) Rslt: ome.model.core.OriginalFile:Id_1 2015-08-07 13:23:38,978 INFO [ ome.services.util.ServiceHandler] (2-thread-4) Executor.doWork -- ome.services.blitz.repo.ScriptRepositoryI.getDescription[1] 2015-08-07 13:23:38,978 INFO [ ome.services.util.ServiceHandler] (2-thread-4) Args: [null, InternalSF@2117096904] 2015-08-07 13:23:38,982 INFO [ ome.security.basic.EventHandler] (2-thread-4) Auth: user=0,group=0,event=null(Internal),sess=e1c1130a-1d61-4afd-9682-27bcd989620f 2015-08-07 13:23:38,988 INFO [ ome.services.blitz.fire.Registry] (2-thread-3) Updated PublicRepository-b866c0b9-2553-45ec-8c56-8904207b35ac in registry 2015-08-07 13:23:38,989 INFO [ o.s.blitz.repo.AbstractRepositoryI] (2-thread-3) Repository now active 2015-08-07 13:23:38,997 INFO [ ome.security.basic.EventHandler] ( main) Auth: user=0,group=0,event=22408(Internal),sess=e1c1130a-1d61-4afd-9682-27bcd989620f 2015-08-07 13:23:38,998 INFO [ org.perf4j.TimingLogger] (2-thread-4) start[1438968218979] time[19] tag[omero.call.success.ome.services.blitz.repo.AbstractRepositoryI$1.doWork] 2015-08-07 13:23:38,998 INFO [ ome.services.util.ServiceHandler] (2-thread-4) Rslt: ome.model.core.OriginalFile:Id_1 2015-08-07 13:23:39,011 INFO [ org.perf4j.TimingLogger] (2-thread-2) start[1438968218813] time[197] tag[omero.call.success.ome.services.blitz.repo.AbstractRepositoryI$GetOrCreateRepo.doWork] 2015-08-07 13:23:39,011 INFO [ ome.services.util.ServiceHandler] (2-thread-2) Rslt: ome.model.core.OriginalFile:Id_3 2015-08-07 13:23:39,012 INFO [ ome.services.util.ServiceHandler] (2-thread-2) Executor.doWork -- ome.services.blitz.repo.LegacyRepositoryI.getDescription[3] 2015-08-07 13:23:39,012 INFO [ ome.services.util.ServiceHandler] (2-thread-2) Args: [null, InternalSF@2117096904] 2015-08-07 13:23:39,016 INFO [ ome.security.basic.EventHandler] (2-thread-2) Auth: user=0,group=0,event=null(Internal),sess=e1c1130a-1d61-4afd-9682-27bcd989620f 2015-08-07 13:23:39,034 INFO [ org.perf4j.TimingLogger] (2-thread-3) start[1438968218815] time[219] tag[omero.call.success.ome.services.blitz.repo.AbstractRepositoryI$GetOrCreateRepo.doWork] 2015-08-07 13:23:39,035 INFO [ ome.services.util.ServiceHandler] (2-thread-3) Rslt: ome.model.core.OriginalFile:Id_2 2015-08-07 13:23:39,035 INFO [ ome.services.util.ServiceHandler] (2-thread-3) Executor.doWork -- ome.services.blitz.repo.LegacyRepositoryI.getDescription[2] 2015-08-07 13:23:39,035 INFO [ ome.services.util.ServiceHandler] (2-thread-3) Args: [null, InternalSF@2117096904] 2015-08-07 13:23:39,040 INFO [ ome.security.basic.EventHandler] (2-thread-3) Auth: user=0,group=0,event=null(Internal),sess=e1c1130a-1d61-4afd-9682-27bcd989620f 2015-08-07 13:23:39,043 INFO [ org.perf4j.TimingLogger] (2-thread-2) start[1438968219012] time[30] tag[omero.call.success.ome.services.blitz.repo.AbstractRepositoryI$1.doWork] 2015-08-07 13:23:39,043 INFO [ ome.services.util.ServiceHandler] (2-thread-2) Rslt: ome.model.core.OriginalFile:Id_3 2015-08-07 13:23:39,066 INFO [ org.perf4j.TimingLogger] (2-thread-3) start[1438968219035] time[30] tag[omero.call.success.ome.services.blitz.repo.AbstractRepositoryI$1.doWork] 2015-08-07 13:23:39,066 INFO [ ome.services.util.ServiceHandler] (2-thread-3) Rslt: ome.model.core.OriginalFile:Id_2 2015-08-07 13:23:39,181 INFO [ org.perf4j.TimingLogger] ( main) start[1438968218948] time[232] tag[omero.call.success.ome.services.scripts.ScriptRepoHelper$5.doWork] 2015-08-07 13:23:39,181 INFO [ ome.services.util.ServiceHandler] ( main) Rslt: (ome.model.core.OriginalFile:Id_1201, ome.model.core.OriginalFile:Id_1202, ome.model.core.OriginalFile:Id_1203, ... 13 more) 2015-08-07 13:23:39,182 INFO [ ome.services.blitz.Entry] ( main) OMERO.blitz now accepting connections. 2015-08-07 13:23:40,680 INFO [ ome.services.util.ServiceHandler] (l.Server-2) Executor.doWork -- ome.services.sessions.SessionManagerImpl.createSession[] 2015-08-07 13:23:40,680 INFO [ ome.services.util.ServiceHandler] (l.Server-2) Args: [null, InternalSF@2117096904] 2015-08-07 13:23:40,684 INFO [ ome.security.basic.BasicEventContext] (l.Server-2) cctx: group=0 2015-08-07 13:23:40,700 INFO [ ome.security.basic.EventHandler] (l.Server-2) Auth: user=0,group=0,event=22409(Sessions),sess=e1c1130a-1d61-4afd-9682-27bcd989620f 2015-08-07 13:23:40,753 INFO [ ome.security.basic.CurrentDetails] (l.Server-2) Adding log:INSERT,class ome.model.meta.Session,4286 2015-08-07 13:23:40,844 INFO [ org.perf4j.TimingLogger] (l.Server-2) start[1438968220680] time[163] tag[omero.call.success.ome.services.sessions.SessionManagerImpl$2.doWork] 2015-08-07 13:23:40,844 INFO [ ome.services.util.ServiceHandler] (l.Server-2) Rslt: (ome.model.meta.Experimenter:Id_0, ome.model.meta.ExperimenterGroup:Id_0, (0, 1), ... 4 more) 2015-08-07 13:23:40,880 INFO [ ome.services.blitz.fire.SessionManagerI] (l.Server-2) Created session ServiceFactoryI(session-0eac3aad-871f-427f-ba60-bf7c0ac87192/d4f24a3a-77fe-4107-b0ef-8bbab2912f77) for user root (agent=Python service) 2015-08-07 13:23:40,919 INFO [ omero.cmd.SessionI] (l.Server-3) Added servant to adapter: d4f24a3a-77fe-4107-b0ef-8bbab2912f77/0eac3aad-871f-427f-ba60-bf7c0ac87192omero.api.IConfig(omero.api._IConfigTie@30e94f1e) 2015-08-07 13:23:40,964 INFO [ ome.services.util.ServiceHandler] (l.Server-8) Meth: interface ome.api.IConfig.getConfigValue 2015-08-07 13:23:40,964 INFO [ ome.services.util.ServiceHandler] (l.Server-8) Args: [omero.data.dir] 2015-08-07 13:23:40,984 INFO [ ome.security.basic.EventHandler] (l.Server-8) Auth: user=0,group=0,event=22410(User),sess=d4f24a3a-77fe-4107-b0ef-8bbab2912f77 2015-08-07 13:23:41,015 INFO [ org.perf4j.TimingLogger] (l.Server-8) start[1438968220965] time[50] tag[omero.call.success.ome.logic.ConfigImpl.getConfigValue] 2015-08-07 13:23:41,015 INFO [ ome.services.util.ServiceHandler] (l.Server-8) Rslt: /home/OMS/OMERO.data 2015-08-07 13:23:41,017 INFO [o.services.sessions.SessionContext$Count] (l.Server-0) -Reference count: d4f24a3a-77fe-4107-b0ef-8bbab2912f77=0 2015-08-07 13:23:41,018 INFO [ omero.cmd.SessionI] (l.Server-0) doDestroy(ServiceFactoryI(session-0eac3aad-871f-427f-ba60-bf7c0ac87192/d4f24a3a-77fe-4107-b0ef-8bbab2912f77)) 2015-08-07 13:23:41,019 INFO [ omero.cmd.SessionI] (l.Server-0) Unregistered servant:d4f24a3a-77fe-4107-b0ef-8bbab2912f77/0eac3aad-871f-427f-ba60-bf7c0ac87192omero.api.IConfig(omero.api._IConfigTie@30e94f1e) 2015-08-07 13:23:41,019 INFO [ omero.cmd.SessionI] (l.Server-0) Removed servant from adapter: 0eac3aad-871f-427f-ba60-bf7c0ac87192omero.api.IConfig 2015-08-07 13:23:41,019 INFO [ome.services.sessions.SessionManagerImpl] (l.Server-0) closeSession called and no more references: d4f24a3a-77fe-4107-b0ef-8bbab2912f77 2015-08-07 13:23:41,019 INFO [ome.services.sessions.state.SessionCache] (l.Server-0) Destroying session d4f24a3a-77fe-4107-b0ef-8bbab2912f77 due to : Remove session called 2015-08-07 13:23:41,019 INFO [ org.perf4j.TimingLogger] (l.Server-0) start[1438968220847] time[172] tag[omero.session] 2015-08-07 13:23:47,678 INFO [ ome.services.util.ServiceHandler] (l.Server-1) Executor.doWork -- ome.services.sessions.SessionManagerImpl.createSession[] 2015-08-07 13:23:47,678 INFO [ ome.services.util.ServiceHandler] (l.Server-5) Executor.doWork -- ome.services.sessions.SessionManagerImpl.createSession[] 2015-08-07 13:23:47,678 INFO [ ome.services.util.ServiceHandler] (l.Server-1) Args: [null, InternalSF@2117096904] 2015-08-07 13:23:47,679 INFO [ ome.services.util.ServiceHandler] (l.Server-5) Args: [null, InternalSF@2117096904] 2015-08-07 13:23:47,683 INFO [ ome.security.basic.BasicEventContext] (l.Server-1) cctx: group=0 2015-08-07 13:23:47,683 INFO [ ome.security.basic.BasicEventContext] (l.Server-5) cctx: group=0 2015-08-07 13:23:47,704 INFO [ ome.security.basic.EventHandler] (l.Server-1) Auth: user=0,group=0,event=22412(Sessions),sess=e1c1130a-1d61-4afd-9682-27bcd989620f 2015-08-07 13:23:47,707 INFO [ ome.security.basic.EventHandler] (l.Server-5) Auth: user=0,group=0,event=22411(Sessions),sess=e1c1130a-1d61-4afd-9682-27bcd989620f 2015-08-07 13:23:47,730 INFO [ ome.security.basic.CurrentDetails] (l.Server-1) Adding log:INSERT,class ome.model.meta.Session,4287 2015-08-07 13:23:47,732 INFO [ ome.security.basic.CurrentDetails] (l.Server-5) Adding log:INSERT,class ome.model.meta.Session,4288 2015-08-07 13:23:47,774 INFO [ org.perf4j.TimingLogger] (l.Server-1) start[1438968227679] time[95] tag[omero.call.success.ome.services.sessions.SessionManagerImpl$2.doWork] 2015-08-07 13:23:47,774 INFO [ ome.services.util.ServiceHandler] (l.Server-1) Rslt: (ome.model.meta.Experimenter:Id_0, ome.model.meta.ExperimenterGroup:Id_0, (0, 1), ... 4 more) 2015-08-07 13:23:47,776 INFO [ ome.services.blitz.fire.SessionManagerI] (l.Server-1) Created session ServiceFactoryI(session-1e252e16-b755-4c5c-bc88-d7f8c16a0c78/85f6e8ea-e5df-45cd-85bf-75ce199892f8) for user root (agent=Python service) 2015-08-07 13:23:47,782 INFO [ org.perf4j.TimingLogger] (l.Server-5) start[1438968227679] time[103] tag[omero.call.success.ome.services.sessions.SessionManagerImpl$2.doWork] 2015-08-07 13:23:47,783 INFO [ ome.services.util.ServiceHandler] (l.Server-5) Rslt: (ome.model.meta.Experimenter:Id_0, ome.model.meta.ExperimenterGroup:Id_0, (0, 1), ... 4 more) 2015-08-07 13:23:47,784 INFO [ ome.services.blitz.fire.SessionManagerI] (l.Server-5) Created session ServiceFactoryI(session-4a25b3d3-a5a4-4e5a-aeb4-c4b63c0f3648/83a80902-4894-42cb-a54b-7c31e468c43d) for user root (agent=Python service) 2015-08-07 13:23:47,784 INFO [ omero.cmd.SessionI] (l.Server-6) Added servant to adapter: 85f6e8ea-e5df-45cd-85bf-75ce199892f8/1e252e16-b755-4c5c-bc88-d7f8c16a0c78omero.api.IConfig(omero.api._IConfigTie@3114f1e8) 2015-08-07 13:23:47,786 INFO [ ome.services.util.ServiceHandler] (l.Server-8) Meth: interface ome.api.IConfig.getConfigValue 2015-08-07 13:23:47,786 INFO [ ome.services.util.ServiceHandler] (l.Server-8) Args: [omero.data.dir] 2015-08-07 13:23:47,789 INFO [ ome.services.blitz.util.CheckAllJobs] (l.Server-7) Received 0 job(s) 2015-08-07 13:23:47,813 INFO [ ome.security.basic.EventHandler] (l.Server-8) Auth: user=0,group=0,event=22413(User),sess=85f6e8ea-e5df-45cd-85bf-75ce199892f8 2015-08-07 13:23:47,814 INFO [ omero.cmd.SessionI] (l.Server-4) Added servant to adapter: 83a80902-4894-42cb-a54b-7c31e468c43d/4a25b3d3-a5a4-4e5a-aeb4-c4b63c0f3648omero.grid.SharedResources(omero.grid._SharedResourcesTie@7ce4991d) 2015-08-07 13:23:47,830 INFO [ org.perf4j.TimingLogger] (l.Server-8) start[1438968227786] time[43] tag[omero.call.success.ome.logic.ConfigImpl.getConfigValue] 2015-08-07 13:23:47,830 INFO [ ome.services.util.ServiceHandler] (l.Server-8) Rslt: /home/OMS/OMERO.data 2015-08-07 13:23:47,834 INFO [ ome.services.util.ServiceHandler] (l.Server-5) Meth: interface ome.api.IConfig.getDatabaseUuid 2015-08-07 13:23:47,834 INFO [ ome.services.util.ServiceHandler] (l.Server-5) Args: () 2015-08-07 13:23:47,857 INFO [ ome.security.basic.EventHandler] (l.Server-5) Auth: user=0,group=0,event=22414(User),sess=85f6e8ea-e5df-45cd-85bf-75ce199892f8 2015-08-07 13:23:47,873 INFO [ org.perf4j.TimingLogger] (l.Server-5) start[1438968227834] time[38] tag[omero.call.success.ome.logic.ConfigImpl.getDatabaseUuid] 2015-08-07 13:23:47,873 INFO [ ome.services.util.ServiceHandler] (l.Server-5) Rslt: bd756a09-5b59-4060-abd4-4cec15f73977 2015-08-07 13:23:47,904 INFO [ omero.cmd.SessionI] (l.Server-6) Added servant to adapter: 85f6e8ea-e5df-45cd-85bf-75ce199892f8/1e252e16-b755-4c5c-bc88-d7f8c16a0c78omero.api.IQuery(omero.api._IQueryTie@3807360a) 2015-08-07 13:23:47,928 INFO [ ome.services.util.ServiceHandler] (l.Server-0) Meth: interface ome.api.IQuery.findByQuery 2015-08-07 13:23:47,929 INFO [ ome.services.util.ServiceHandler] (l.Server-0) Args: [select f from OriginalFile f where hash = :uuid, PARAMS:uuid=57ebc370-b507-491d-9bc7-bf66fd19201b ] 2015-08-07 13:23:47,933 INFO [ ome.security.basic.EventHandler] (l.Server-0) Auth: user=0,group=0,event=null(User),sess=85f6e8ea-e5df-45cd-85bf-75ce199892f8 2015-08-07 13:23:47,949 INFO [ org.perf4j.TimingLogger] (l.Server-0) start[1438968227929] time[20] tag[omero.call.success.ome.logic.QueryImpl.findByQuery] 2015-08-07 13:23:47,949 INFO [ ome.services.util.ServiceHandler] (l.Server-0) Rslt: ome.model.core.OriginalFile:Id_3 2015-08-07 13:24:00,017 INFO [ ome.services.blitz.fire.SessionManagerI] (2-thread-5) Performing requestHeartbeats ___________________________________________________________________________________________________________________________________________________________ omero-web.log 2015-08-07 09:53:51,516 DEBUG [ omeroweb.settings] (MainThread) TEMPLATE_DIRS = [] (source:default) 2015-08-07 09:53:51,516 DEBUG [ omeroweb.settings] (MainThread) CENTER_PLUGINS = [] (source:default) 2015-08-07 09:53:51,516 DEBUG [ omeroweb.settings] (MainThread) RIGHT_PLUGINS = [[u'Acquisition', u'webclient/data/includes/right_plugin.acquisition.js.html', u'metadata_tab'], [u'Preview', u'webclient/data/includes/right_plugin.preview.js.html', u'preview_tab']] (source:default) 2015-08-07 09:53:51,516 DEBUG [ omeroweb.settings] (MainThread) TOP_LINKS = [[u'Data', u'webindex', {u'title': u'Browse Data via Projects, Tags etc'}], [u'History', u'history', {u'title': u'History'}], [u'Help', u'http://help.openmicroscopy.org/', {u'target': u'new', u'title': u'Open OMERO user guide in a new tab'}]] (source:default) 2015-08-07 09:53:51,516 DEBUG [ omeroweb.settings] (MainThread) WEBGATEWAY_CACHE = None (source:default) 2015-08-07 09:53:51,517 DEBUG [ omeroweb.settings] (MainThread) INSTALLED_APPS=[('django.contrib.staticfiles', 'django.contrib.auth', 'django.contrib.contenttypes', 'django.contrib.sessions', 'django.contrib.sites', 'omeroweb.feedback', 'omeroweb.webadmin', 'omeroweb.webclient', 'omeroweb.webgateway', 'omeroweb.webredirect', 'omeroweb.webstart', 'pipeline')] 2015-08-07 09:53:52,621 INFO [ __main__] (MainThread) Application Starting... 2015-08-07 09:53:52,630 INFO [ root] (MainThread) Processing custom settings for module omeroweb.settings 2015-08-07 09:53:52,631 INFO [ root] (MainThread) Processing custom settings for module omeroweb.settings 2015-08-07 09:53:52,631 INFO [ root] (MainThread) Processing custom settings for module omeroweb.settings 2015-08-07 09:53:52,632 DEBUG [ omeroweb.settings] (MainThread) ADMINS = [] (source:default) 2015-08-07 09:53:52,632 DEBUG [ omeroweb.settings] (MainThread) APPLICATION_SERVER = 'development' (source:omero.web.application_server) 2015-08-07 09:53:52,632 DEBUG [ omeroweb.settings] (MainThread) APPLICATION_SERVER_HOST = '127.0.0.1' (source:default) 2015-08-07 09:53:52,632 DEBUG [ omeroweb.settings] (MainThread) APPLICATION_SERVER_MAX_REQUESTS = 400 (source:default) 2015-08-07 09:53:52,632 DEBUG [ omeroweb.settings] (MainThread) APPLICATION_SERVER_PORT = '4080' (source:default) 2015-08-07 09:53:52,632 DEBUG [ omeroweb.settings] (MainThread) ADDITIONAL_APPS = [] (source:default) 2015-08-07 09:53:52,633 DEBUG [ omeroweb.settings] (MainThread) CACHES = {u'default': {u'BACKEND': u'django.core.cache.backends.dummy.DummyCache'}} (source:default) 2015-08-07 09:53:52,633 DEBUG [ omeroweb.settings] (MainThread) DATABASES = {} (source:default) 2015-08-07 09:53:52,633 DEBUG [ omeroweb.settings] (MainThread) DEBUG = True (source:omero.web.debug) 2015-08-07 09:53:52,633 DEBUG [ omeroweb.settings] (MainThread) INDEX_TEMPLATE = None (source:default) 2015-08-07 09:53:52,633 DEBUG [ omeroweb.settings] (MainThread) LOGDIR = '/home/OMS/apps/OMERO/OMERO.server/var/log' (source:default) 2015-08-07 09:53:52,633 DEBUG [ omeroweb.settings] (MainThread) LOGIN_LOGO = None (source:default) 2015-08-07 09:53:52,634 DEBUG [ omeroweb.settings] (MainThread) LOGIN_REDIRECT = {} (source:default) 2015-08-07 09:53:52,634 DEBUG [ omeroweb.settings] (MainThread) LOGIN_VIEW = 'weblogin' (source:default) 2015-08-07 09:53:52,634 DEBUG [ omeroweb.settings] (MainThread) OPEN_ASTEX_MAX_SIDE = 400 (source:default) 2015-08-07 09:53:52,634 DEBUG [ omeroweb.settings] (MainThread) OPEN_ASTEX_MAX_VOXELS = 27000000 (source:default) 2015-08-07 09:53:52,634 DEBUG [ omeroweb.settings] (MainThread) OPEN_ASTEX_MIN_SIDE = 20 (source:default) 2015-08-07 09:53:52,634 DEBUG [ omeroweb.settings] (MainThread) PAGE = 200 (source:default) 2015-08-07 09:53:52,634 DEBUG [ omeroweb.settings] (MainThread) PING_INTERVAL = 60000 (source:default) 2015-08-07 09:53:52,635 DEBUG [ omeroweb.settings] (MainThread) PIPELINE_CSS_COMPRESSOR = None (source:default) 2015-08-07 09:53:52,635 DEBUG [ omeroweb.settings] (MainThread) PIPELINE_JS_COMPRESSOR = None (source:default) 2015-08-07 09:53:52,635 DEBUG [ omeroweb.settings] (MainThread) STATICFILES_STORAGE = 'pipeline.storage.PipelineStorage' (source:default) 2015-08-07 09:53:52,635 DEBUG [ omeroweb.settings] (MainThread) FORCE_SCRIPT_NAME = '/omero' (source:omero.web.prefix) 2015-08-07 09:53:52,635 DEBUG [ omeroweb.settings] (MainThread) PUBLIC_CACHE_ENABLED = False (source:default) 2015-08-07 09:53:52,635 DEBUG [ omeroweb.settings] (MainThread) PUBLIC_CACHE_KEY = u'********************' (source:default) 2015-08-07 09:53:52,636 DEBUG [ omeroweb.settings] (MainThread) PUBLIC_CACHE_TIMEOUT = 86400 (source:default) 2015-08-07 09:53:52,636 DEBUG [ omeroweb.settings] (MainThread) PUBLIC_ENABLED = False (source:default) 2015-08-07 09:53:52,636 DEBUG [ omeroweb.settings] (MainThread) PUBLIC_PASSWORD = u'********************' (source:default) 2015-08-07 09:53:52,636 DEBUG [ omeroweb.settings] (MainThread) PUBLIC_SERVER_ID = 1 (source:default) 2015-08-07 09:53:52,636 DEBUG [ omeroweb.settings] (MainThread) PUBLIC_URL_FILTER = <_sre.SRE_Pattern object at 0x497dc60> (source:default) 2015-08-07 09:53:52,636 DEBUG [ omeroweb.settings] (MainThread) PUBLIC_USER = None (source:default) 2015-08-07 09:53:52,637 DEBUG [ omeroweb.settings] (MainThread) SERVER_LIST = [[u'localhost', 4064, u'omero']] (source:default) 2015-08-07 09:53:52,637 DEBUG [ omeroweb.settings] (MainThread) SESSION_COOKIE_AGE = 86400 (source:default) 2015-08-07 09:53:52,637 DEBUG [ omeroweb.settings] (MainThread) SESSION_COOKIE_DOMAIN = None (source:default) 2015-08-07 09:53:52,637 DEBUG [ omeroweb.settings] (MainThread) SESSION_COOKIE_NAME = None (source:default) 2015-08-07 09:53:52,637 DEBUG [ omeroweb.settings] (MainThread) SESSION_ENGINE = 'omeroweb.filesessionstore' (source:default) 2015-08-07 09:53:52,637 DEBUG [ omeroweb.settings] (MainThread) SESSION_EXPIRE_AT_BROWSER_CLOSE = True (source:default) 2015-08-07 09:53:52,637 DEBUG [ omeroweb.settings] (MainThread) STATIC_URL = '/omero-web.inflammgen.local/' (source:omero.web.static_url) 2015-08-07 09:53:52,638 DEBUG [ omeroweb.settings] (MainThread) STATICFILES_DIRS = [] (source:default) 2015-08-07 09:53:52,638 DEBUG [ omeroweb.settings] (MainThread) TEMPLATE_DIRS = [] (source:default) 2015-08-07 09:53:52,638 DEBUG [ omeroweb.settings] (MainThread) CENTER_PLUGINS = [] (source:default) 2015-08-07 09:53:52,638 DEBUG [ omeroweb.settings] (MainThread) RIGHT_PLUGINS = [[u'Acquisition', u'webclient/data/includes/right_plugin.acquisition.js.html', u'metadata_tab'], [u'Preview', u'webclient/data/includes/right_plugin.preview.js.html', u'preview_tab']] (source:default) 2015-08-07 09:53:52,638 DEBUG [ omeroweb.settings] (MainThread) TOP_LINKS = [[u'Data', u'webindex', {u'title': u'Browse Data via Projects, Tags etc'}], [u'History', u'history', {u'title': u'History'}], [u'Help', u'http://help.openmicroscopy.org/', {u'target': u'new', u'title': u'Open OMERO user guide in a new tab'}]] (source:default) 2015-08-07 09:53:52,638 DEBUG [ omeroweb.settings] (MainThread) WEBGATEWAY_CACHE = None (source:default) 2015-08-07 09:53:52,639 DEBUG [ omeroweb.settings] (MainThread) INSTALLED_APPS=[('django.contrib.staticfiles', 'django.contrib.auth', 'django.contrib.contenttypes', 'django.contrib.sessions', 'django.contrib.sites', 'omeroweb.feedback', 'omeroweb.webadmin', 'omeroweb.webclient', 'omeroweb.webgateway', 'omeroweb.webredirect', 'omeroweb.webstart', 'pipeline')] ~ _______________________________________________________________________________________________________________________________________________________________ Tables-0.log 2015-08-07 10:27:24,615 INFO [ omero.util.Server] (MainThread) ******************************************************************************** 2015-08-07 10:27:24,615 INFO [ omero.util.Server] (MainThread) Waiting 10000 ms on startup 2015-08-07 10:27:34,616 INFO [ omero.util.Server] (MainThread) Starting 2015-08-07 10:27:34,616 INFO [ omero.util.Server] (MainThread) Loaded dependency numpy (1.6.2) 2015-08-07 10:27:34,616 INFO [ omero.util.Server] (MainThread) Loaded dependency tables (2.3.1, hdf=1.8.8) 2015-08-07 10:27:34,619 INFO [ omero.util.Resources] (Thread-2 ) Starting 2015-08-07 10:27:46,390 INFO [ omero.utils] (MainThread) Failed to get session on attempt 1 2015-08-07 10:27:56,719 INFO [ omero.util.Server] (MainThread) Entering main loop 2015-08-07 11:11:29,423 INFO [ omero.util.Server] (MainThread) Cleanup 2015-08-07 11:11:29,423 INFO [ omero.tables.TablesI] (MainThread) Cleaning up 2015-08-07 11:11:29,423 INFO [ omero.tables.TablesI] (MainThread) Done 2015-08-07 11:11:29,453 INFO [ omero.util.Resources] (Thread-2 ) Halted 2015-08-07 11:11:29,454 INFO [ omero.util.Server] (MainThread) Stopped 2015-08-07 11:11:29,454 INFO [ omero.util.Server] (MainThread) ******************************************************************************** 2015-08-07 11:11:49,708 INFO [ omero.util.Server] (MainThread) ******************************************************************************** 2015-08-07 11:11:49,708 INFO [ omero.util.Server] (MainThread) Waiting 10000 ms on startup 2015-08-07 11:11:59,709 INFO [ omero.util.Server] (MainThread) Starting 2015-08-07 11:11:59,709 INFO [ omero.util.Server] (MainThread) Loaded dependency numpy (1.6.2) 2015-08-07 11:11:59,709 INFO [ omero.util.Server] (MainThread) Loaded dependency tables (2.3.1, hdf=1.8.8) 2015-08-07 11:11:59,711 INFO [ omero.util.Resources] (Thread-2 ) Starting 2015-08-07 11:12:05,742 INFO [ omero.utils] (MainThread) Failed to get session on attempt 1 2015-08-07 11:12:16,047 INFO [ omero.util.Server] (MainThread) Entering main loop 2015-08-07 13:21:28,092 INFO [ omero.util.Server] (MainThread) Cleanup 2015-08-07 13:21:28,092 INFO [ omero.tables.TablesI] (MainThread) Cleaning up 2015-08-07 13:21:28,092 INFO [ omero.tables.TablesI] (MainThread) Done 2015-08-07 13:21:28,094 WARNI [ omero.util.ServerContext] (MainThread) Connection failure: exception ::Ice::NoEndpointException { proxy = session-ae43dbc1-4a78-418a-87b3-5e9dc69bceb9/5e3c98c4-e968-460b-a1dd-50009baa1ca2 -t @ BlitzAdapters } 2015-08-07 13:21:28,094 INFO [ omero.util.Server] (MainThread) Stopped 2015-08-07 13:21:28,094 INFO [ omero.util.Server] (MainThread) ******************************************************************************** 2015-08-07 13:21:28,104 INFO [ omero.util.Resources] (Thread-2 ) Halted 2015-08-07 13:21:47,743 INFO [ omero.util.Server] (MainThread) ******************************************************************************** 2015-08-07 13:21:47,743 INFO [ omero.util.Server] (MainThread) Waiting 10000 ms on startup 2015-08-07 13:21:57,743 INFO [ omero.util.Server] (MainThread) Starting 2015-08-07 13:21:57,744 INFO [ omero.util.Server] (MainThread) Loaded dependency numpy (1.6.2) 2015-08-07 13:21:57,744 INFO [ omero.util.Server] (MainThread) Loaded dependency tables (2.3.1, hdf=1.8.8) 2015-08-07 13:21:57,746 INFO [ omero.util.Resources] (Thread-2 ) Starting 2015-08-07 13:22:03,533 INFO [ omero.utils] (MainThread) Failed to get session on attempt 1 2015-08-07 13:22:13,549 INFO [ omero.utils] (MainThread) Failed to get session on attempt 2 2015-08-07 13:22:23,552 INFO [ omero.utils] (MainThread) Failed to get session on attempt 3 2015-08-07 13:22:33,555 INFO [ omero.utils] (MainThread) Failed to get session on attempt 4 2015-08-07 13:22:43,559 INFO [ omero.utils] (MainThread) Failed to get session on attempt 5 2015-08-07 13:22:53,562 INFO [ omero.utils] (MainThread) Failed to get session on attempt 6 2015-08-07 13:23:03,562 WARNI [ omero.utils] (MainThread) Reason: exception ::Ice::NoEndpointException { proxy = BlitzManager -t @ BlitzAdapters } 2015-08-07 13:23:03,562 ERROR [ omero.util.Server] (MainThread) Failed initialization Traceback (most recent call last): File "/home/OMS/apps/OMERO/OMERO.server-5.1.2-ice34-b45/lib/python/omero/util/__init__.py", line 494, in run self.impl = self.impl_class(ctx) File "/home/OMS/apps/OMERO/OMERO.server-5.1.2-ice34-b45/lib/python/omero/tables.py", line 928, in __init__ omero.util.Servant.__init__(self, ctx, needs_session=True) File "/home/OMS/apps/OMERO/OMERO.server-5.1.2-ice34-b45/lib/python/omero/util/__init__.py", line 580, in __init__ self.ctx.newSession() File "/home/OMS/apps/OMERO/OMERO.server-5.1.2-ice34-b45/lib/python/omero/util/__init__.py", line 341, in newSession self.communicator, stop_event=self.stop_event) File "/home/OMS/apps/OMERO/OMERO.server-5.1.2-ice34-b45/lib/python/omero/util/__init__.py", line 218, in internal_service_factory raise excpt NoEndpointException: exception ::Ice::NoEndpointException { proxy = BlitzManager -t @ BlitzAdapters } 2015-08-07 13:23:03,599 INFO [ omero.util.Server] (MainThread) Cleanup 2015-08-07 13:23:03,600 INFO [ omero.util.Server] (MainThread) Stopped 2015-08-07 13:23:03,600 INFO [ omero.util.Server] (MainThread) ******************************************************************************** 2015-08-07 13:23:03,600 INFO [ omero.tables.TablesI] (MainThread) Cleaning up 2015-08-07 13:23:03,600 INFO [ omero.tables.TablesI] (MainThread) Done 2015-08-07 13:23:03,606 WARNI [ stderr] (MainThread) 2015-08-07 13:23:03.606630 Tables-0: error: Traceback (most recent call last): File "/usr/lib/pymodules/python2.7/Ice.py", line 984, in main status = self.doMain(args, initData) File "/usr/lib/pymodules/python2.7/Ice.py", line 1031, in doMain return self.run(args) File "/home/OMS/apps/OMERO/OMERO.server-5.1.2-ice34-b45/lib/python/omero/util/__init__.py", line 498, in run sys.exit(100) SystemExit: 100 2015-08-07 13:23:03,637 INFO [ omero.util.Resources] (Thread-2 ) Halted 2015-08-07 13:23:22,473 INFO [ omero.util.Server] (MainThread) ******************************************************************************** 2015-08-07 13:23:22,473 INFO [ omero.util.Server] (MainThread) Waiting 10000 ms on startup 2015-08-07 13:23:32,474 INFO [ omero.util.Server] (MainThread) Starting 2015-08-07 13:23:32,474 INFO [ omero.util.Server] (MainThread) Loaded dependency numpy (1.6.2) 2015-08-07 13:23:32,474 INFO [ omero.util.Server] (MainThread) Loaded dependency tables (2.3.1, hdf=1.8.8) 2015-08-07 13:23:32,476 INFO [ omero.util.Resources] (Thread-2 ) Starting 2015-08-07 13:23:37,676 INFO [ omero.utils] (MainThread) Failed to get session on attempt 1 2015-08-07 13:23:47,976 INFO [ omero.util.Server] (MainThread) Entering main loop ________________________________________________________________________________________________________________________________________________________________