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Hi Jean-Marc,
<div class=""><br class="">
</div>
<div class="">assuming you haven’t upgraded your database to 5.1 yet, you’ll need to</div>
<div class="">run the PSQL command you pasted in your email before starting the </div>
<div class="">server (likely as the postgres user given your setup).</div>
<div class=""><br class="">
</div>
<div class="">Best,</div>
<div class="">Sebastien</div>
<div class=""><br class="">
<div>
<blockquote type="cite" class="">
<div class="">On 4 Aug 2015, at 21:13, Jean-Marc Champagne <<a href="mailto:jean-marc.champagne@mhi-rc.org" class="">jean-marc.champagne@mhi-rc.org</a>> wrote:</div>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">I have copied the files to omero.server/etc/grid from the zip file and ran bin/omero admin diagnostics results below, Do I need to run
</span><span style="font-size: 8pt;" class="">psql -h localhost -U <strong class="">
db_user</strong> <strong class="">omero_database</strong> < sql/psql/OMERO5.1__1/OMERO5.0__0.sql<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""> </span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">I tried to run omero@sripl-ig-oms01:/home/OMS/apps/OMERO/OMERO.server$ psql -l<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">psql: FATAL: role "omero" does not exist from my omero user<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""> </span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">result from postgres user Is this normal ?<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""> </span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">postgres@sripl-ig-oms01:/home/OMS/apps/OMERO/OMERO.server$ psql -l<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""> List of databases<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""> Name | Owner | Encoding | Collate | Ctype | Access privileges<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">----------------+----------+----------+-------------+-------------+-----------------------<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">omero_database | db_user | UTF8 | en_CA.UTF-8 | en_CA.UTF-8 |<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""></span><span lang="FR-CA" style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">postgres | postgres | UTF8 |
en_CA.UTF-8 | en_CA.UTF-8 |<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span lang="FR-CA" style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">template0 | postgres | UTF8 | en_CA.UTF-8 | en_CA.UTF-8 | =c/postgres +<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span lang="FR-CA" style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""> | | | | | postgres=CTc/postgres<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span lang="FR-CA" style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">template1 | postgres | UTF8 | en_CA.UTF-8 | en_CA.UTF-8 | postgres=CTc/postgres+<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span lang="FR-CA" style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">
</span><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">| | | | | =c/postgres<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">(4 rows)<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""> </span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">================================================================================<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">OMERO Diagnostics 5.1.2-ice34-b45<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">================================================================================<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""> </span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">WARNING:omero.util.UpgradeCheck:UPGRADE AVAILABLE:Please upgrade to 5.1.3 See
<a href="http://trac.openmicroscopy.org.uk/omero" class="">http://trac.openmicroscopy.org.uk/omero</a> for the latest version<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""> </span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">Commands: java -version 1.7.0 (/usr/bin/java -- 2 others)<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">Commands: python -V 2.7.3 (/usr/bin/python)<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">Commands: icegridnode --version 3.4.2 (/usr/bin/icegridnode)<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">Commands: icegridadmin --version 3.4.2 (/usr/bin/icegridadmin)<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">Commands: psql --version 9.4.4 (/usr/bin/psql -- 2 others)<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""> </span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">Server: icegridnode running<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">Server: Blitz-0 active (pid = 4008, enabled)<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">Server: DropBox active (pid = 4009, enabled)<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">Server: FileServer active (pid = 4012, enabled)<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">Server: Indexer-0 active (pid = 4014, enabled)<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">Server: MonitorServer active (pid = 4016, enabled)<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">Server: OMERO.Glacier2 active (pid = 4017, enabled)<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">Server: OMERO.IceStorm active (pid = 4019, enabled)<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">Server: PixelData-0 active (pid = 4020, enabled)<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">Server: Processor-0 active (pid = 4101, enabled)<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">Server: Tables-0 active (pid = 4105, enabled)<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">Server: TestDropBox inactive (enabled)<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""> </span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">Log dir: /home/OMS/apps/OMERO/OMERO.server-5.1.2-ice34-b45/var/log exists<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""> </span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">Log files: Blitz-0.log 419.0 KB errors=108 warnings=10<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">Log files: DropBox.log 20.0 KB errors=8 warnings=9<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">Log files: FileServer.log 3.0 KB<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">Log files: Indexer-0.log 159.0 KB errors=92 warnings=0<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">Log files: MonitorServer.log 9.0 KB<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">Log files: OMEROweb.log 72.0 KB<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">Log files: OMEROweb_request.log 0.0 KB<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">Log files: PixelData-0.log 152.0 KB errors=79 warnings=0<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">Log files: Processor-0.log 127.0 KB errors=64 warnings=35<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">Log files: Tables-0.log 135.0 KB errors=64 warnings=36<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">Log files: TestDropBox.log n/a<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">Log files: master.err 5.0 KB errors=3 warnings=16<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">Log files: master.out 0.0 KB<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">Log files: Total size 1.11 MB<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""> </span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""> </span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">Environment:OMERO_HOME=(unset)<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">Environment:OMERO_NODE=(unset)<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">Environment:OMERO_MASTER=(unset)<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">Environment:OMERO_USERDIR=(unset)<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">Environment:OMERO_TMPDIR=(unset)<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">Environment:PATH=/usr/local/bin:/usr/bin:/bin:/usr/local/games:/usr/games:/usr/lib/jvm/java-6-sun/bin:/usr/share/Ice-3.4.2:/usr/lib/postgresql/9.1/bin:/home/OMS/apps/OMERO/OMERO.server/bin<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">Environment:PYTHONPATH=/usr/lib/pymodules/python2.7:<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">Environment:ICE_HOME=/usr/share/Ice-3.4.2<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">Environment:LD_LIBRARY_PATH=/usr/share/java:/usr/lib:<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">Environment:DYLD_LIBRARY_PATH=(unset)<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""> </span></p>
<p class="MsoNormal"><span lang="FR-CA" style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">OMERO SSL port:4064<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span lang="FR-CA" style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">OMERO TCP port:4063<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">OMERO data dir:'/home/OMS/OMERO.data' Exists? True Is writable? True<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""> </span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">JVM settings: Blitz -Xmx3799m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">JVM settings: Indexer -Xmx2532m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">JVM settings: Pixeldata -Xmx3799m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">JVM settings: Repository -Xmx2532m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""> </span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">OMERO.web status... [RUNNING] (PID 3544)<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""> </span></p>
<div class="">
<p class="MsoNormal"><b class=""><span lang="FR-CA" style="font-size:10.0pt;font-family:"Arial","sans-serif";color:blue" class="">Jean-Marc Champagne</span></b><b class=""><span lang="FR-CA" style="font-size:11.0pt;font-family:"Arial","sans-serif";color:blue" class=""><o:p class=""></o:p></span></b></p>
<p class="MsoNormal"><span lang="FR-CA" style="font-size:10.0pt;font-family:"Arial","sans-serif";color:#1F497D" class="">Analyste informatique et infrastructure</span><span lang="FR-CA" style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""><o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Arial","sans-serif";color:#1F497D" class="">Tel:</span><span style="font-size:10.0pt;font-family:"Arial","sans-serif";color:gray" class=""> </span><span style="font-size:10.0pt;font-family:"Arial","sans-serif";color:#1F497D" class="">+1-514-461-1300
x 3311<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Arial","sans-serif";color:#1F497D" class="">Fax: +1-514-461-1301<o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Arial","sans-serif";color:#1F497D" class="">Site web/Website:
</span><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""><a href="http://www.mhicc.org/" class=""><span style="font-size:10.0pt;font-family:"Arial","sans-serif";color:blue" class="">www.mhicc.org</span></a></span><span style="font-size:10.0pt;font-family:"Arial","sans-serif";color:#1F497D" class=""><o:p class=""></o:p></span></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Arial","sans-serif";color:#1F497D" class=""> </span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Arial","sans-serif";color:#1F497D" class=""><image001.jpg></span><b class=""><span lang="FR-CA" style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""><o:p class=""></o:p></span></b></p>
<p class="MsoNormal"><b class=""><span lang="FR" style="font-size:8.0pt;font-family:"Arial","sans-serif";color:#1F497D" class="">4100 Molson St., Suite 300, Montreal, Quebec H1Y 3N1 CANADA</span></b><span lang="FR-CA" style="color:#1F497D" class=""><o:p class=""></o:p></span></p>
<p class="MsoNormal"><span lang="FR-CA" style="font-size:11.0pt;font-family:"Arial","sans-serif";color:#1F497D" class=""> </span></p>
<p class="MsoNormal"><i class=""><span lang="FR-CA" style="font-size:10.0pt;font-family:"Arial","sans-serif";color:#1F497D" class="">Ce courriel peut contenir de l’information privilégiée, confidentielle ou protégée contre la divulgation. Si ce courriel a été
reçu par erreur, veuillez en aviser l’expéditeur et détruire toute copie en votre possession. Toute utilisation, divulgation, distribution ou impression du contenu de ce courriel est strictement interdite.
<o:p class=""></o:p></span></i></p>
<p class="MsoNormal"><i class=""><span lang="FR-CA" style="font-size:10.0pt;font-family:"Arial","sans-serif";color:#1F497D" class=""> </span></i></p>
<p class="MsoNormal"><i class=""><span lang="EN-CA" style="font-size:10.0pt;font-family:"Arial","sans-serif";color:#1F497D" class="">This e-mail may contain information that is privileged, confidential and/or exempt from disclosure. If this e-mail has been
received in error, please notify the sender and destroy all copies of this e-mail. Any use, disclosure, distribution, or printing of the contents of this e-mail is strictly prohibited.
</span></i><i class=""><span lang="EN-CA" style="font-size:10.0pt;font-family:"Arial","sans-serif";color:#1F497D" class=""><o:p class=""></o:p></span></i></p>
</div>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""> </span></p>
<div class="">
<div style="border:none;border-top:solid #B5C4DF 1.0pt;padding:3.0pt 0in 0in 0in" class="">
<p class="MsoNormal"><b class=""><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"" class="">From:</span></b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"" class=""> ome-users [<a href="mailto:ome-users-bounces@lists.openmicroscopy.org.uk" class="">mailto:ome-users-bounces@lists.openmicroscopy.org.uk</a>]
<b class="">On Behalf Of </b>Sebastien Besson (Staff)<br class="">
<b class="">Sent:</b> 4 août 2015 15:46<br class="">
<b class="">To:</b> users OME<br class="">
<b class="">Subject:</b> Re: [ome-users] upgrade from 5.0.0-ice34-b19 to 5.1.2-ice35-b5<o:p class=""></o:p></span></p>
</div>
</div>
<p class="MsoNormal"><o:p class=""> </o:p></p>
<p class="MsoNormal">Hi Jean-Marie, <o:p class=""></o:p></p>
<div class="">
<p class="MsoNormal"><o:p class=""> </o:p></p>
</div>
<div class="">
<p class="MsoNormal">No worries. Indeed, what I meant is that the default.xml, windefault.xml and<o:p class=""></o:p></p>
</div>
<div class="">
<p class="MsoNormal">templates.xml files located under your OMERO.server/etc/grid should be the<o:p class=""></o:p></p>
</div>
<div class="">
<p class="MsoNormal">same as the ones extracted from the OMERO.server zip bundle.<br class="">
<br class="">
Either you can replace these files under OMERO.server/etc/grid/ or you can <o:p class="">
</o:p></p>
<div class="">
<p class="MsoNormal">start from scratch by removing the 5.1.3 OMERO.server and running something<o:p class=""></o:p></p>
</div>
<div class="">
<p class="MsoNormal">like<o:p class=""></o:p></p>
<div class="">
<p class="MsoNormal"><o:p class=""> </o:p></p>
</div>
<div class="">
<p class="MsoNormal">$ unzip OMERO.server-5.1.2-ice34-b45.zip<br class="">
$ ln -s OMERO.server-5.1.2-ice34-b45 OMERO.server<o:p class=""></o:p></p>
</div>
<div class="">
<p class="MsoNormal">$ cp OMERO.server-old/etc/grid/config.xml OMERO.server/etc/grid<o:p class=""></o:p></p>
</div>
<div class="">
<p class="MsoNormal"><o:p class=""> </o:p></p>
</div>
<div class="">
<div class="">
<p class="MsoNormal">and then start the new server.<o:p class=""></o:p></p>
</div>
</div>
<div class="">
<p class="MsoNormal"><o:p class=""> </o:p></p>
</div>
<div class="">
<p class="MsoNormal">Let us know if this works<o:p class=""></o:p></p>
</div>
<div class="">
<p class="MsoNormal">Sebastien<o:p class=""></o:p></p>
</div>
<div class="">
<p class="MsoNormal"><o:p class=""> </o:p></p>
</div>
<div class="">
<p class="MsoNormal">[1] <a href="https://www.openmicroscopy.org/site/support/omero5.1/sysadmins/server-upgrade.html#copy-new-binaries" class="">https://www.openmicroscopy.org/site/support/omero5.1/sysadmins/server-upgrade.html#copy-new-binaries</a><o:p class=""></o:p></p>
</div>
<div class="">
<p class="MsoNormal"><o:p class=""> </o:p></p>
</div>
<div class="">
<p class="MsoNormal"><o:p class=""> </o:p></p>
<div class="">
<blockquote style="margin-top:5.0pt;margin-bottom:5.0pt" class="">
<div class="">
<p class="MsoNormal">On 4 Aug 2015, at 20:34, Jean-Marc Champagne <<a href="mailto:jean-marc.champagne@mhi-rc.org" class="">jean-marc.champagne@mhi-rc.org</a>> wrote:<o:p class=""></o:p></p>
</div>
<p class="MsoNormal"><o:p class=""> </o:p></p>
<div class="">
<div class="">
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">Sorry, I’m not sure I understand what you are telling me (confused)</span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">You want me to unzip the file again into OMERO.server/etc/grid/*.xml and only copy the OMERO.server/etc/grid/config.xml from Omero.server-old ?</span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""> </span><o:p class=""></o:p></p>
<div class="">
<p class="MsoNormal"><b class=""><span lang="FR-CA" style="font-size:10.0pt;font-family:"Arial","sans-serif";color:blue" class="">Jean-Marc Champagne</span></b><o:p class=""></o:p></p>
<p class="MsoNormal"><span lang="FR-CA" style="font-size:10.0pt;font-family:"Arial","sans-serif";color:#1F497D" class="">Analyste informatique et infrastructure</span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Arial","sans-serif";color:#1F497D" class="">Tel:</span><span style="font-size:10.0pt;font-family:"Arial","sans-serif";color:gray" class=""> </span><span style="font-size:10.0pt;font-family:"Arial","sans-serif";color:#1F497D" class="">+1-514-461-1300
x 3311</span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Arial","sans-serif";color:#1F497D" class="">Fax: +1-514-461-1301</span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Arial","sans-serif";color:#1F497D" class="">Site web/Website:
</span><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""><a href="http://www.mhicc.org/" class=""><span style="font-size:10.0pt;font-family:"Arial","sans-serif"" class="">www.mhicc.org</span></a></span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Arial","sans-serif";color:#1F497D" class=""> </span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Arial","sans-serif";color:#1F497D" class=""><image001.jpg></span><o:p class=""></o:p></p>
<p class="MsoNormal"><b class=""><span lang="FR" style="font-size:8.0pt;font-family:"Arial","sans-serif";color:#1F497D" class="">4100 Molson St., Suite 300, Montreal, Quebec H1Y 3N1 CANADA</span></b><o:p class=""></o:p></p>
<p class="MsoNormal"><span lang="FR-CA" style="font-size:11.0pt;font-family:"Arial","sans-serif";color:#1F497D" class=""> </span><o:p class=""></o:p></p>
<p class="MsoNormal"><i class=""><span lang="FR-CA" style="font-size:10.0pt;font-family:"Arial","sans-serif";color:#1F497D" class="">Ce courriel peut contenir de l’information privilégiée, confidentielle ou protégée contre la divulgation. Si ce courriel a été
reçu par erreur, veuillez en aviser l’expéditeur et détruire toute copie en votre possession. Toute utilisation, divulgation, distribution ou impression du contenu de ce courriel est strictement interdite.
</span></i><o:p class=""></o:p></p>
<p class="MsoNormal"><i class=""><span lang="FR-CA" style="font-size:10.0pt;font-family:"Arial","sans-serif";color:#1F497D" class=""> </span></i><o:p class=""></o:p></p>
<p class="MsoNormal"><i class=""><span lang="EN-CA" style="font-size:10.0pt;font-family:"Arial","sans-serif";color:#1F497D" class="">This e-mail may contain information that is privileged, confidential and/or exempt from disclosure. If this e-mail has been
received in error, please notify the sender and destroy all copies of this e-mail. Any use, disclosure, distribution, or printing of the contents of this e-mail is strictly prohibited.
</span></i><o:p class=""></o:p></p>
</div>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""> </span><o:p class=""></o:p></p>
<div class="">
<div style="border:none;border-top:solid #B5C4DF 1.0pt;padding:3.0pt 0in 0in 0in" class="">
<p class="MsoNormal"><b class=""><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"" class="">From:</span></b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"" class=""> ome-users [<a href="mailto:ome-users-bounces@lists.openmicroscopy.org.uk" class="">mailto:ome-users-bounces@lists.openmicroscopy.org.uk</a>]
<b class="">On Behalf Of </b>Sebastien Besson (Staff)<br class="">
<b class="">Sent:</b> 4 août 2015 15:25<br class="">
<b class="">To:</b> users OME<br class="">
<b class="">Subject:</b> Re: [ome-users] upgrade from 5.0.0-ice34-b19 to 5.1.2-ice35-b5</span><o:p class=""></o:p></p>
</div>
</div>
<p class="MsoNormal"> <o:p class=""></o:p></p>
<p class="MsoNormal">Hi Jean-Marc, <o:p class=""></o:p></p>
<div class="">
<p class="MsoNormal"> <o:p class=""></o:p></p>
</div>
<div class="">
<p class="MsoNormal">The etc/grid/config.xml file contains the OMERO server configuration properties and should<o:p class=""></o:p></p>
</div>
<div class="">
<p class="MsoNormal">be the only file you need to copy in-between server upgrades.<o:p class=""></o:p></p>
</div>
<div class="">
<p class="MsoNormal">Several adjustments were also made to these templates for 5.1.0. Could you copy back all xml<o:p class=""></o:p></p>
</div>
<div class="">
<p class="MsoNormal">files from the downloaded server zip under etc/ and try starting the server again?<o:p class=""></o:p></p>
</div>
<div class="">
<p class="MsoNormal"> <o:p class=""></o:p></p>
</div>
<div class="">
<p class="MsoNormal">Looking at your config, you seem to have a mismatch between the database owner which is<o:p class=""></o:p></p>
</div>
<div class="">
<p class="MsoNormal">db_user and the configuration omero.db.user which is db_omero_user as well.<o:p class=""></o:p></p>
</div>
<div class="">
<p class="MsoNormal"> <o:p class=""></o:p></p>
</div>
<div class="">
<p class="MsoNormal">Best,<o:p class=""></o:p></p>
</div>
<div class="">
<p class="MsoNormal">Sebastien<o:p class=""></o:p></p>
</div>
<div class="">
<p class="MsoNormal"> <o:p class=""></o:p></p>
<div class="">
<blockquote style="margin-top:5.0pt;margin-bottom:5.0pt" class="">
<div class="">
<p class="MsoNormal">On 4 Aug 2015, at 20:12, Jean-Marc Champagne <<a href="mailto:jean-marc.champagne@mhi-rc.org" class="">jean-marc.champagne@mhi-rc.org</a>> wrote:<o:p class=""></o:p></p>
</div>
<p class="MsoNormal"> <o:p class=""></o:p></p>
<div class="">
<div class="">
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">I used the procedure I found on the site</span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:8.0pt;font-family:"Microsoft Sans Serif","sans-serif"" class=""><a href="http://www.openmicroscopy.org/site/support/omero4/sysadmins/unix/server-install-linux.html" class="">http://www.openmicroscopy.org/site/support/omero4/sysadmins/unix/server-install-linux.html</a></span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:8.0pt;font-family:"Microsoft Sans Serif","sans-serif"" class=""> </span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:8.0pt" class="">sudo apt-get install zeroc-ice33 but it’s not available anymore</span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:8.0pt" class=""> </span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:8.0pt" class="">After a restart of the server I tried again with apt-get install zeroc-ice34 and it installed it properly</span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:8.0pt" class=""> </span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">installed Ice
</span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">using</span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""> </span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">sudo apt-get install zeroc-ice34</span><o:p class=""></o:p></p>
<p class="MsoNormal"><span lang="FR-CA" style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">omero@sripl-ig-oms01:/home/OMS/apps/OMERO$ icegridnode --version 3.4.2</span><o:p class=""></o:p></p>
<p class="MsoNormal"><span lang="FR-CA" style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">python -c 'import Ice; print Ice.stringVersion()' 3.4.2</span><o:p class=""></o:p></p>
<p class="MsoNormal"><span lang="FR-CA" style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""> </span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">cp OMERO.server-old/etc/grid/config.xml OMERO.server/etc/grid/</span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""><a href="mailto:omero@sripl-ig-oms01:/home/OMS/apps/OMERO/OMERO.server$" class="">omero@sripl-ig-oms01:/home/OMS/apps/OMERO/OMERO.server$</a> bin/omero
admin stop</span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">Waiting on shutdown. Use CTRL-C to exit</span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""><a href="mailto:.....omero@sripl-ig-oms01:/home/OMS/apps/OMERO/OMERO.server$" class="">.....omero@sripl-ig-oms01:/home/OMS/apps/OMERO/OMERO.server$</a>
bin/omero admin start</span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">WARNING: lock files in /home/OMS/OMERO.data</span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">----------------------------------------</span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">/home/OMS/OMERO.data/.omero/repository/4dba782d-12bc-4a98-a950-0aa63c6b71ef/.lock</span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">/home/OMS/OMERO.data/.omero/repository/355ef21e-e9dd-4e2d-a696-3e019425da87/.lock</span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">/home/OMS/OMERO.data/.omero/repository/bd756a09-5b59-4060-abd4-4cec15f73977/.lock</span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">/home/OMS/OMERO.data/.omero/repository/0f86610b-2563-4aae-a964-070d1c539469/.lock</span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">----------------------------------------</span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">removed the files manually</span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""> </span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""> </span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""><a href="mailto:omero@sripl-ig-oms01:/home/OMS/apps/OMERO/OMERO.server$" class="">omero@sripl-ig-oms01:/home/OMS/apps/OMERO/OMERO.server$</a> bin/omero
admin restart</span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">Waiting on shutdown. Use CTRL-C to exit</span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">.No descriptor given. Using etc/grid/default.xml</span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">Waiting on startup. Use CTRL-C to exit</span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""> </span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""> </span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""><a href="mailto:postgres@sripl-ig-oms01:/home/OMS/apps/OMERO/OMERO.server$" class="">postgres@sripl-ig-oms01:/home/OMS/apps/OMERO/OMERO.server$</a>
psql -l </span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""> Name | Owner | Encoding | Collate | Ctype | Access privileges</span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">----------------+----------+----------+-------------+-------------+-----------------------</span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">omero_database | db_user | UTF8 | en_CA.UTF-8 | en_CA.UTF-8 |</span><o:p class=""></o:p></p>
<p class="MsoNormal"><span lang="FR-CA" style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">postgres | postgres | UTF8 | en_CA.UTF-8 | en_CA.UTF-8 |</span><o:p class=""></o:p></p>
<p class="MsoNormal"><span lang="FR-CA" style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">template0 | postgres | UTF8 | en_CA.UTF-8 | en_CA.UTF-8 | =c/postgres +</span><o:p class=""></o:p></p>
<p class="MsoNormal"><span lang="FR-CA" style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""> | | | | | postgres=CTc/postgres</span><o:p class=""></o:p></p>
<p class="MsoNormal"><span lang="FR-CA" style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">template1 | postgres | UTF8 | en_CA.UTF-8 | en_CA.UTF-8 | postgres=CTc/postgres+</span><o:p class=""></o:p></p>
<p class="MsoNormal"><span lang="FR-CA" style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">
</span><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">| | | | | =c/postgres ((does not work with OMERO user))</span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""> </span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""> List of databases</span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">(4 rows)</span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""> </span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">psql: FATAL: role "omero" does not exist</span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""> </span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">The database upgrade , reindex and vacuum) were done before, How can I verify that the data is good</span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""> </span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">cp OMERO.server-old/etc/grid/config.xml OMERO.server/etc/grid/config.xml</span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">Waiting on shutdown. Use CTRL-C to exit</span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">.No descriptor given. Using etc/grid/default.xml</span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">Waiting on startup. Use CTRL-C to exit</span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""> </span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">Verified config.xml</span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">vi OMERO.server/etc/grid/config.xml
</span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""><a href="mailto:omero@sripl-ig-oms01:/home/OMS/apps/OMERO/OMERO.server$" class="">omero@sripl-ig-oms01:/home/OMS/apps/OMERO/OMERO.server$</a> bin/omero
admin restart</span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">Waiting on shutdown. Use CTRL-C to exit</span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">.<span style="background:yellow;mso-highlight:yellow" class="">No descriptor given</span>. Using etc/grid/default.xml</span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">Waiting on startup. Use CTRL-C to exit</span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""> </span><o:p class=""></o:p></p>
<p class="MsoNormal"><span lang="FR-CA" style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""><a href="mailto:omero@sripl-ig-oms01:/home/OMS/apps/OMERO/OMERO.server$" class="">omero@sripl-ig-oms01:/home/OMS/apps/OMERO/OMERO.server$</a>
vi etc/grid/config.xml</span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""><icegrid><!--</span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""> </span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""> This file was generated at Tue Aug 4 14:54:52 2015 by the OmeroConfig system.</span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""> Do not edit directly but see bin/omero config for details.</span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""> This file may be included into your IceGrid application.</span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""> </span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">--><properties id="__ACTIVE__"><property name="omero.config.profile" value="default" /><property name="omero.config.version" value="5.1.0" /><property
name="omero.data.dir" value="/home/OMS/OMERO.data" /><property name="omero.db.name" value="omero_database" /><property name="omero.db.pass" value="password in clear" /><property name="omero.db.user" value="db_omero_usr" /><property name="omero.ldap.base" value="OU=ALL,dc=RG,dc=local"
/><property name="omero.ldap.config" value="true" /><property name="omero.ldap.group_filter" value="(&(objectClass=group)" /><property name="omero.ldap.group_mapping" value="name=cn" /><property name="omero.ldap.new_user_group" value=":query:(cn=IG_OMERO_USRs))"
/><property name="omero.ldap.password" value="other password clear" /><property name="omero.ldap.sync_on_login" value="true" /><property name="omero.ldap.urls" value="<a href="ldap://192.168.22.1:389" class="">ldap://192.168.22.1:389</a>" /><property name="omero.ldap.user_filter"
value="(objectClass=user)" /><property name="omero.ldap.user_mapping" value="omeName=sAMAccountName,firstName=givenName,lastName=sn,email=mail" /><property name="omero.ldap.username" value="cn=LDAP AD. Search,ou=devices,ou=Users,ou=RG,ou=ALL,dc=RG,dc=local"
/><property name="omero.security.password_provider" value="chainedPasswordProvider" /><property name="omero.security.trustStore" value="/home/OMS/OMERO.data/keystore/keystore.jks" /><property name="omero.web.debug" value="True" /><property name="omero.web.application_server"
value="fastcgi-tcp" /><property name="omero.web.application_host" value="<a href="http://webpage/" class="">http://webpage</a>" /></properties><properties id="default"><property name="omero.config.version" value="5.1.0" /><property name="omero.config.profile"
value="default" /><property name="omero.data.dir" value="/home/OMS/OMERO.data" /><property name="omero.db.name" value="omero_database" /><property name="omero.db.pass" value="Password in clear" /><property name="omero.db.user" value="db_omero_usr" /><property
name="omero.ldap.base" value="OU=ALL,dc=RG,dc=local" /><property name="omero.ldap.config" value="true" /><property name="omero.ldap.group_filter" value="(&(objectClass=group)" /><property name="omero.ldap.group_mapping" value="name=cn" /><property name="omero.ldap.new_user_group"
value=":query:(cn=IG_OMERO_USRs))" /><property name="omero.ldap.password" value="otherpasswordinclear" /><property name="omero.ldap.sync_on_login" value="true" /><property name="omero.ldap.urls" value="<a href="ldap://192.168.22.1:389" class="">ldap://192.168.22.1:389</a>"
/><property name="omero.ldap.user_filter" value="(objectClass=user)" /><property name="omero.ldap.user_mapping" value="omeName=sAMAccountName,firstName=givenName,lastName=sn,email=mail" /><property name="omero.ldap.username" value="cn=LDAP AD. Search,ou=devices,ou=Users,ou=RG,ou=ALL,dc=RG,dc=local"
/><property name="omero.security.password_provider" value="chainedPasswordProvider" /><property name="omero.security.trustStore" value="/home/OMS/OMERO.data/keystore/keystore.jks" /><property name="omero.web.debug" value="True" /><property name="omero.web.application_server"
value="fastcgi-tcp" /><property name="omero.web.application_host" value="<a href="http://webpage/" class="">http://webpage</a>" /></properties><include file="generated.xml" /></icegrid></span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""> </span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">Sorry for the delay, I was trying to figure out what was the problem</span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""> </span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">Now it says .NO descriptor givin using etc/grid/default.xml which I copied from OMERO.server-old/etc/grid/default.xml</span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""> </span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""> </span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""> </span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""> </span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""> </span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""> </span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""> </span><o:p class=""></o:p></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">JMarc</span><o:p class=""></o:p></p>
<div class="">
<div style="border:none;border-top:solid #B5C4DF 1.0pt;padding:3.0pt 0in 0in 0in" class="">
<p class="MsoNormal"><b class=""><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"" class="">From:</span></b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"" class=""> ome-users [<a href="mailto:ome-users-bounces@lists.openmicroscopy.org.uk" class="">mailto:ome-users-bounces@lists.openmicroscopy.org.uk</a>]
<b class="">On Behalf Of </b>Simon Li<br class="">
<b class="">Sent:</b> 4 août 2015 13:47<br class="">
<b class="">To:</b> OME User Support List<br class="">
<b class="">Subject:</b> Re: [ome-users] upgrade from 5.0.0-ice34-b19 to 5.1.2-ice35-b5</span><o:p class=""></o:p></p>
</div>
</div>
<p class="MsoNormal"> <o:p class=""></o:p></p>
<div class="">
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">From your previous output:<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">echo $ICE_HOME /usr/share/Ice-3.4.2 (does not exist)<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">How did you install Ice when you setup your older OMERO.server? Is there any way it could have been inadvertently removed?<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p class=""></o:p></p>
</div>
<div class="">
<p class="MsoNormal"> <o:p class=""></o:p></p>
<div class="">
<p class="MsoNormal">On 4 August 2015 at 18:26, Jean-Marc Champagne <<a href="mailto:jean-marc.champagne@mhi-rc.org" target="_blank" class="">jean-marc.champagne@mhi-rc.org</a>> wrote:<o:p class=""></o:p></p>
<div class="">
<div class="">
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">Yes it is my own server that is use only for Omero, before the upgrade I had OMERO.server-5.0.0-ice34-b19
installed and it was working fine,</span><o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">Then I tried to install Omero.server-5.1.2-ice35-b45 which was installed fine but I had
</span><o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="background:yellow" class="">ERROR: Ice version mismatch!</span><o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> Your OMERO code has been compiled using Ice version 3.5.1<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> but you seem to have Ice version 3.4.2 installed. If you need<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> help understanding this issue, please send this error message<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> to the OME community:<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">environment variable are set has<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">echo $JAVA_HOME /usr/lib/jvm/java-7<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">#export JAVA_HOME=/usr/lib/jvm/java-6-sun
<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> lrwxrwxrwx 1 root root 24 Feb 26 2012 default-java -> java-1.6.0-openjdk-amd64<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">a lrwxrwxrwx 1 root root 20 Jul 12 2013 java-1.6.0-openjdk-amd64 -> java-6-openjdk-amd64v<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">v -rw-r--r-- 1 root root 2387 Jul 12 2013 .java-1.6.0-openjdk-amd64.jinfo<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">a lrwxrwxrwx 1 root root 20 Jul 3 2013 java-1.7.0-openjdk-amd64 -> java-7-openjdk-amd64<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">i -rw-r--r-- 1 root root 2439 Jul 3 2013 .java-1.7.0-openjdk-amd64.jinfo<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">l drwxr-xr-x 5 root root 4096 Feb 27 2014 java-6-openjdk-amd64<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">a drwxr-xr-x 3 root root 4096 Feb 27 2014 java-6-openjdk-common<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">b lrwxrwxrwx 1 root root 19 Jun 9 2011 java-6-sun -> java-6-sun-1.6.0.26<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">l drwxr-xr-x 8 root root 4096 Feb 27 2014 java-6-sun-1.6.0.26<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">e -rw-r--r-- 1 root root 2793 Jun 9 2011 .java-6-sun.jinfo<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> drwxr-xr-x 7 root root 4096 Feb 27 2014 java-7-openjdk-amd64<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> drwxr-xr-x 3 root root 4096 Feb 27 2014 java-7-openjdk-common<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> drwxr-xr-x 8 root root 4096 Jul 31 15:28 java-7-oracle<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> lrwxrwxrwx 1 root root 4096 aug 4 10:48 java-7<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> -rw-r--r-- 1 root root 2586 Jul 31 15:28 .java-7-oracle.jinfo<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">echo $ICE_HOME /usr/share/Ice-3.4.2 (does not exist)<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> drwxr-xr-x 2 root root 4096 Feb 27 2014 icedtea-web<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">echo $POSTGRES_HOME /usr/lib/postgresql/9.1 replaced by /usr/lib/postgresql/9.4<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> drwxr-xr-x 4 root root 4096 Feb 27 2014 9.1 */etc/postgresql/9.4/main/prostgresql.conf port 5432<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> drwxr-xr-x 4 root root 4096 Jul 28 12:11 9.4 */etc/postgresql/9.1/main/prostgresql.conf port 5433<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">echo $OMERO_PREFIX /home/OMS/apps/OMERO/OMERO.server<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">export OMERO_PREFIX=~/apps/OMERO/OMERO/OMERO.server
<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">echo $PATH /usr/local/bin:/usr/bin:/bin:/usr/local/games:/usr/games:/usr/lib/jvm/java-6-sun/bin:/usr/share/Ice-3.4.2:/usr/lib/postgresql/9.1/bin:/home/OMS/apps/OMERO/OMERO.server/bin<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">export PATH=$PATH:$JAVA_HOME/bin:$ICE_HOME:$POSTGRES_HOME/bin:$OMERO_PREFIX/bin<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">export PYTHONPATH=/usr/lib/pymodules/python2.6:$PYTHONPATH<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> echo $PYTHONPATH /usr/lib/pymodules/python2.7:<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">export LD_LIBRARY_PATH=/usr/share/java:/usr/lib:$LD_LIBRARY_PATH<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> echo $LD_LIBRARY_PATH /usr/share/java:/usr/lib:<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""> </span><o:p class=""></o:p></p>
<div class="">
<div style="border:none;border-top:solid #B5C4DF 1.0pt;padding:3.0pt 0in 0in 0in" class="">
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><b class=""><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"" class="">From:</span></b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"" class="">
ome-users [mailto:<a href="mailto:ome-users-bounces@lists.openmicroscopy.org.uk" target="_blank" class="">ome-users-bounces@lists.openmicroscopy.org.uk</a>]
<b class="">On Behalf Of </b>Simon Li<br class="">
<b class="">Sent:</b> 4 août 2015 13:15</span><o:p class=""></o:p></p>
<div class="">
<div class="">
<p class="MsoNormal"><br class="">
<b class="">To:</b> OME User Support List<br class="">
<b class="">Subject:</b> Re: [ome-users] upgrade from 5.0.0-ice34-b19 to 5.1.2-ice35-b5<o:p class=""></o:p></p>
</div>
</div>
</div>
</div>
<div class="">
<div class="">
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p class=""></o:p></p>
<div class="">
<div class="">
<p class="MsoNormal" style="mso-margin-top-alt:auto;margin-bottom:12.0pt">It looks like Debian 6 has the very old zeroc-ice33 in it's repos. Is this your own server, or was it setup by someone else? If OMERO was previously running then ice may have been installed
in a non-standard location, which means you'll need to setup some environment variables e.g. PATH, PYTHONPATH.<o:p class=""></o:p></p>
</div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Simon<o:p class=""></o:p></p>
</div>
<div class="">
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p class=""></o:p></p>
<div class="">
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">On 4 August 2015 at 18:11, Jean-Marc Champagne <<a href="mailto:jean-marc.champagne@mhi-rc.org" target="_blank" class="">jean-marc.champagne@mhi-rc.org</a>> wrote:<o:p class=""></o:p></p>
<div class="">
<div class="">
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">It’s installed on Debian 6
</span><o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">Linux version 3.2.0-4-amd64 (<a href="mailto:debian-kernel@lists.debian.org" target="_blank" class="">debian-kernel@lists.debian.org</a>)
(gcc version 4.6.3 (Debian 4.6.3-14) ) #1 SMP Debian 3.2.54-2</span><o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""> </span><o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="FR-CA" style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""><a href="mailto:omero@sripl-ig-oms01:/home/OMS/apps/OMERO/OMERO.server$" target="_blank" class="">omero@sripl-ig-oms01:/home/OMS/apps/OMERO/OMERO.server$</a>
icegridnode --version</span><o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="FR-CA" style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">-bash: icegridnode: command not found</span><o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="FR-CA" style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""> </span><o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="FR-CA" style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""><a href="mailto:omero@sripl-ig-oms01:/home/OMS/apps/OMERO/OMERO.server$" target="_blank" class="">omero@sripl-ig-oms01:/home/OMS/apps/OMERO/OMERO.server$</a>
python -c 'import Ice; print Ice.stringVersion()'</span><o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">Traceback (most recent call last):</span><o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""> File "<string>", line 1, in <module></span><o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">ImportError: No module named Ice</span><o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""> </span><o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class="">Thanks for the quick reply
</span><o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""> </span><o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""> </span><o:p class=""></o:p></p>
<div class="">
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><b class=""><span style="font-size:10.0pt;font-family:"Arial","sans-serif";color:blue" class="">JMarc</span></b><o:p class=""></o:p></p>
</div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D" class=""> </span><o:p class=""></o:p></p>
<div class="">
<div style="border:none;border-top:solid #B5C4DF 1.0pt;padding:3.0pt 0in 0in 0in" class="">
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><b class=""><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"" class="">From:</span></b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"" class="">
ome-users [mailto:<a href="mailto:ome-users-bounces@lists.openmicroscopy.org.uk" target="_blank" class="">ome-users-bounces@lists.openmicroscopy.org.uk</a>]
<b class="">On Behalf Of </b>Simon Li<br class="">
<b class="">Sent:</b> 4 août 2015 13:03<br class="">
<b class="">To:</b> OME User Support List</span><o:p class=""></o:p></p>
<div class="">
<div class="">
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><br class="">
<b class="">Subject:</b> Re: [ome-users] upgrade from 5.0.0-ice34-b19 to 5.1.2-ice35-b5<o:p class=""></o:p></p>
</div>
</div>
</div>
</div>
<div class="">
<div class="">
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p class=""></o:p></p>
<div class="">
<div class="">
<div class="">
<div class="">
<div class="">
<p class="MsoNormal" style="mso-margin-top-alt:auto;margin-bottom:12.0pt">Hi Jean-Marc<o:p class=""></o:p></p>
</div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;margin-bottom:12.0pt">What operating system are you using (including the full version)? The ice poackage might have a different name.<o:p class=""></o:p></p>
</div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;margin-bottom:12.0pt">Can you run the following two commands in a console and paste the output?<br class="">
<br class="">
icegridnode --version<br class="">
<br class="">
python -c 'import Ice; print Ice.stringVersion()'<o:p class=""></o:p></p>
</div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Thanks, Simon<o:p class=""></o:p></p>
</div>
<div class="">
<div class="">
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p class=""></o:p></p>
</div>
</div>
</div>
<div class="">
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p class=""></o:p></p>
<div class="">
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">On 4 August 2015 at 17:38, Jean-Marc Champagne <<a href="mailto:jean-marc.champagne@mhi-rc.org" target="_blank" class="">jean-marc.champagne@mhi-rc.org</a>> wrote:<o:p class=""></o:p></p>
<div class="">
<div class="">
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="color:#1F497D" class="">I re-installed it using Omero.server-5.1.2-ice34-b45 file downloaded from the Omero web site</span><o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="color:#1F497D" class=""><image001.png></span><o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="color:#1F497D" class=""> </span><o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="color:#1F497D" class="">And here’s the error msg I get</span><o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="color:#1F497D" class=""><image002.png></span><o:p class=""></o:p></p>
<div class="">
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><b class=""><span style="font-size:10.0pt;font-family:"Arial","sans-serif";color:blue" class=""> </span></b><o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><b class=""><span style="font-size:10.0pt;font-family:"Arial","sans-serif";color:blue" class=""> </span></b><o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><b class=""><span style="font-size:10.0pt;font-family:"Arial","sans-serif";color:blue" class=""><image003.png></span></b><o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:10.0pt;font-family:"Arial","sans-serif"" class=""> </span><o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:10.0pt;font-family:"Arial","sans-serif"" class="">I verified if Ice was installed to find out it was not using
</span><o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:10.0pt;font-family:"Arial","sans-serif"" class="">dpkg -s zeroc-ice34</span><o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:10.0pt;font-family:"Arial","sans-serif"" class="">dpkg-query: package 'zeroc-ice34' is not installed and no information is available</span><o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:10.0pt;font-family:"Arial","sans-serif"" class="">Use dpkg --info (= dpkg-deb --info) to examine archive files,</span><o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:10.0pt;font-family:"Arial","sans-serif"" class="">and dpkg --contents (= dpkg-deb --contents) to list their contents.</span><o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:10.0pt;font-family:"Arial","sans-serif"" class=""> </span><o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:10.0pt;font-family:"Arial","sans-serif"" class="">I went to the community and Maria had the same problem which she use to fix the probleme… what is the long
line she is refering to ?</span><o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:10.0pt;font-family:"Arial","sans-serif"" class=""> </span><o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:10.0pt;font-family:"Arial","sans-serif"" class=""> </span><o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="font-size:10.0pt;font-family:"Arial","sans-serif"" class=""><image004.png></span><o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><b class=""><span style="font-size:10.0pt;font-family:"Arial","sans-serif";color:blue" class="">JMarc
</span></b><o:p class=""></o:p></p>
</div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span style="color:#1F497D" class=""> </span><o:p class=""></o:p></p>
<div class="">
<div style="border:none;border-top:solid #B5C4DF 1.0pt;padding:3.0pt 0in 0in 0in" class="">
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><b class=""><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"" class="">From:</span></b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"" class="">
ome-users [mailto:<a href="mailto:ome-users-bounces@lists.openmicroscopy.org.uk" target="_blank" class="">ome-users-bounces@lists.openmicroscopy.org.uk</a>]
<b class="">On Behalf Of </b>Sebastien Besson (Staff)<br class="">
<b class="">Sent:</b> 1 août 2015 08:15<br class="">
<b class="">To:</b> users OME<br class="">
<b class="">Subject:</b> Re: [ome-users] upgrade from 5.0.0-ice34-b19 to 5.1.2-ice35-b5</span><o:p class=""></o:p></p>
</div>
</div>
<div class="">
<div class="">
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Hi Jean-Marc,
<o:p class=""></o:p></p>
<div class="">
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p class=""></o:p></p>
</div>
<div class="">
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">as we already suggested in the previous thread [1] [2], if you have Ice 3.4<o:p class=""></o:p></p>
</div>
<div class="">
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">installed via your package manager, could you try downloading the Ice 3.4<o:p class=""></o:p></p>
</div>
<div class="">
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">server and retry to start the server?<o:p class=""></o:p></p>
</div>
<div class="">
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">The upgrade of your version of Ice depends on your Linux distribution. More<o:p class=""></o:p></p>
</div>
<div class="">
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">information is available on the Ice 3.5 downloads page [3].<o:p class=""></o:p></p>
</div>
<div class="">
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p class=""></o:p></p>
</div>
<div class="">
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Best,<o:p class=""></o:p></p>
</div>
<div class="">
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Sebastien<o:p class=""></o:p></p>
</div>
<div class="">
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p class=""></o:p></p>
</div>
<div class="">
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">[1] <a href="http://lists.openmicroscopy.org.uk/pipermail/ome-users/2015-July/005508.html" target="_blank" class="">http://lists.openmicroscopy.org.uk/pipermail/ome-users/2015-July/005508.html</a><o:p class=""></o:p></p>
</div>
<div class="">
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">[2] <a href="http://lists.openmicroscopy.org.uk/pipermail/ome-users/2015-July/005509.html" target="_blank" class="">http://lists.openmicroscopy.org.uk/pipermail/ome-users/2015-July/005509.html</a><o:p class=""></o:p></p>
</div>
<div class="">
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">[3] <a href="https://zeroc.com/download_3_5_1.html" target="_blank" class="">https://zeroc.com/download_3_5_1.html</a><o:p class=""></o:p></p>
</div>
<div class="">
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p class=""></o:p></p>
<div class="">
<blockquote style="margin-top:5.0pt;margin-bottom:5.0pt" class="">
<div class="">
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">On 31 Jul 2015, at 15:18, Jean-Marc Champagne <<a href="mailto:jean-marc.champagne@mhi-rc.org" target="_blank" class="">jean-marc.champagne@mhi-rc.org</a>> wrote:<o:p class=""></o:p></p>
</div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p class=""></o:p></p>
<div class="">
<div class="">
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">I ran
<a href="http://www.openmicroscopy.org/site/support/omero5.1/sysadmins/server-upgrade.html#omero-web-configuration" target="_blank" class="">
http://www.openmicroscopy.org/site/support/omero5.1/sysadmins/server-upgrade.html#omero-web-configuration</a> procedures, and had to upgrade postgres from 9.1 to 9.4 to be able to set it up.<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">psql -h localhost -U db_omero_usr omero_database < sql/psql/OMERO5.1__1/OMERO5.0__0.sql -p 5433<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">UPDATE 1<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> status<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">---------------------------------------------------------------------<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> +<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> +<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> +<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">YOU HAVE SUCCESSFULLY UPGRADED YOUR DATABASE TO VERSION OMERO5.1__1+<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> +<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> +<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">(1 row)<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">COMMIT<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Reindex was fine and so was the vacuum analyse<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">But when started omero, I received this error<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">How do I upgrade ICE ?<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Any help would be greatly appreciated…<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><a href="mailto:postgres@sripl-ig-oms01:/home/OMS/apps/OMERO/OMERO.server$" target="_blank" class="">postgres@sripl-ig-oms01:/home/OMS/apps/OMERO/OMERO.server$</a>
<span style="background:yellow" class="">bin/omero admin start</span><o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Traceback (most recent call last):<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> File "bin/omero", line 97, in <module><o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> import omero.cli<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> File "/home/OMS/apps/OMERO/OMERO.server-5.1.2-ice35-b45/lib/python/omero/__init__.py", line 43, in <module><o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> raise Exception(msg)<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">Exception:<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">
<span style="background:yellow" class="">ERROR: Ice version mismatch!</span><o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> Your OMERO code has been compiled using Ice version 3.5.1<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> but you seem to have Ice version 3.4.2 installed. If you need<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> help understanding this issue, please send this error message<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> to the OME community:<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">
<a href="http://www.openmicroscopy.org/site/community" target="_blank" class="">http://www.openmicroscopy.org/site/community</a><o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> Debugging Info:<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> --------------<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> VERSION=5.1.2-ice35-b45<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> PYTHONPATH=/home/OMS/apps/OMERO/OMERO.server-5.1.2-ice35-b45/lib/python:/home/OMS/apps/OMERO/OMERO.server-5.1.2-ice35-b45/var/lib:/home/OMS/apps/OMERO/OMERO.server-5.1.2-ice35-b45/bin:/usr/lib/pymodules/python2.7:/home/OMS/apps/OMERO/OMERO.server-5.1.2-ice35-b45:/usr/lib/python2.7:/usr/lib/python2.7/plat-linux2:/usr/lib/python2.7/lib-tk:/usr/lib/python2.7/lib-old:/usr/lib/python2.7/lib-dynload:/usr/local/lib/python2.7/dist-packages:/usr/lib/python2.7/dist-packages:/usr/lib/python2.7/dist-packages/PIL:/usr/lib/python2.7/dist-packages/gtk-2.0:/home/OMS/apps/OMERO/OMERO.server-5.1.2-ice35-b45/lib/fallback<o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p class=""></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><b class=""><span lang="FR-CA" style="font-size:10.0pt;font-family:"Arial","sans-serif";color:blue" class="">JMarc</span></b><o:p class=""></o:p></p>
</div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">_______________________________________________<br class="">
ome-users mailing list<br class="">
<a href="mailto:ome-users@lists.openmicroscopy.org.uk" target="_blank" class="">ome-users@lists.openmicroscopy.org.uk</a><br class="">
<a href="http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users" target="_blank" class="">http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users</a><o:p class=""></o:p></p>
</div>
</blockquote>
</div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p class=""></o:p></p>
</div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><br class="">
<span style="font-size:10.0pt" class="">The University of Dundee is a registered Scottish Charity, No: SC015096</span>
<o:p class=""></o:p></p>
</div>
</div>
</div>
<div class="">
<div class="">
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><br class="">
<span style="font-size:10.0pt" class="">The University of Dundee is a registered Scottish Charity, No: SC015096</span>
<o:p class=""></o:p></p>
</div>
</div>
</div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;margin-bottom:12.0pt"><br class="">
_______________________________________________<br class="">
ome-users mailing list<br class="">
<a href="mailto:ome-users@lists.openmicroscopy.org.uk" target="_blank" class="">ome-users@lists.openmicroscopy.org.uk</a><br class="">
<a href="http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users" target="_blank" class="">http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users</a><o:p class=""></o:p></p>
</div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p class=""></o:p></p>
</div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><br class="">
<span style="font-size:10.0pt" class="">The University of Dundee is a registered Scottish Charity, No: SC015096</span>
<o:p class=""></o:p></p>
</div>
</div>
</div>
<div class="">
<div class="">
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><br class="">
<span style="font-size:10.0pt" class="">The University of Dundee is a registered Scottish Charity, No: SC015096</span>
<o:p class=""></o:p></p>
</div>
</div>
</div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;margin-bottom:12.0pt"><br class="">
_______________________________________________<br class="">
ome-users mailing list<br class="">
<a href="mailto:ome-users@lists.openmicroscopy.org.uk" target="_blank" class="">ome-users@lists.openmicroscopy.org.uk</a><br class="">
<a href="http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users" target="_blank" class="">http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users</a><o:p class=""></o:p></p>
</div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"> <o:p class=""></o:p></p>
</div>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><br class="">
<span style="font-size:10.0pt" class="">The University of Dundee is a registered Scottish Charity, No: SC015096</span>
<o:p class=""></o:p></p>
</div>
</div>
</div>
<div class="">
<div class="">
<p class="MsoNormal"><br class="">
<span style="font-size:10.0pt" class="">The University of Dundee is a registered Scottish Charity, No: SC015096</span>
<o:p class=""></o:p></p>
</div>
</div>
</div>
<p class="MsoNormal" style="margin-bottom:12.0pt"><br class="">
_______________________________________________<br class="">
ome-users mailing list<br class="">
<a href="mailto:ome-users@lists.openmicroscopy.org.uk" class="">ome-users@lists.openmicroscopy.org.uk</a><br class="">
<a href="http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users" target="_blank" class="">http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users</a><o:p class=""></o:p></p>
</div>
<p class="MsoNormal"> <o:p class=""></o:p></p>
</div>
<p class="MsoNormal"><br class="">
<span style="font-size:10.0pt" class="">The University of Dundee is a registered Scottish Charity, No: SC015096</span>
<o:p class=""></o:p></p>
</div>
<p class="MsoNormal">_______________________________________________<br class="">
ome-users mailing list<br class="">
<a href="mailto:ome-users@lists.openmicroscopy.org.uk" class="">ome-users@lists.openmicroscopy.org.uk</a><br class="">
<a href="http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users" class="">http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users</a><o:p class=""></o:p></p>
</div>
</blockquote>
</div>
<p class="MsoNormal"> <o:p class=""></o:p></p>
</div>
<p class="MsoNormal"><br class="">
<span style="font-size:10.0pt" class="">The University of Dundee is a registered Scottish Charity, No: SC015096</span>
<o:p class=""></o:p></p>
</div>
<p class="MsoNormal">_______________________________________________<br class="">
ome-users mailing list<br class="">
<a href="mailto:ome-users@lists.openmicroscopy.org.uk" class="">ome-users@lists.openmicroscopy.org.uk</a><br class="">
<a href="http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users" class="">http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users</a><o:p class=""></o:p></p>
</div>
</blockquote>
</div>
<p class="MsoNormal"><o:p class=""> </o:p></p>
</div>
</div>
</div>
<p class="MsoNormal"><br class="">
<span style="font-size:10.0pt" class="">The University of Dundee is a registered Scottish Charity, No: SC015096</span>
<o:p class=""></o:p></p>
</div>
</div>
_______________________________________________<br class="">
ome-users mailing list<br class="">
<a href="mailto:ome-users@lists.openmicroscopy.org.uk" class="">ome-users@lists.openmicroscopy.org.uk</a><br class="">
http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users<br class="">
</div>
</blockquote>
</div>
<br class="">
</div>
<br>
<span style="font-size:10pt;">The University of Dundee is a registered Scottish Charity, No: SC015096</span>
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