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<p class="MsoPlainText">I have a similar experience with Bio-Formats Export as Patrick (see below). It bugs out and doesn't export anything.<o:p></o:p></p>
<p class="MsoPlainText"><o:p> </o:p></p>
<p class="MsoPlainText">But I figured out that if the file name had a space, it doesn't export. The function works fine if there's no space in the name. So I wrote a macro to create a name without any spaces, and I was able to export all my images.<o:p></o:p></p>
<p class="MsoPlainText"><o:p> </o:p></p>
<p class="MsoPlainText">Hope this helps.<o:p></o:p></p>
<p class="MsoPlainText"><o:p> </o:p></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Bookman Old Style","serif"">Sho Fujisawa<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Bookman Old Style","serif"">Sr. Digital Microscopist<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Bookman Old Style","serif"">Molecular Cytology Core Facility<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Bookman Old Style","serif"">Memorial Sloan-Kettering Cancer Center<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Bookman Old Style","serif"">417 E. 68th St.
<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Bookman Old Style","serif"">Zuckerman Room 1834<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Bookman Old Style","serif"">New York NY 10065<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Bookman Old Style","serif"">(212) 639-6667<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Bookman Old Style","serif"">(646) 888-2186<o:p></o:p></span></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoPlainText"><o:p> </o:p></p>
<p class="MsoPlainText"><o:p> </o:p></p>
<p class="MsoPlainText">Message-ID:<o:p></o:p></p>
<p class="MsoPlainText"> <<a href="mailto:CADN69ykBXDzBsUJxEA6+b8QnLinHSYTnMAd2W0POwTeaqZYhUA@mail.gmail.com">CADN69ykBXDzBsUJxEA6+b8QnLinHSYTnMAd2W0POwTeaqZYhUA@mail.gmail.com</a>><o:p></o:p></p>
<p class="MsoPlainText">Content-Type: text/plain; charset="utf-8"<o:p></o:p></p>
<p class="MsoPlainText"><o:p> </o:p></p>
<p class="MsoPlainText">Hi Patrick,<o:p></o:p></p>
<p class="MsoPlainText"><o:p> </o:p></p>
<p class="MsoPlainText">You might be able to obtain more information about what's going wrong using the "debugging JVM hangs" instructions [1] on the ImageJ web site.<o:p></o:p></p>
<p class="MsoPlainText"><o:p> </o:p></p>
<p class="MsoPlainText">You could also try with a different version of Java [2, 3] and see if that makes a difference.<o:p></o:p></p>
<p class="MsoPlainText"><o:p> </o:p></p>
<p class="MsoPlainText">Regards,<o:p></o:p></p>
<p class="MsoPlainText">Curtis<o:p></o:p></p>
<p class="MsoPlainText"><o:p> </o:p></p>
<p class="MsoPlainText">[1] <a href="http://imagej.net/Debugging#Debugging_JVM_hangs">
http://imagej.net/Debugging#Debugging_JVM_hangs</a><o:p></o:p></p>
<p class="MsoPlainText">[2]<o:p></o:p></p>
<p class="MsoPlainText"><a href="http://imagej.net/FAQ#How_do_I_launch_ImageJ_with_a_different_version_of_Java.3F">http://imagej.net/FAQ#How_do_I_launch_ImageJ_with_a_different_version_of_Java.3F</a><o:p></o:p></p>
<p class="MsoPlainText">[3] <a href="http://imagej.net/FAQ#How_do_I_set_up_Java_6_on_OS_X.3F">
http://imagej.net/FAQ#How_do_I_set_up_Java_6_on_OS_X.3F</a><o:p></o:p></p>
<p class="MsoPlainText"><o:p> </o:p></p>
<p class="MsoPlainText"><o:p> </o:p></p>
<p class="MsoPlainText">On Thu, Jul 30, 2015 at 6:44 AM, Patrick Weber <<a href="mailto:mail.pweber@gmail.com">mail.pweber@gmail.com</a>><o:p></o:p></p>
<p class="MsoPlainText">wrote:<o:p></o:p></p>
<p class="MsoPlainText"><o:p> </o:p></p>
<p class="MsoPlainText">> Dear all,<o:p></o:p></p>
<p class="MsoPlainText">><o:p> </o:p></p>
<p class="MsoPlainText">> I encountered a problem using the Bio-Formats exporter today. Every
<o:p></o:p></p>
<p class="MsoPlainText">> time I want to use it to export opened and processed (and even
<o:p></o:p></p>
<p class="MsoPlainText">> un-processed) OME.TIFF files, Fiji crashes, i.e. it shows Bio-formats
<o:p></o:p></p>
<p class="MsoPlainText">> exporter in the main window but stops working...<o:p></o:p></p>
<p class="MsoPlainText">><o:p> </o:p></p>
<p class="MsoPlainText">> I already rebooted, restarted Fiji several times, updated to an
<o:p></o:p></p>
<p class="MsoPlainText">> earlier version of Fiji/ImageJ but none of it worked... There is also
<o:p></o:p></p>
<p class="MsoPlainText">> no error message or something.<o:p></o:p></p>
<p class="MsoPlainText">><o:p> </o:p></p>
<p class="MsoPlainText">> Version Information:<o:p></o:p></p>
<p class="MsoPlainText">><o:p> </o:p></p>
<p class="MsoPlainText">> Fiji - Version 1.50a<o:p></o:p></p>
<p class="MsoPlainText">> Java - 1.8.0_51 (64-bit)<o:p></o:p></p>
<p class="MsoPlainText">> Mac OS X Yosemite 10.10.3<o:p></o:p></p>
<p class="MsoPlainText">><o:p> </o:p></p>
<p class="MsoPlainText">> I attached a screenshot showing the process after I chose the exporter
<o:p></o:p></p>
<p class="MsoPlainText">> plugin. As I mentioned there is no error message or something, but I
<o:p></o:p></p>
<p class="MsoPlainText">> even have to quit Fiji using the activity monitor.<o:p></o:p></p>
<p class="MsoPlainText">><o:p> </o:p></p>
<p class="MsoPlainText">> Hope you can help me with this. Thanks a lot!<o:p></o:p></p>
<p class="MsoPlainText">><o:p> </o:p></p>
<p class="MsoPlainText">> Patrick<o:p></o:p></p>
<p class="MsoPlainText">><o:p> </o:p></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Bookman Old Style","serif""><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Bookman Old Style","serif""><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Bookman Old Style","serif"">Sho Fujisawa<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Bookman Old Style","serif"">Sr. Digital Microscopist<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Bookman Old Style","serif"">Molecular Cytology Core Facility<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Bookman Old Style","serif"">Memorial Sloan-Kettering Cancer Center<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Bookman Old Style","serif"">417 E. 68th St.
<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Bookman Old Style","serif"">Zuckerman Room 1834<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Bookman Old Style","serif"">New York NY 10065<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Bookman Old Style","serif"">(212) 639-6667<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Bookman Old Style","serif"">(646) 888-2186<o:p></o:p></span></p>
<p class="MsoNormal"><o:p> </o:p></p>
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