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<p class="MsoNormal"><a name="_MailEndCompose"><span style="color:#1F497D">Hi Sebastian,<o:p></o:p></span></a></p>
<p class="MsoNormal"><span style="color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D">Thanks for the prompt reply.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D">Tested now with version 5.1.2 and the result is the same.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D">Archive </span>PexSeriesFtotal1_w2Brightfield_s2.zip
<span style="color:#1F497D">was uploaded and contains ND and corresponding partial results.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D"><o:p> </o:p></span></p>
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<p class="MsoNormal"><span style="color:#1F497D">Best regards,<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D">Dotan<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="color:#1F497D"><o:p> </o:p></span></p>
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<p class="MsoNormal"><b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">From:</span></b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif""> ome-users [mailto:ome-users-bounces@lists.openmicroscopy.org.uk]
<b>On Behalf Of </b>Sebastien Besson (Staff)<br>
<b>Sent:</b> Sunday, July 05, 2015 9:50 PM<br>
<b>To:</b> ome-users@lists.openmicroscopy.org.uk OME-users<br>
<b>Subject:</b> Re: [ome-users] Can't open ND file of interupted sequance.<o:p></o:p></span></p>
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<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Hi Dotan, <o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">thank you very much for reporting your issue.<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">Could you please let us know which version of Bio-Formats you have<o:p></o:p></p>
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<p class="MsoNormal">installed? "Help > About Plugins > Bio-Formats Plugins" (or<o:p></o:p></p>
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<p class="MsoNormal">"Help > About Plugins > LOCI Plugins” for old versions) should show the<o:p></o:p></p>
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<p class="MsoNormal">version number and date.<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">If you are using an older version than the latest release (5.1.2), could you<o:p></o:p></p>
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<p class="MsoNormal">try upgrading to the latest release and see if this solves the issue.<o:p></o:p></p>
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<p class="MsoNormal">If you are seeing this behavior with 5.1.2, it would be very helpful if you could<o:p></o:p></p>
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<p class="MsoNormal">send the dataset in question by uploading to:<o:p></o:p></p>
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<p class="MsoNormal"><a href="http://qa.openmicroscopy.org.uk/qa/upload">http://qa.openmicroscopy.org.uk/qa/upload</a>. <o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">Best regards,<o:p></o:p></p>
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<p class="MsoNormal">Sebastien<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">On 5 Jul 2015, at 09:24, Dotan Kamber <<a href="mailto:Dotan.Kamber@eb1.co.il">Dotan.Kamber@eb1.co.il</a>> wrote:<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">Dears,<o:p></o:p></p>
<p class="MsoNormal"> <o:p></o:p></p>
<p class="MsoNormal">When trying to open multi-position ND file where the experiment did not finish (not all positions were acquired) the file cannot be opened.<o:p></o:p></p>
<p class="MsoNormal"> <o:p></o:p></p>
<p class="MsoNormal">The error received -<o:p></o:p></p>
<p class="MsoNormal">java.lang.ArithmeticException: / by zero<o:p></o:p></p>
<p class="MsoNormal"> at loci.formats.in.MetamorphReader.initFile(MetamorphReader.java:883)<o:p></o:p></p>
<p class="MsoNormal"> at loci.formats.FormatReader.setId(FormatReader.java:1317)<o:p></o:p></p>
<p class="MsoNormal"> at loci.plugins.in.ImportProcess.initializeFile(ImportProcess.java:494)<o:p></o:p></p>
<p class="MsoNormal"> at loci.plugins.in.ImportProcess.execute(ImportProcess.java:144)<o:p></o:p></p>
<p class="MsoNormal"> at loci.plugins.in.Importer.showDialogs(Importer.java:141)<o:p></o:p></p>
<p class="MsoNormal"> at loci.plugins.in.Importer.run(Importer.java:79)<o:p></o:p></p>
<p class="MsoNormal"> at loci.plugins.LociImporter.run(LociImporter.java:81)<o:p></o:p></p>
<p class="MsoNormal"> <o:p></o:p></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">The ND file can be opened if it is edited in a way that none-aquired positions are removed from the position list.</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif""> </span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">Example of ND file –</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">"NDInfoFile", Version 1.0</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">"Description", File recreated from images.</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">"StartTime1", 20150527 14:39:03.085</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">"DoTimelapse", FALSE</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">"DoStage", TRUE</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">"NStagePositions", 27</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">"Stage1", "row:D,column:19,site:1"</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">"Stage2", "row:D,column:19,site:2"</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">"Stage3", "row:D,column:19,site:3"</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">"Stage4", "row:D,column:20,site:1"</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">"Stage5", "row:D,column:20,site:2"</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">"Stage6", "row:D,column:20,site:3"</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">"Stage7", "row:D,column:21,site:1"</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">"Stage8", "row:D,column:21,site:2"</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">"Stage9", "row:D,column:21,site:3"</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">"Stage10", "row:E,column:21,site:1"</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">"Stage11", "row:E,column:21,site:2"</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">"Stage12", "row:E,column:21,site:3"</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">"Stage13", "row:E,column:20,site:1"</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">"Stage14", "row:E,column:20,site:2"</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">"Stage15", "row:E,column:20,site:3"</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">"Stage16", "row:E,column:19,site:1"</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">"Stage17", "row:E,column:19,site:2"</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">"Stage18", "row:E,column:19,site:3"</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">"Stage19", "row:F,column:19,site:1"</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">"Stage20", "row:F,column:19,site:2"</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">"Stage21", "row:F,column:19,site:3"</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">"Stage22", "row:F,column:20,site:1"</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">"Stage23", "row:F,column:20,site:2"</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">"Stage24", "row:F,column:20,site:3"</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">"Stage25", "row:F,column:21,site:1"</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">"Stage26", "row:F,column:21,site:2"</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">"Stage27", "row:F,column:21,site:3"</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">"DoWave", TRUE</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">"NWavelengths", 2</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">"WaveName1", "confmCherry"</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">"WaveName2", "Brightfield"</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">"DoZSeries", FALSE</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">"WaveInFileName", TRUE</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">"EndFile"</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif""> </span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">Best,</span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif""> </span><o:p></o:p></p>
<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">Dotan</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:12.0pt;font-family:"Times New Roman","serif"">_______________________________________________<br>
ome-users mailing list<br>
<a href="mailto:ome-users@lists.openmicroscopy.org.uk">ome-users@lists.openmicroscopy.org.uk</a><br>
<a href="http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users">http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users</a><o:p></o:p></span></p>
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</blockquote>
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<p class="MsoNormal"><span style="font-size:12.0pt;font-family:"Times New Roman","serif""><o:p> </o:p></span></p>
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<p class="MsoNormal"><span style="font-size:12.0pt;font-family:"Times New Roman","serif""><br>
</span><span style="font-size:10.0pt;font-family:"Times New Roman","serif"">The University of Dundee is a registered Scottish Charity, No: SC015096</span><span style="font-size:12.0pt;font-family:"Times New Roman","serif"">
<o:p></o:p></span></p>
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