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Hi Chris
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<div>Thank you for the feedback.</div>
<div>I could not repeat your problem. My workflow was:</div>
<div> - have 5.1.1 Bio-formats and 5.1.2 plugin in Fiji, open the image (multi-z and multi-t, a .dv) and crop and save back to OMERO -> worked fine</div>
<div> - upgrade to 5.1.2 Bio-formats and 5.1.2 plugin in Fiji, and repeat the workflow -> worked fine</div>
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<div>So I wonder, what version of Bio-formats do you have in your Fiji please ? (Help > About Plugins > Bio-format plugins….)</div>
<div>I would suggest to upgrade to 5.1.2 Bio-formats (Help > Update Fiji) and to 5.1.2 plugin <a href="http://downloads.openmicroscopy.org/omero/5.1.2/artifacts/OMERO.insight-ij-5.1.2-ice35-b45.zip">http://downloads.openmicroscopy.org/omero/5.1.2/artifacts/OMERO.insight-ij-5.1.2-ice35-b45.zip</a>.</div>
<div>In case this does not solve the problem, would you please upload your file using <a href="http://qa.openmicroscopy.org.uk/qa/upload/">http://qa.openmicroscopy.org.uk/qa/upload/</a> ?</div>
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<div>Hope this helps</div>
<div>All the best</div>
<div>Petr</div>
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<div>OME Team</div>
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<div>On 11 Jun 2015, at 17:16, "Wood, Christopher" <<a href="mailto:CJW@stowers.org">CJW@stowers.org</a>> wrote:</div>
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<div>Hi Jean-Marie,</div>
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<div>Yes, I am using Fiji.</div>
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<div>I also get this (below) when I open an image (z-stack, time series) with the plugin, crop it, and then try to save it back. If I save the cropped image to disk, then open it and save to omero, it works fine.</div>
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<div>Chris</div>
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<div>Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException</div>
<div><span class="Apple-tab-span" style="white-space:pre"></span>at org.openmicroscopy.shoola.agents.fsimporter.chooser.FileSelectionTable.allowAddToQueue(FileSelectionTable.java:405)</div>
<div><span class="Apple-tab-span" style="white-space:pre"></span>at org.openmicroscopy.shoola.agents.fsimporter.chooser.FileSelectionTable.addFiles(FileSelectionTable.java:579)</div>
<div><span class="Apple-tab-span" style="white-space:pre"></span>at org.openmicroscopy.shoola.agents.fsimporter.chooser.ImportDialog.addImageJFiles(ImportDialog.java:1608)</div>
<div><span class="Apple-tab-span" style="white-space:pre"></span>at org.openmicroscopy.shoola.agents.fsimporter.chooser.ImportDialog.propertyChange(ImportDialog.java:1671)</div>
<div><span class="Apple-tab-span" style="white-space:pre"></span>at java.beans.PropertyChangeSupport.firePropertyChange(PropertyChangeSupport.java:339)</div>
<div><span class="Apple-tab-span" style="white-space:pre"></span>at java.beans.PropertyChangeSupport.firePropertyChange(PropertyChangeSupport.java:276)</div>
<div><span class="Apple-tab-span" style="white-space:pre"></span>at java.awt.Component.firePropertyChange(Component.java:8287)</div>
<div><span class="Apple-tab-span" style="white-space:pre"></span>at org.openmicroscopy.shoola.agents.fsimporter.chooser.LocationDialog.actionPerformed(LocationDialog.java:950)</div>
<div><span class="Apple-tab-span" style="white-space:pre"></span>at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2028)</div>
<div><span class="Apple-tab-span" style="white-space:pre"></span>at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2351)</div>
<div><span class="Apple-tab-span" style="white-space:pre"></span>at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:387)</div>
<div><span class="Apple-tab-span" style="white-space:pre"></span>at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:242)</div>
<div><span class="Apple-tab-span" style="white-space:pre"></span>at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:236)</div>
<div><span class="Apple-tab-span" style="white-space:pre"></span>at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:272)</div>
<div><span class="Apple-tab-span" style="white-space:pre"></span>at java.awt.Component.processMouseEvent(Component.java:6414)</div>
<div><span class="Apple-tab-span" style="white-space:pre"></span>at javax.swing.JComponent.processMouseEvent(JComponent.java:3275)</div>
<div><span class="Apple-tab-span" style="white-space:pre"></span>at java.awt.Component.processEvent(Component.java:6179)</div>
<div><span class="Apple-tab-span" style="white-space:pre"></span>at java.awt.Container.processEvent(Container.java:2084)</div>
<div><span class="Apple-tab-span" style="white-space:pre"></span>at java.awt.Component.dispatchEventImpl(Component.java:4776)</div>
<div><span class="Apple-tab-span" style="white-space:pre"></span>at java.awt.Container.dispatchEventImpl(Container.java:2142)</div>
<div><span class="Apple-tab-span" style="white-space:pre"></span>at java.awt.Component.dispatchEvent(Component.java:4604)</div>
<div><span class="Apple-tab-span" style="white-space:pre"></span>at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4618)</div>
<div><span class="Apple-tab-span" style="white-space:pre"></span>at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4279)</div>
<div><span class="Apple-tab-span" style="white-space:pre"></span>at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4209)</div>
<div><span class="Apple-tab-span" style="white-space:pre"></span>at java.awt.Container.dispatchEventImpl(Container.java:2128)</div>
<div><span class="Apple-tab-span" style="white-space:pre"></span>at java.awt.Window.dispatchEventImpl(Window.java:2492)</div>
<div><span class="Apple-tab-span" style="white-space:pre"></span>at java.awt.Component.dispatchEvent(Component.java:4604)</div>
<div><span class="Apple-tab-span" style="white-space:pre"></span>at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:717)</div>
<div><span class="Apple-tab-span" style="white-space:pre"></span>at java.awt.EventQueue.access$400(EventQueue.java:82)</div>
<div><span class="Apple-tab-span" style="white-space:pre"></span>at java.awt.EventQueue$2.run(EventQueue.java:676)</div>
<div><span class="Apple-tab-span" style="white-space:pre"></span>at java.awt.EventQueue$2.run(EventQueue.java:674)</div>
<div><span class="Apple-tab-span" style="white-space:pre"></span>at java.security.AccessController.doPrivileged(Native Method)</div>
<div><span class="Apple-tab-span" style="white-space:pre"></span>at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:86)</div>
<div><span class="Apple-tab-span" style="white-space:pre"></span>at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:97)</div>
<div><span class="Apple-tab-span" style="white-space:pre"></span>at java.awt.EventQueue$3.run(EventQueue.java:690)</div>
<div><span class="Apple-tab-span" style="white-space:pre"></span>at java.awt.EventQueue$3.run(EventQueue.java:688)</div>
<div><span class="Apple-tab-span" style="white-space:pre"></span>at java.security.AccessController.doPrivileged(Native Method)</div>
<div><span class="Apple-tab-span" style="white-space:pre"></span>at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:86)</div>
<div><span class="Apple-tab-span" style="white-space:pre"></span>at java.awt.EventQueue.dispatchEvent(EventQueue.java:687)</div>
<div><span class="Apple-tab-span" style="white-space:pre"></span>at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)</div>
<div><span class="Apple-tab-span" style="white-space:pre"></span>at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)</div>
<div><span class="Apple-tab-span" style="white-space:pre"></span>at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)</div>
<div><span class="Apple-tab-span" style="white-space:pre"></span>at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)</div>
<div><span class="Apple-tab-span" style="white-space:pre"></span>at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)</div>
<div><span class="Apple-tab-span" style="white-space: pre;"></span>at java.awt.EventDispatchThread.run(EventDispatchThread.java:122) </div>
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<span style="font-weight:bold">From: </span>ome-users on behalf of jburel<br>
<span style="font-weight:bold">Reply-To: </span>"<a href="mailto:ome-users@lists.openmicroscopy.org.uk">ome-users@lists.openmicroscopy.org.uk</a>"<br>
<span style="font-weight:bold">Date: </span>Thursday, June 11, 2015 at 12:34 AM<br>
<span style="font-weight:bold">To: </span>"<a href="mailto:ome-users@lists.openmicroscopy.org.uk">ome-users@lists.openmicroscopy.org.uk</a>"<br>
<span style="font-weight:bold">Subject: </span>Re: [ome-users] ImageJ-Omero problem<br>
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<div>Hi Chris</div>
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<div>I assume you are using Fiji</div>
<div>The problem is due to a version conflict of the drawing library shipped with the plugin and the one available in fiji. Fiji comes with a most recent version of the library.</div>
<div>It is not platform specific.</div>
<div>Thanks for reporting the problem</div>
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<div>Cheers</div>
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<div>Jmarie</div>
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<span style="font-size:10pt;">The University of Dundee is a registered Scottish Charity, No: SC015096</span></div>
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