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Hi Frans,
<div class=""><br class="">
</div>
<div class="">thanks for the precision. I did some testing of the script/CLI interaction using a minimal</div>
<div class="">script (<a href="https://github.com/sbesson/omero-user-scripts/blob/master/cli_scripts/test.py" class="">https://github.com/sbesson/omero-user-scripts/blob/master/cli_scripts/test.py</a>)</div>
<div class="">against the latest version of the server on the 5.1.x development line.</div>
<div class=""><br class="">
</div>
<div class="">Below are the output of the `script run` command:</div>
<div class=""><br class="">
</div>
<div class="">- with -g GROUP included as part of the command arguments</div>
<div class=""><br class="">
</div>
<span class="">$ bin/omero script run /opt/ome/omero-user-scripts/cli_scripts/test.py <br class="">
</span><span class="">Using session 6391bba5-6efd-481a-8035-ce8ef3bf371d (root@localhost:4064). Idle timeout: 10.0 min. Current group: system<br class="">
</span><span class="">Ignoring group since session key set<br class="">
</span><span class="">Joined session 6391bba5-6efd-481a-8035-ce8ef3bf371d (root@localhost:4064). Idle timeout: 10.0 min. Current group: system<br class="">
</span><span class=""><br class="">
</span>
<div class="">- without -g GROUP included in the command arguments</div>
<div class=""><br class="">
</div>
<span class="">$ bin/omero script run /opt/ome/omero-user-scripts/cli_scripts/test.py <br class="">
Using session 6391bba5-6efd-481a-8035-ce8ef3bf371d (root@localhost:4064). Idle timeout: 10.0 min. Current group: system<br class="">
Joined session 6391bba5-6efd-481a-8035-ce8ef3bf371d (root@localhost:4064). Idle timeout: 10.0 min. Current group: system<br class="">
<br class="">
As discussed on this thread, I would expect the upcoming 5.1.1 OMERO.server will</span>
<div class=""><span class="">drop the </span>unnecessary requirement to specify a group argument while using the CLI with
<div class="">a session key.</div>
<div class="">When you update the version of the OMERO.py client, this should be indicated by the</div>
<div class="">warning message pasted above (“Ignoring group since session key set”) </div>
<div class="">
<div class=""><span class=""><br class="">
</span></div>
<div class=""><span class="">As always, let us know if you encounter new issues when the new release is out.<br class="">
<br class="">
</span></div>
<div class=""><span class="">Best regards,<br class="">
Sebastien<br class="">
<br class="">
<blockquote type="cite" class="">On 18 Apr 2015, at 20:35, Frans Boogaard <<a href="mailto:fransboogaard@gmail.com" class="">fransboogaard@gmail.com</a>> wrote:<br class="">
<br class="">
Hi Sebastien,<br class="">
<br class="">
I am replying to this thread because I am taking over Pauls work on our OMERO system. <br class="">
<br class="">
We are running our scripts using something like 'OMERO.server/bin/omero script run lib/scripts/script.py ScriptParameters', in this case from the command line. <br class="">
<br class="">
The python script is not available online, but the following code is used to import the data:<br class="">
<br class="">
# Import directories to Omero<br class="">
if os.listdir(tmpDirSuccess):<br class="">
common.importDirectory(Conn, os.path.join(tmpDirSuccess), os.path.join(tmpDirSuccess), datasetIdSuccess)<br class="">
<br class="">
Where common.py contains the code mentioned by Paul before, which we now changed to explicitly . <br class="">
<br class="">
Kind regards,<br class="">
Frans<br class="">
<br class="">
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</blockquote>
<br class="">
</span></div>
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