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Hi Emil,
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<div class="">Congratulations also from our side :)</div>
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<div class="">Based on our chat, I will formalise a couple of questions that might benefit the whole community, especially about the process that you took to get this nice tool ready.</div>
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<div class="">- How did you save the layers? Did you use different images, or channels or something more internal to OMERO?</div>
<div class="">- How do you make the dataset public? I assume people are working with images in private setting for quite some time and then at the date of publication, the images are made publically available.</div>
<div class="">- Is the code of the webclient available on some public repo?</div>
<div class="">- Did you carry out any modifications on the server side?</div>
<div class="">- Will you guarantee availability of data over couple of years? 10? more?</div>
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<div class="">Kind regards,</div>
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<div class="">—</div>
<div class="">Christophe</div>
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<span style="font-weight: bold; color: rgb(61, 59, 59); display: inline;" class="">Dr Christophe Trefois, Dipl.-Ing.</span>
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<span style="color: rgb(61, 59, 59); display: inline; font-size:7.5pt;" class="">Technical Specialist / Post-Doc</span>
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This message is confidential and may contain privileged information. <br class="">
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<blockquote type="cite" class="">
<div class="">On 03 Apr 2015, at 15:46, Jason Swedlow (Staff) <<a href="mailto:j.r.swedlow@dundee.ac.uk" class="">j.r.swedlow@dundee.ac.uk</a>> wrote:</div>
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<div class="">Hi Emil</div>
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<div class="">Thanks for this update, and congrats on the publication of your paper and this data set. It’s a great example of the kind of thing we want to enable with OMERO and Bio-Formats.</div>
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<div class="">Several people have asked us to document the set-up and configuration of OMERO as a public data sharing repository. We’ll definitely try to capture your experience, as well as several others in this doc and get this included in the 5.1.1 release.</div>
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<div class="">Congrats again on this great work.</div>
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<div class="">Cheers,</div>
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<div class="">Jason</div>
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<div class="">On 31/03/2015 15:39, "Emil Rozbicki (Staff)" <<a href="mailto:e.j.rozbicki@dundee.ac.uk" class="">e.j.rozbicki@dundee.ac.uk</a>> wrote:</div>
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<div class="">Dear OME developers,</div>
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<div class="">I would like to share with you our latest achivement which couldn't have happened without your effort. We have succesfully published a light-sheet microscopy dataset together with the analysis results using OMERO as a publication platform. The
dataset is avaiable here: <a href="http://omero-cjw.lifesci.dundee.ac.uk/10.15132.10000100/" class="">
http://omero-cjw.lifesci.dundee.ac.uk/10.15132.10000100/</a> and is published alongside Nature Cell Biology manuscipt
<a href="http://dx.doi.org/10.1038/ncb3138" class="">http://dx.doi.org/10.1038/ncb3138</a>.</div>
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<div class="">Some technical details:</div>
<div class="">The original dataset has almost 100 Gigapixels while the OMERO available image holds half of it. The OMERO image contains one channel with the microscopy data and further 18 channels with the analysis results. The image served by OMERO is around
50GB, including all analysis results. The dataset is downloadable from the website with substantially compressed analysis outcomes taking it all down to 10GB.</div>
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<div class="">I would like to thank you All for making the data publication so easy.</div>
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<div class="">Regards,</div>
<div class="">Emil Rozbicki</div>
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<div class="">The University of Dundee is a registered Scottish Charity, No: SC015096</div>
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</blockquote>
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<span style="font-size:10pt;" class="">The University of Dundee is a registered Scottish Charity, No: SC015096</span>
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