<html><head><meta http-equiv="Content-Type" content="text/html charset=us-ascii"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Hi Sebastian,<div><br></div><div> Thanks for the bug report.</div><div>I've downloaded and opened your images.</div><div>Do they look correct to you when you open them with Bio-Formats?</div><div>For both images I see 2 channels (DAPI, EGFP) with 5 Z-slices and 3 Time-points, although to me the images don't look like they're moving through Z and T (they all look quite unrelated to each other).</div><div>Is it only the metadata that seems wrong to you, or are the planes actually ordered incorrectly?</div><div><br></div><div> Cheers,</div><div><br></div><div> Will.</div><div><br></div><div><br><div><div><div>On 11 Mar 2015, at 09:43, Sebastian Rhode <<a href="mailto:sebrhode@gmail.com">sebrhode@gmail.com</a>> wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><div dir="ltr">Hi,<div><br></div><div>here you can find 2 CZI sample data sets:</div><div><br></div><div><a href="https://dl.dropboxusercontent.com/u/623476/XYCZT_CH%3D2_Z%3D5_All_CH_per_Slice.czi">https://dl.dropboxusercontent.com/u/623476/XYCZT_CH%3D2_Z%3D5_All_CH_per_Slice.czi</a><br></div><div><br></div><div><a href="https://dl.dropboxusercontent.com/u/623476/XYZCT_Z%3D5_CH%3D2_Z%3D5_FullStack_per_CH.czi">https://dl.dropboxusercontent.com/u/623476/XYZCT_Z%3D5_CH%3D2_Z%3D5_FullStack_per_CH.czi</a><br></div><div><br></div><div>The 1st CZI file was acquired with the option "All Channels per Slice" --> XYCZT</div><div><br></div><div>The 2nd CZI file was acquired with the option "Full Stack per Channel" --> XYZCT</div><div><br></div><div><b>When I open both files via BioFormats the original Metadata show:</b></div><div><b><br></b></div><div><b>"All Channel per Slice" --> DimensenOrder = XYCZT -- > OK</b></div><div><b>"Full Stack per Channel" --> DimensionOrder = XYCZT --> NOK</b></div><div><b><br></b></div><div>The DimensionOrder seems to be always XYCZT, no matter what it actaully was.</div><div><br></div><div>Inside the CZI File the "officail" dimension order is:</div><div><br></div><div>"All Channel per Slice" --> <b>BTCZYX0</b> --> corresponds to XYZCT</div><div>"Full Stack per Channel" --> <b>BTCZYX0</b> --> corresponds to XYZCT</div><div><br></div><div>Would be nice to get this fixed soon ...</div><div><br></div><div>Cheers</div><div><br></div><div>Sebi</div><div><br></div><div><br></div><div><br clear="all"><div><br></div><div class="gmail_signature"><br></div>
</div></div>
_______________________________________________<br>ome-users mailing list<br><a href="mailto:ome-users@lists.openmicroscopy.org.uk">ome-users@lists.openmicroscopy.org.uk</a><br>http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users<br></blockquote></div><br></div></div></body></html>