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<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">Hi Will,<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">Thanks for the extensive answer.<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">Also, I wanted to congratulate you on the plugin. It gets a fantastic acceptance from our users. They love it!<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">Hopefully in a next version, choosing images can be simplified, as writing down the IDs works but is a bit cumbersome.<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">We will re-enable the saving option, as people were a little bit clueless where to find the actual figure. For them it
belongs to the context of the image, but as you explained there is nothing to be found, so a bit confusing.
<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">Another aspect is that if you have many figures, it becomes difficult to find back the figure you want. However, opening
the attachment from an image and then going straight to that figure seems much more logical in such a workflow.<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">P.s.: Should feature requests be made on github or on another OME server?<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">Kind Regards,<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">--<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">Christophe<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
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<p class="MsoNormal"><b><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif">From:</span></b><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif"> William Moore [mailto:will@lifesci.dundee.ac.uk]
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<b>Sent:</b> jeudi 9 octobre 2014 15:23<br>
<b>To:</b> Christophe TREFOIS; ome-users@lists.openmicroscopy.org.uk Users<br>
<b>Subject:</b> Re: [ome-users] OMERO.figure release 1.0.0<o:p></o:p></span></p>
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<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Hi,<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">Are you already making images "public" via the OMERO.web public user as described <a href="https://www.openmicroscopy.org/site/support/omero5/developers/Web/PublicData.html">https://www.openmicroscopy.org/site/support/omero5/developers/Web/PublicData.html</a> ?<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal"> In general I have tried to make the OMERO.figure files adopt the same permissions (same group) as the <o:p></o:p></p>
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<p class="MsoNormal">images that are used in each figure. So, by default the figure should start out with the same permissions as it's images.<o:p></o:p></p>
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<p class="MsoNormal">(It's actually possible to combine images from different groups into a single figure, but I'm assuming most users don't do this).<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">However, we don't currently attach the figure to any of the images that are in the figure.<o:p></o:p></p>
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<p class="MsoNormal">So, if you choose to move those images to a "public" group, the figure file will remain in it's original group.<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">If you want to also move the figure file to the "public" group, the only way to do this is to attach it to<o:p></o:p></p>
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<p class="MsoNormal">one of the images that are in the figure, then move that image to the public group.<o:p></o:p></p>
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<p class="MsoNormal">You can attach the figure by clicking the Attachments [+] button in the image right panel, then browsing existing files<o:p></o:p></p>
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<p class="MsoNormal">on OMERO and picking the figure by name.<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">This should cause the figure file to move to that group too.<o:p></o:p></p>
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<p class="MsoNormal">Then, you should only need to allow the public user to access "figure" urls (by configuring the public url filter - see docs link above)<o:p></o:p></p>
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<p class="MsoNormal">and it should just work.<o:p></o:p></p>
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<p class="MsoNormal">I haven't actually tested this complete workflow, but it should be fine.<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">NB: Just before the OMERO.figure 1.0.0 release, I added code that attached the figure file to all the<o:p></o:p></p>
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<p class="MsoNormal">images in the figure each time you Saved the figure. However, I disabled this for the release, since<o:p></o:p></p>
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<p class="MsoNormal">it made it too easy to accidentally delete the figure file when looking at the image in web-client.<o:p></o:p></p>
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<p class="MsoNormal">See <a href="https://github.com/will-moore/figure/issues/21#issuecomment-57457959">https://github.com/will-moore/figure/issues/21#issuecomment-57457959</a><o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">If you want to enable this, you can simply set LINK_TO_IMAGES = True in figure/views.py<o:p></o:p></p>
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<p class="MsoNormal"><a href="https://github.com/will-moore/figure/blob/develop/views.py#L244">https://github.com/will-moore/figure/blob/develop/views.py#L244</a><o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">In future versions of web-client, we'll make it harder to delete figure files, then we can re-enable this linking on save.<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">Hope that helps,<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal"> Will.<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">On 8 Oct 2014, at 17:11, Christophe TREFOIS <<a href="mailto:christophe.trefois@uni.lu">christophe.trefois@uni.lu</a>> wrote:<o:p></o:p></p>
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<o:p></o:p></p>
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<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D">Also, sorry to bug you more, but how would you change permissions on a « figure » object?</span><o:p></o:p></p>
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<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D"> </span><o:p></o:p></p>
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<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D">Eg, say I have the following workflow</span><o:p></o:p></p>
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<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D"> </span><o:p></o:p></p>
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<p class="MsoNormal" style="text-indent:-18.0pt"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D">1.</span><span lang="EN-US" style="font-size:7.0pt;color:#1F497D"> <span class="apple-converted-space"> </span></span><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D">Create
figure with user: toto</span><o:p></o:p></p>
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<p class="MsoNormal" style="text-indent:-18.0pt"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D">2.</span><span lang="EN-US" style="font-size:7.0pt;color:#1F497D"> <span class="apple-converted-space"> </span></span><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D">Finish
figure that goes to publication</span><o:p></o:p></p>
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<p class="MsoNormal" style="text-indent:-18.0pt"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D">3.</span><span lang="EN-US" style="font-size:7.0pt;color:#1F497D"> <span class="apple-converted-space"> </span></span><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D">Want
to make figure public to everyone can “interact” with it</span><o:p></o:p></p>
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<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D"> </span><o:p></o:p></p>
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<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D">I couldn’t find that in your documentation, maybe I’m blind<span class="apple-converted-space"> </span></span><span lang="EN-US" style="font-size:11.0pt;font-family:Wingdings;color:#1F497D">L</span><o:p></o:p></p>
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<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D"> </span><o:p></o:p></p>
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<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D">Cheers and kudos for this awesome toolü</span><o:p></o:p></p>
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<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D"> </span><o:p></o:p></p>
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<p class="MsoNormal"><b><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif">From:</span></b><span class="apple-converted-space"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif"> </span></span><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif">Christophe
TREFOIS<span class="apple-converted-space"> </span><br>
<b>Sent:</b><span class="apple-converted-space"> </span>mercredi 8 octobre 2014 17:59<br>
<b>To:</b><span class="apple-converted-space"> </span>'William Moore'<br>
<b>Subject:</b><span class="apple-converted-space"> </span>RE: [ome-users] OMERO.figure release 1.0.0</span><o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D">Sweet !</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D"> </span><o:p></o:p></p>
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<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D">Do you know of any efforts to have the whole OMERO in this beautiful typset ?</span><o:p></o:p></p>
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<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D"> </span><o:p></o:p></p>
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<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D">Also, I opened some issues on git for figure1.0.0, I hope that’s the place you expect feedback.</span><o:p></o:p></p>
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<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D"> </span><o:p></o:p></p>
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<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D">Best!</span><o:p></o:p></p>
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<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D"> </span><o:p></o:p></p>
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<p class="MsoNormal"><b><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif">From:</span></b><span class="apple-converted-space"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif"> </span></span><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif">William
Moore [<a href="mailto:will@lifesci.dundee.ac.uk"><span style="color:purple">mailto:will@lifesci.dundee.ac.uk</span></a>]<span class="apple-converted-space"> </span><br>
<b>Sent:</b><span class="apple-converted-space"> </span>mercredi 8 octobre 2014 15:49<br>
<b>To:</b><span class="apple-converted-space"> </span>Christophe TREFOIS<br>
<b>Subject:</b><span class="apple-converted-space"> </span>Re: [ome-users] OMERO.figure release 1.0.0</span><o:p></o:p></p>
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<p class="MsoNormal"><span lang="EN-US"> </span><o:p></o:p></p>
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<p class="MsoNormal">Hi,<o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal"> Yes, exactly. Twitter bootstrap makes everything easy!<o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal">Also using Raphael.js for rectangles on selected panels and backbone.js for everything else.<o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal"> Cheers,<o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal"> Will.<o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal">On 8 Oct 2014, at 14:45, Christophe TREFOIS <<a href="mailto:christophe.trefois@uni.lu"><span style="color:purple">christophe.trefois@uni.lu</span></a>> wrote:<o:p></o:p></p>
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<p class="MsoNormal" style="margin-bottom:12.0pt"> <o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D">Hi Will,</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D"> </span><o:p></o:p></p>
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<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D">Sorry I will just bluntly ask like this, but how do you get your OMERO to look so pretty ? (I’m guessing Twitter Bootstrap 3?)</span><o:p></o:p></p>
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<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D"> </span><o:p></o:p></p>
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<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D">Any pointers would be so welcome<span class="apple-converted-space"> </span></span><span lang="EN-US" style="font-size:11.0pt;font-family:Wingdings;color:#1F497D">J</span><o:p></o:p></p>
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<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D"> </span><o:p></o:p></p>
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<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D">Best,</span><o:p></o:p></p>
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<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D"> </span><o:p></o:p></p>
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<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D">P.s.: Installing OMERO.figure now…</span><o:p></o:p></p>
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<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D"> </span><o:p></o:p></p>
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<p class="MsoNormal"><b><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif">From:</span></b><span class="apple-converted-space"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif"> </span></span><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif">ome-users
[mailto:ome-<a href="mailto:users-bounces@lists.openmicroscopy.org.uk"><span style="color:purple">users-bounces@lists.openmicroscopy.org.uk</span></a>]<span class="apple-converted-space"> </span><b>On Behalf Of<span class="apple-converted-space"> </span></b>William
Moore<br>
<b>Sent:</b><span class="apple-converted-space"> </span>lundi 6 octobre 2014 16:58<br>
<b>To:</b><span class="apple-converted-space"> </span><a href="mailto:ome-users@lists.openmicroscopy.org.uk"><span style="color:purple">ome-users@lists.openmicroscopy.org.uk</span></a><span class="apple-converted-space"> </span>Users<br>
<b>Subject:</b><span class="apple-converted-space"> </span>[ome-users] OMERO.figure release 1.0.0</span><o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal">Hi All,<o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal"> Today we have released OMERO.figure 1.0.0, which includes support for Z-projections.<o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal">To see the full release announcement, go to <a href="http://will-moore.github.io/figure/2014/10/06/release-1.0.0.html"><span style="color:purple">http://will-moore.github.io/figure/2014/10/06/release-1.0.0.html</span></a><o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal">A video of the new features is at <a href="https://www.youtube.com/watch?v=P0MMKtIKdFY"><span style="color:purple">https://www.youtube.com/watch?v=P0MMKtIKdFY</span></a><o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal">And there are more tutorial videos at <a href="http://will-moore.github.io/figure/videos.html"><span style="color:purple">http://will-moore.github.io/figure/videos.html</span></a><o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal">If you haven't tried OMERO.figure yet, you can read more and experiment with the demos listed on the<o:p></o:p></p>
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<p class="MsoNormal">recently updated home page: <a href="http://will-moore.github.io/figure/"><span style="color:purple">http://will-moore.github.io/figure/</span></a><o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal"> Regards,<o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal"> Will.<o:p></o:p></p>
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