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<title>ome-users Digest, Vol 114, Issue 37</title>
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-----Original Message-----<br>
<b>From: </b>ome-users-request@lists.openmicroscopy.org.uk [<a href="mailto:ome-users-request@lists.openmicroscopy.org.uk">ome-users-request@lists.openmicroscopy.org.uk</a>]<br>
<b>Sent: </b>Tuesday, September 30, 2014 03:32 PM W. Europe Standard Time<br>
<b>To: </b>ome-users@lists.openmicroscopy.org.uk<br>
<b>Subject: </b>ome-users Digest, Vol 114, Issue 37<br>
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Today's Topics:<br>
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1. Re: OMERO.web installation under Ubuntu 14 (Simon Li)<br>
2. Re: Problem with 5.0.5 (Simon Li)<br>
<br>
<br>
----------------------------------------------------------------------<br>
<br>
Message: 1<br>
Date: Tue, 30 Sep 2014 13:26:10 +0000<br>
From: Simon Li <s.p.li@dundee.ac.uk><br>
To: "unai_lorenzo@ehu.es" <unai_lorenzo@ehu.es><br>
Cc: "ome-users@lists.openmicroscopy.org.uk"<br>
<ome-users@lists.openmicroscopy.org.uk><br>
Subject: Re: [ome-users] OMERO.web installation under Ubuntu 14<br>
Message-ID: <D0506CF7.68EE%spli@dundee.ac.uk><br>
Content-Type: text/plain; charset="utf-8"<br>
<br>
Hi Unai<br>
<br>
Could you try unsetting all of your omero.web.* configuration options,<br>
regenerate your nginx or apache configuration files, restart OMERO and<br>
OMERO.web, and seeing if that works?<br>
<br>
Thanks<br>
<br>
Simon<br>
<br>
On 30/09/2014 08:34, "unai_lorenzo@ehu.es" <unai_lorenzo@ehu.es> wrote:<br>
<br>
>Dear Simon,<br>
><br>
>I'm using nginx/apache.<br>
>I've also tried to access OMERO.web on the ports you suggested but it<br>
>didn't work either.<br>
>This is the output of `bin/omero config get':<br>
><br>
>omero.data.dir=/home/jribecarios/OMERO<br>
>omero.db.name=omero_database<br>
>omero.db.pass=db_password<br>
>omero.db.user=db_user<br>
>omero.web.application_server=fastcgi<br>
>omero.web.application_server.host=localhost<br>
>omero.web.application_server.port=4080<br>
>omero.web.force_script_name=/omero<br>
>omero.web.static_url=/omero/static/<br>
>jribecarios@jribecarios:~/omero/OMERO.server-5.0.4-ice35-b43$<br>
><br>
><br>
>I hope it helps.<br>
><br>
>Many thanks,<br>
>Unai<br>
><br>
><br>
>Simon Li <s.p.li@dundee.ac.uk> escribi?:<br>
><br>
>> Hi Unai<br>
>><br>
>> Are you using the development web server, or nginx/apache? If it?s the<br>
>> latter then OMERO.web should be accessible on either port 80 or 8080<br>
>> depending on your configuration, port 4080 is used for internal<br>
>> communication.<br>
>><br>
>> If this doesn?t solve your problem could you paste the output of<br>
>> `bin/omero config get`?<br>
>><br>
>> Thanks<br>
>><br>
>> Simon<br>
>><br>
>> On 29/09/2014 16:58, "unai_lorenzo@ehu.es" <unai_lorenzo@ehu.es> wrote:<br>
>><br>
>>> Dear OME users,<br>
>>><br>
>>> I am trying to install OMERO.web under Ubuntu 14. I've been following<br>
>>> all the instructions included in the web page, and everything seems to<br>
>>> be OK: I could start the server, and the OMERO.web client.<br>
>>><br>
>>> $ bin/omero web start<br>
>>><br>
>>> 0 static files copied, 816 unmodified.<br>
>>> Starting OMERO.web... [OK]<br>
>>><br>
>>><br>
>>> But I can't access OMERO.webadmin on the following address<br>
>>> <a href="http://localhost:4080">http://localhost:4080</a>.<br>
>>><br>
>>> Any guess about what's wrong? Could it be the something related to the<br>
>>> the firewall and the TCP ports?<br>
>>><br>
>>><br>
>>> Here you will find the diagnostics:<br>
>>><br>
>>><br>
>>>========================================================================<br>
>>>==<br>
>>> ======<br>
>>> OMERO Diagnostics 5.0.4-ice35-b43<br>
>>><br>
>>>========================================================================<br>
>>>==<br>
>>> ======<br>
>>><br>
>>> WARNING:omero.util.UpgradeCheck:UPGRADE AVAILABLE:Please upgrade to<br>
>>> 5.0.5 See <a href="http://trac.openmicroscopy.org.uk/omero">http://trac.openmicroscopy.org.uk/omero</a> for the latest<br>
>>>version<br>
>>><br>
>>> Commands: java -version 1.7.0 (/usr/bin/java)<br>
>>> Commands: python -V 2.7.6 (/usr/bin/python)<br>
>>> Commands: icegridnode --version 3.5.1<br>
>>> (/usr/bin/icegridnode)<br>
>>> Commands: icegridadmin --version 3.5.1<br>
>>> (/usr/bin/icegridadmin)<br>
>>> Commands: psql --version 9.3.5 (/usr/bin/psql)<br>
>>><br>
>>> Server: icegridnode running<br>
>>> Server: Blitz-0 active (pid = 4371, enabled)<br>
>>> Server: DropBox active (pid = 4403, enabled)<br>
>>> Server: FileServer active (pid = 4404, enabled)<br>
>>> Server: Indexer-0 active (pid = 4383, enabled)<br>
>>> Server: MonitorServer active (pid = 4387, enabled)<br>
>>> Server: OMERO.Glacier2 active (pid = 4394, enabled)<br>
>>> Server: OMERO.IceStorm active (pid = 4420, enabled)<br>
>>> Server: PixelData-0 active (pid = 4410, enabled)<br>
>>> Server: Processor-0 active (pid = 4416, enabled)<br>
>>> Server: Tables-0 active (pid = 4412, enabled)<br>
>>> Server: TestDropBox inactive (enabled)<br>
>>><br>
>>> OMERO: SSL port 4064<br>
>>> OMERO: TCP port 4063<br>
>>><br>
>>> Log dir:<br>
>>> /home/jribecarios/omero/OMERO.server-5.0.4-ice35-b43/var/log exists<br>
>>><br>
>>> Log files: Blitz-0.log 672.0 KB errors=12<br>
>>> warnings=6<br>
>>> Log files: DropBox.log 3.0 KB errors=0<br>
>>> warnings=1<br>
>>> Log files: FileServer.log 0.0 KB<br>
>>> Log files: Indexer-0.log 21.0 KB errors=13<br>
>>> warnings=0<br>
>>> Log files: MonitorServer.log 2.0 KB<br>
>>> Log files: OMEROweb.log 0.0 KB<br>
>>> Log files: OMEROweb_request.log 0.0 KB<br>
>>> Log files: PixelData-0.log 25.0 KB errors=18<br>
>>> warnings=1<br>
>>> Log files: Processor-0.log 2.0 KB errors=0<br>
>>> warnings=1<br>
>>> Log files: Tables-0.log 2.0 KB<br>
>>> Log files: TestDropBox.log n/a<br>
>>> Log files: master.err 2.0 KB errors=0<br>
>>> warnings=4<br>
>>> Log files: master.out 0.0 KB<br>
>>> Log files: Total size 0.73 MB<br>
>>><br>
>>><br>
>>> Environment:OMERO_HOME=(unset)<br>
>>> Environment:OMERO_NODE=(unset)<br>
>>> Environment:OMERO_MASTER=(unset)<br>
>>> Environment:OMERO_TEMPDIR=(unset)<br>
>>><br>
>>>Environment:PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin<br>
>>>:/<br>
>>> bin:/usr/games:/usr/local/games<br>
>>> Environment:PYTHONPATH=(unset)<br>
>>> Environment:ICE_HOME=(unset)<br>
>>> Environment:LD_LIBRARY_PATH=(unset)<br>
>>> Environment:DYLD_LIBRARY_PATH=(unset)<br>
>>><br>
>>> OMERO data dir: '/home/jribecarios/OMERO'Exists? TrueIs writable? True<br>
>>> OMERO temp dir: '/home/jribecarios/omero/tmp'Exists? TrueIs<br>
>>> writable? True (Size: 0)<br>
>>> OMERO.web status... [RUNNING] (PID 11366)<br>
>>><br>
>>><br>
>>> Many thanks in advance!!<br>
>>><br>
>>> Best regards,<br>
>>> Unai<br>
>>><br>
>>> _______________________________________________<br>
>>> ome-users mailing list<br>
>>> ome-users@lists.openmicroscopy.org.uk<br>
>>> <a href="http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users">http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users</a><br>
>><br>
>><br>
>> The University of Dundee is a registered Scottish Charity, No: SC015096<br>
><br>
><br>
><br>
<br>
<br>
The University of Dundee is a registered Scottish Charity, No: SC015096<br>
<br>
------------------------------<br>
<br>
Message: 2<br>
Date: Tue, 30 Sep 2014 13:30:53 +0000<br>
From: Simon Li <s.p.li@dundee.ac.uk><br>
To: Christophe TREFOIS <christophe.trefois@uni.lu>,<br>
"ome-users@lists.openmicroscopy.org.uk"<br>
<ome-users@lists.openmicroscopy.org.uk><br>
Subject: Re: [ome-users] Problem with 5.0.5<br>
Message-ID: <D0506E63.68FB%spli@dundee.ac.uk><br>
Content-Type: text/plain; charset="iso-8859-1"<br>
<br>
Hi Christophe<br>
<br>
You're right, it's a bug which crept in recently:<br>
<a href="http://trac.openmicroscopy.org/ome/ticket/12509">http://trac.openmicroscopy.org/ome/ticket/12509</a><br>
<br>
I think removing the rule completely will also fix things. Sorry for the inconvenience.<br>
<br>
Simon<br>
<br>
On 29/09/2014 22:57, "Christophe TREFOIS" <christophe.trefois@uni.lu<<a href="mailto:christophe.trefois@uni.lu">mailto:christophe.trefois@uni.lu</a>>> wrote:<br>
<br>
Dear all,<br>
<br>
I updated to 5.0.5 and generated a new apache conf.d file and started it as usual.<br>
<br>
Now when I go to the root of the webclient, I get a redirect to /omero and then a 404 error.<br>
<br>
[cid:image001.png@01CFDC40.397CC690]<br>
<br>
Which makes me wonder, why is the rewrite rule RewriteRule ^/?$ /omero/ [R] and not RewriteRule ^/?$ /webclient/ [R] ?<br>
<br>
Thanks for any help,<br>
<br>
By changing the rule to the latter, it works again...<br>
<br>
Best,<br>
<br>
<br>
................................................................................<br>
<br>
Dr. Christophe TREFOIS, Dipl.-Ing.<br>
Doctor in Biology<br>
Senior Technical Specialist<br>
<br>
UNIVERSIT? DU LUXEMBOURG<br>
<br>
<br>
<br>
LUXEMBOURG CENTRE FOR SYSTEMS BIOMEDICINE<br>
<br>
Campus Belval | House of Biomedicine<br>
<br>
7, avenue des Hauts-Fourneaux<br>
<br>
L-4362 Esch-sur-Alzette<br>
<br>
T +352 46 66 44 6124<br>
F +352 46 66 44 6949<br>
www.uni.lu/lcsb<<a href="http://www.uni.lu/lcsb">http://www.uni.lu/lcsb</a>><br>
<br>
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The University of Dundee is a registered Scottish Charity, No: SC015096<br>
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