<html><head><meta http-equiv="Content-Type" content="text/html charset=windows-1252"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div apple-content-edited="true"><div><div>Hi Sebastian,</div><div><br></div><div>thank you for the e-mail. We're currently working on the fix. I have opened a PR for it at <a href="https://github.com/openmicroscopy/bioformats/pull/1299">https://github.com/openmicroscopy/bioformats/pull/1299</a></div><div><br></div><div>Kind Regards,</div><div>Emil Rozbicki</div></div>
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<br><div><div>On 29 Aug 2014, at 08:00, Sebastian Rhode <<a href="mailto:sebrhode@gmail.com">sebrhode@gmail.com</a>> wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><div dir="ltr">This is the original bug decription on Fiji´s bugzilla, but somehow the HTML attachment got scrubbed, when Flaviu was sending this to the OME list.<br><br>See: <a href="http://lists.openmicroscopy.org.uk/pipermail/ome-users/2014-August/004653.html">http://lists.openmicroscopy.org.uk/pipermail/ome-users/2014-August/004653.html</a><br>
<br>So I try it again.<br clear="all"><div><br></div><div>Sebi<br></div><div><pre class="" id="comment_text_0">Hi,
it seems that Fiji (Bio-formats) can’t read our czi File and right now we have no idea why.<br>We get the follow error message:<br><br>(Fiji Is Just) ImageJ 2.0.0-rc-13/1.49e; Java 1.6.0_24 [64-bit]; Windows 7 6.1; 28MB of 6065MB (<1%)
java.lang.NumberFormatException: empty String
at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:992)
at java.lang.Double.valueOf(Double.java:475)
at java.lang.Double.<init>(Double.java:567)
at loci.formats.in.ZeissCZIReader.translateInformation(ZeissCZIReader.java:1450)
at loci.formats.in.ZeissCZIReader.translateMetadata(ZeissCZIReader.java:1215)
at loci.formats.in.ZeissCZIReader.initFile(ZeissCZIReader.java:699)
at loci.formats.FormatReader.setId(FormatReader.java:1317)
at loci.plugins.in.ImportProcess.initializeFile(ImportProcess.java:494)
at loci.plugins.in.ImportProcess.execute(ImportProcess.java:144)
at loci.plugins.in.Importer.showDialogs(Importer.java:141)
at loci.plugins.in.Importer.run(Importer.java:79)
at loci.plugins.LociImporter.run(LociImporter.java:81)
at ij.IJ.runUserPlugIn(IJ.java:202)
at ij.IJ.runPlugIn(IJ.java:166)
at ij.Executer.runCommand(Executer.java:131)
at ij.Executer.run(Executer.java:64)
at ij.IJ.run(IJ.java:272)
at ij.IJ.run(IJ.java:250)
at ij.macro.Functions.doRun(Functions.java:593)
at ij.macro.Functions.doFunction(Functions.java:89)
at ij.macro.Interpreter.doStatement(Interpreter.java:227)
at ij.macro.Interpreter.doStatements(Interpreter.java:215)
at ij.macro.Interpreter.run(Interpreter.java:112)
at ij.macro.Interpreter.run(Interpreter.java:82)
at ij.macro.MacroRunner.run(MacroRunner.java:139)
at java.lang.Thread.run(Thread.java:662)
Link to the Image: <a href="https://www.dropbox.com/s/erjeucsabgzm1i2/EB3_H2B_z%20over%20time.czi">https://www.dropbox.com/s/erjeucsabgzm1i2/EB3_H2B_z%20over%20time.czi</a>
However, this one seems to work fine:
Link to the Image: <a href="https://www.dropbox.com/s/wav004q9dvvagef/3CH_Z-Stack.czi">https://www.dropbox.com/s/wav004q9dvvagef/3CH_Z-Stack.czi</a>
So the question would be what is the difference between the two Images that is causing the problem?
Kind regards,
Flaviu</pre><br>
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