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<div>Hi Oliver,</div>
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<div>There seems to be a signature error,</div>
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<div>Here’s a small Macro that works for me,</div>
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<p style="margin: 0px; font-size: 16px; font-family: 'Lucida Grande';">run("Bio-Formats Macro Extensions");</p>
<p style="margin: 0px; font-size: 16px; font-family: 'Lucida Grande';">id = File.openDialog("Choose a file");</p>
<p style="margin: 0px; font-size: 16px; font-family: 'Lucida Grande';">Ext.setId(id);</p>
<p style="margin: 0px; font-size: 16px; font-family: 'Lucida Grande';">Ext.getImageCount(imageCount);</p>
<p style="margin: 0px; font-size: 16px; font-family: 'Lucida Grande';">for (image=0; image<imageCount; image++) {</p>
<p style="margin: 0px; font-size: 16px; font-family: 'Lucida Grande';">Ext.openImage("", image);</p>
<p style="margin: 0px; font-size: 16px; font-family: 'Lucida Grande';">}</p>
<p style="margin: 0px; font-size: 16px; font-family: 'Lucida Grande';">Ext.close();</p>
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<div>For more details on the macro-extensions,</div>
<div><a href="https://www.openmicroscopy.org/site/support/bio-formats5/users/imagej/#macros-and-plugins">https://www.openmicroscopy.org/site/support/bio-formats5/users/imagej/#macros-and-plugins</a></div>
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<div>And I got the above suggestion from an earlier forum post,</div>
<div><a href="http://www.openmicroscopy.org/community/viewtopic.php?f=13&t=2400">http://www.openmicroscopy.org/community/viewtopic.php?f=13&t=2400</a></div>
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<div>Hope this helps.</div>
<div><br>
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<div>Best,</div>
<div>Balaji</div>
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<div><br>
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<div style="color: rgb(40, 40, 40);"><span style="background-color: rgb(255, 255, 255);">__________________</span></div>
<div style="color: rgb(40, 40, 40);">
<p style="margin-top: 0px; margin-bottom: 0px;">Mr Balaji Ramalingam</p>
<p style="margin-top: 0px; margin-bottom: 0px;">Software Developer<br>
</p>
<p style="margin-top: 0px; margin-bottom: 0px;">OME Team</p>
<p style="margin-top: 0px; margin-bottom: 0px;">College of Life Sciences</p>
<p style="margin-top: 0px; margin-bottom: 0px;">University of Dundee</p>
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<span style="font-weight:bold">From: </span>Burri Olivier <<a href="mailto:olivier.burri@epfl.ch">olivier.burri@epfl.ch</a>><br>
<span style="font-weight:bold">Date: </span>Tuesday, 29 July 2014 14:31<br>
<span style="font-weight:bold">To: </span>"<a href="mailto:ome-users@lists.openmicroscopy.org.uk">ome-users@lists.openmicroscopy.org.uk</a>" <<a href="mailto:ome-users@lists.openmicroscopy.org.uk">ome-users@lists.openmicroscopy.org.uk</a>><br>
<span style="font-weight:bold">Subject: </span>[ome-users] BioFormats Macro Extensions Problem with Ext.openImage(title, no)<br>
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<p class="MsoNormal">Hi, <o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><span lang="EN-US">When running the BioFormats Macro extensions,
<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US">After initializing the image and setting the series<o:p></o:p></span></p>
<p class="MsoNormal"><b><span lang="EN-US">Ext.setId(id);<o:p></o:p></span></b></p>
<p class="MsoNormal"><b><span lang="EN-US">Ext.setSeries(seriesNum);<o:p></o:p></span></b></p>
<p class="MsoNormal"><span lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US">If I run something like<o:p></o:p></span></p>
<p class="MsoNormal"><b><span lang="EN-US">Ext.openImage(“My Image”, 0);<o:p></o:p></span></b></p>
<p class="MsoNormal"><span lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US">I get the following error dialog:<o:p></o:p></span></p>
<p class="MsoNormal"><b><span style="mso-fareast-language:FR-CH">« Macro Error »<o:p></o:p></span></b></p>
<p class="MsoNormal"><b><span lang="EN-US" style="mso-fareast-language:FR-CH">Function name expected : in line ##.<o:p></o:p></span></b></p>
<p class="MsoNormal"><b><span lang="EN-US" style="mso-fareast-language:FR-CH">Ext.<openImage>(“My Image”, 0);<o:p></o:p></span></b></p>
<p class="MsoNormal"><span lang="EN-US" style="mso-fareast-language:FR-CH"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="mso-fareast-language:FR-CH">If I replace the call to
<b>Ext.openImage</b> with <b>Ext.openSubImage<o:p></o:p></b></span></p>
<p class="MsoNormal"><span lang="EN-US" style="mso-fareast-language:FR-CH"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="mso-fareast-language:FR-CH">And make sure to get the X and Y sizes of the image before,
<b>this works just fine</b>.<o:p></o:p></span></p>
<p class="MsoNormal"><b><span lang="EN-US" style="mso-fareast-language:FR-CH"><o:p> </o:p></span></b></p>
<p class="MsoNormal"><b><span lang="EN-US" style="mso-fareast-language:FR-CH">Ext.openSubImage</span></b><b><span lang="EN-US">(“My Image”, 0,0,0,sizeX,sizeY);</span></b><span lang="EN-US" style="mso-fareast-language:FR-CH"><o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="mso-fareast-language:FR-CH"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="mso-fareast-language:FR-CH">Any thoughts?<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="mso-fareast-language:FR-CH"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="mso-fareast-language:FR-CH">Thank you and best regards<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US"><o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US">Oli<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="color:#7F7F7F;mso-fareast-language:FR-CH">Olivier Burri<o:p></o:p></span></p>
<p class="MsoNormal"><b><span lang="EN-US" style="color:#404040;mso-fareast-language:FR-CH">Engineer - Image Processing
<o:p></o:p></span></b></p>
<p class="MsoNormal"><b><span lang="EN-US" style="color:#404040;mso-fareast-language:FR-CH">& Software Development<o:p></o:p></span></b></p>
<p class="MsoNormal"><b><span style="color:#A6A6A6;mso-fareast-language:FR-CH">EPFL - SV - PTECH - BIOP<o:p></o:p></span></b></p>
<p class="MsoNormal"><o:p> </o:p></p>
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