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<p class="MsoNormal">Hi,<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">I’m seeing a strange error when trying to build openmicroscopy from source on Windows:<o:p></o:p></p>
<p class="MsoNormal" style="margin-left:36.0pt"><span style="font-size:8.0pt;font-family:"Courier New""><o:p> </o:p></span></p>
<p class="MsoNormal" style="margin-left:36.0pt"><span style="font-size:8.0pt;font-family:"Courier New""> ::::::::::::::::::::::::::::::::::::::::::::::<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:36.0pt"><span style="font-size:8.0pt;font-family:"Courier New""><o:p> </o:p></span></p>
<p class="MsoNormal" style="margin-left:36.0pt"><span style="font-size:8.0pt;font-family:"Courier New""> :: UNRESOLVED DEPENDENCIES ::<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:36.0pt"><span style="font-size:8.0pt;font-family:"Courier New""><o:p> </o:p></span></p>
<p class="MsoNormal" style="margin-left:36.0pt"><span style="font-size:8.0pt;font-family:"Courier New""> ::::::::::::::::::::::::::::::::::::::::::::::<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:36.0pt"><span style="font-size:8.0pt;font-family:"Courier New""><o:p> </o:p></span></p>
<p class="MsoNormal" style="margin-left:36.0pt"><span style="font-size:8.0pt;font-family:"Courier New""> :: ome#bio-formats;UNKNOWN: not found<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:36.0pt"><span style="font-size:8.0pt;font-family:"Courier New""><o:p> </o:p></span></p>
<p class="MsoNormal" style="margin-left:36.0pt"><span style="font-size:8.0pt;font-family:"Courier New""> ::::::::::::::::::::::::::::::::::::::::::::::<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:36.0pt"><span style="font-size:8.0pt;font-family:"Courier New""><o:p> </o:p></span></p>
<p class="MsoNormal" style="margin-left:36.0pt"><span style="font-size:8.0pt;font-family:"Courier New""><o:p> </o:p></span></p>
<p class="MsoNormal" style="margin-left:36.0pt"><span style="font-size:8.0pt;font-family:"Courier New""><o:p> </o:p></span></p>
<p class="MsoNormal" style="margin-left:36.0pt"><span style="font-size:8.0pt;font-family:"Courier New"">:: USE VERBOSE OR DEBUG MESSAGE LEVEL FOR MORE DETAILS<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:36.0pt"><span style="font-size:8.0pt;font-family:"Courier New""><o:p> </o:p></span></p>
<p class="MsoNormal" style="margin-left:36.0pt"><span style="font-size:8.0pt;font-family:"Courier New"">BUILD FAILED<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:36.0pt"><span style="font-size:8.0pt;font-family:"Courier New"">D:\GitHub\openmicroscopy_v5.0\build.xml:265: The following error occurred while<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:36.0pt"><span style="font-size:8.0pt;font-family:"Courier New"">executing this line:<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:36.0pt"><span style="font-size:8.0pt;font-family:"Courier New"">D:\GitHub\openmicroscopy_v5.0\components\antlib\resources\global.xml:434: The fo<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:36.0pt"><span style="font-size:8.0pt;font-family:"Courier New"">llowing error occurred while executing this line:<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:36.0pt"><span style="font-size:8.0pt;font-family:"Courier New"">D:\GitHub\openmicroscopy_v5.0\components\antlib\resources\lifecycle.xml:62: impo<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:36.0pt"><span style="font-size:8.0pt;font-family:"Courier New"">ssible to resolve dependencies:<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:36.0pt"><span style="font-size:8.0pt;font-family:"Courier New""> resolve failed - see output for details<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:36.0pt"><span style="font-size:8.0pt;font-family:"Courier New""><o:p> </o:p></span></p>
<p class="MsoNormal" style="margin-left:36.0pt"><span style="font-size:8.0pt;font-family:"Courier New"">Total time: 52 seconds<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:36.0pt"><span style="font-size:8.0pt;font-family:"Courier New""><o:p> </o:p></span></p>
<p class="MsoNormal" style="margin-left:36.0pt"><span style="font-size:8.0pt;font-family:"Courier New"">D:\GitHub\openmicroscopy_v5.0><o:p></o:p></span></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">I have “git cloned” this version of openmicroscopy from as follows:<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><span style="font-size:8.0pt;font-family:"Courier New""> git clone –branch dev_5_0
<a href="https://github.com/openmicroscopy/openmicroscopy.git">https://github.com/openmicroscopy/openmicroscopy.git</a> openmicroscopy<o:p></o:p></span></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Following the above, I have also run the following commands:<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><span style="font-size:8.0pt;font-family:"Courier New""> git submodule init<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:8.0pt;font-family:"Courier New""> git submodule update<o:p></o:p></span></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">I then run the following in the following to build openmicroscopy:<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal" style="margin-left:36.0pt"><span style="font-size:8.0pt;font-family:"Courier New"">set JAVA_HOME=C:\Program Files\Java\jdk1.7.0_51<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:36.0pt"><span style="font-size:8.0pt;font-family:"Courier New"">Set ICE_HOME=C:\Program Files (x86)\ZeroC\Ice-3.5.1<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:36.0pt"><span style="font-size:8.0pt;font-family:"Courier New"">Set OMERO_HOME=D:\GitHub\openmicroscopy_v5.0<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:36.0pt"><span style="font-size:8.0pt;font-family:"Courier New"">set PATH=C:\Program Files (x86)\ZeroC\Ice-3.5.1\bin\vc100\x64;C:\Program Files\Java\jdk1.7.0_51\bin;C:\Python27;%PATH%
<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:36.0pt"><span style="font-size:8.0pt;font-family:"Courier New"">set ARCH=x64<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:36.0pt"><span style="font-size:8.0pt;font-family:"Courier New"">set RELEASE=Os<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:36.0pt"><span style="font-size:8.0pt;font-family:"Courier New"">python build.py clean<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:36.0pt"><span style="font-size:8.0pt;font-family:"Courier New"">python build.py<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-left:36.0pt"><span style="font-size:8.0pt;font-family:"Courier New"">python build.py build-cpp<o:p></o:p></span></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">It is the python build.py which is resulting in the “ome#bio-formats;UNKNOWN: not found” error.
<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Please can someone point me in the direction of where I am going wrong?<o:p></o:p></p>
<p class="MsoNormal"><br>
Thanks<o:p></o:p></p>
<p class="MsoNormal">John<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal" style="line-height:12.0pt;background:white"><b><span style="font-size:10.0pt;font-family:"Arial","sans-serif";color:#4F81BD;mso-fareast-language:EN-GB">-------------------------------------------------------------------------------------------------------------------------------------------- </span></b><span style="color:#0F126F;mso-fareast-language:EN-GB"><o:p></o:p></span></p>
<p class="MsoNormal" style="line-height:12.0pt;background:white"><b><span style="font-family:"Arial","sans-serif";color:#548DD4;mso-fareast-language:EN-GB">John Webber<br>
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<p class="MsoNormal" style="line-height:12.0pt;background:white"><span style="color:#1F497D;mso-fareast-language:EN-GB">Norwich</span><span style="color:#0F126F;mso-fareast-language:EN-GB"><o:p></o:p></span></p>
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</span><span style="color:#1F497D;mso-fareast-language:EN-GB"><a href="mailto:john.webber@nbi.ac.uk"><span style="color:blue">john.webber@nbi.ac.uk</span></a></span><span style="color:#0F126F;mso-fareast-language:EN-GB"><o:p></o:p></span></p>
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<p class="MsoNormal" style="line-height:12.0pt;background:white"><span style="color:#1F497D;mso-fareast-language:EN-GB"> HPC Support (Tel):</span><span style="mso-fareast-language:EN-GB">
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