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<div>Hi John</div>
<div><br>
</div>
<div>What operating system and Java versions are you using? The mentions of gnu.gcj and libgcj suggest it might not be the standard JRE/JDK.</div>
<div><br>
</div>
<div>Simon</div>
<br>
<div>
<div>On 7 Apr 2014, at 15:12, "John Webber (NBI)" <<a href="mailto:John.Webber@nbi.ac.uk">John.Webber@nbi.ac.uk</a>></div>
<div> wrote:</div>
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<blockquote type="cite">
<div lang="EN-GB" link="#0563C1" vlink="#954F72" style="font-family: Helvetica; font-size: medium; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: -webkit-auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; ">
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Hi,<o:p></o:p></div>
<div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; ">
<o:p> </o:p></div>
<div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; ">
I’ve just installed a new machine with Omero 5 and Ice 3.5.1, but I’m having trouble starting Omero.<o:p></o:p></div>
<div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; ">
<o:p> </o:p></div>
<div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; ">
I am seeing the following errors in the “master.err” log file. Can anyone give me any pointers as to what I might be missing?<o:p></o:p></div>
<div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; ">
<o:p> </o:p></div>
<div style="margin: 0cm 0cm 0.0001pt 36pt; font-size: 11pt; font-family: Calibri, sans-serif; ">
<span style="font-size: 9pt; ">Exception in thread "main" java.lang.NoClassDefFoundError: ome.services.blitz.Entry<o:p></o:p></span></div>
<div style="margin: 0cm 0cm 0.0001pt 36pt; font-size: 11pt; font-family: Calibri, sans-serif; ">
<span style="font-size: 9pt; "> at java.lang.Class.initializeClass(libgcj.so.10)<o:p></o:p></span></div>
<div style="margin: 0cm 0cm 0.0001pt 36pt; font-size: 11pt; font-family: Calibri, sans-serif; ">
<span style="font-size: 9pt; ">Caused by: java.lang.ClassNotFoundException: sun.misc.SignalHandler not found in gnu.gcj.runtime.SystemClassLoader{urls=[file:lib/server/blitz.jar], parent=gnu.gcj.runtime.ExtensionClassLoader{urls=[], parent=null}}<o:p></o:p></span></div>
<div style="margin: 0cm 0cm 0.0001pt 36pt; font-size: 11pt; font-family: Calibri, sans-serif; ">
<span style="font-size: 9pt; "> at java.net.URLClassLoader.findClass(libgcj.so.10)<o:p></o:p></span></div>
<div style="margin: 0cm 0cm 0.0001pt 36pt; font-size: 11pt; font-family: Calibri, sans-serif; ">
<span style="font-size: 9pt; "> at java.lang.ClassLoader.loadClass(libgcj.so.10)<o:p></o:p></span></div>
<div style="margin: 0cm 0cm 0.0001pt 36pt; font-size: 11pt; font-family: Calibri, sans-serif; ">
<span style="font-size: 9pt; "> at java.lang.ClassLoader.loadClass(libgcj.so.10)<o:p></o:p></span></div>
<div style="margin: 0cm 0cm 0.0001pt 36pt; font-size: 11pt; font-family: Calibri, sans-serif; ">
<span style="font-size: 9pt; "> at java.lang.Class.initializeClass(libgcj.so.10)<o:p></o:p></span></div>
<div style="margin: 0cm 0cm 0.0001pt 36pt; font-size: 11pt; font-family: Calibri, sans-serif; ">
<span style="font-size: 9pt; ">Exception in thread "main" java.lang.NoClassDefFoundError: ome.services.blitz.Entry<o:p></o:p></span></div>
<div style="margin: 0cm 0cm 0.0001pt 36pt; font-size: 11pt; font-family: Calibri, sans-serif; ">
<span style="font-size: 9pt; "> at java.lang.Class.initializeClass(libgcj.so.10)<o:p></o:p></span></div>
<div style="margin: 0cm 0cm 0.0001pt 36pt; font-size: 11pt; font-family: Calibri, sans-serif; ">
<span style="font-size: 9pt; ">Caused by: java.lang.ClassNotFoundException: sun.misc.SignalHandler not found in gnu.gcj.runtime.SystemClassLoader{urls=[file:lib/server/blitz.jar], parent=gnu.gcj.runtime.ExtensionClassLoader{urls=[], parent=null}}<o:p></o:p></span></div>
<div style="margin: 0cm 0cm 0.0001pt 36pt; font-size: 11pt; font-family: Calibri, sans-serif; ">
<span style="font-size: 9pt; "> at java.net.URLClassLoader.findClass(libgcj.so.10)<o:p></o:p></span></div>
<div style="margin: 0cm 0cm 0.0001pt 36pt; font-size: 11pt; font-family: Calibri, sans-serif; ">
<span style="font-size: 9pt; "> at java.lang.ClassLoader.loadClass(libgcj.so.10)<o:p></o:p></span></div>
<div style="margin: 0cm 0cm 0.0001pt 36pt; font-size: 11pt; font-family: Calibri, sans-serif; ">
<span style="font-size: 9pt; "> at java.lang.ClassLoader.loadClass(libgcj.so.10)<o:p></o:p></span></div>
<div style="margin: 0cm 0cm 0.0001pt 36pt; font-size: 11pt; font-family: Calibri, sans-serif; ">
<span style="font-size: 9pt; "> at java.lang.Class.initializeClass(libgcj.so.10)<o:p></o:p></span></div>
<div style="margin: 0cm 0cm 0.0001pt 36pt; font-size: 11pt; font-family: Calibri, sans-serif; ">
<span style="font-size: 9pt; ">-! 04/07/14 15:01:14.032 OMERO.Glacier2: warning: unable to contact permissions verifier `BlitzVerifier@BlitzAdapters'<o:p></o:p></span></div>
<div style="margin: 0cm 0cm 0.0001pt 36pt; font-size: 11pt; font-family: Calibri, sans-serif; ">
<span style="font-size: 9pt; "> Reference.cpp:1663: Ice::NoEndpointException:<o:p></o:p></span></div>
<div style="margin: 0cm 0cm 0.0001pt 36pt; font-size: 11pt; font-family: Calibri, sans-serif; ">
<span style="font-size: 9pt; "> no suitable endpoint available for proxy `BlitzVerifier -t -e 1.1 @ BlitzAdapters'<o:p></o:p></span></div>
<div style="margin: 0cm 0cm 0.0001pt 36pt; font-size: 11pt; font-family: Calibri, sans-serif; ">
<span style="font-size: 9pt; ">-! 04/07/14 15:01:14.033 OMERO.Glacier2: warning: unable to contact session manager `BlitzManager@BlitzAdapters'<o:p></o:p></span></div>
<div style="margin: 0cm 0cm 0.0001pt 36pt; font-size: 11pt; font-family: Calibri, sans-serif; ">
<span style="font-size: 9pt; "> Reference.cpp:1663: Ice::NoEndpointException:<o:p></o:p></span></div>
<div style="margin: 0cm 0cm 0.0001pt 36pt; font-size: 11pt; font-family: Calibri, sans-serif; ">
<span style="font-size: 9pt; "> no suitable endpoint available for proxy `BlitzManager -t -e 1.1 @ BlitzAdapters'<o:p></o:p></span></div>
<div style="margin: 0cm 0cm 0.0001pt 36pt; font-size: 11pt; font-family: Calibri, sans-serif; ">
<span style="font-size: 9pt; ">Exception in thread "main" java.lang.NoClassDefFoundError: ome.services.blitz.Entry<o:p></o:p></span></div>
<div style="margin: 0cm 0cm 0.0001pt 36pt; font-size: 11pt; font-family: Calibri, sans-serif; ">
<span style="font-size: 9pt; "> at java.lang.Class.initializeClass(libgcj.so.10)<o:p></o:p></span></div>
<div style="margin: 0cm 0cm 0.0001pt 36pt; font-size: 11pt; font-family: Calibri, sans-serif; ">
<span style="font-size: 9pt; ">Caused by: java.lang.ClassNotFoundException: sun.misc.SignalHandler not found in gnu.gcj.runtime.SystemClassLoader{urls=[file:lib/server/blitz.jar], parent=gnu.gcj.runtime.ExtensionClassLoader{urls=[], parent=null}}<o:p></o:p></span></div>
<div style="margin: 0cm 0cm 0.0001pt 36pt; font-size: 11pt; font-family: Calibri, sans-serif; ">
<span style="font-size: 9pt; "> at java.net.URLClassLoader.findClass(libgcj.so.10)<o:p></o:p></span></div>
<div style="margin: 0cm 0cm 0.0001pt 36pt; font-size: 11pt; font-family: Calibri, sans-serif; ">
<span style="font-size: 9pt; "> at java.lang.ClassLoader.loadClass(libgcj.so.10)<o:p></o:p></span></div>
<div style="margin: 0cm 0cm 0.0001pt 36pt; font-size: 11pt; font-family: Calibri, sans-serif; ">
<span style="font-size: 9pt; "> at java.lang.ClassLoader.loadClass(libgcj.so.10)<o:p></o:p></span></div>
<div style="margin: 0cm 0cm 0.0001pt 36pt; font-size: 11pt; font-family: Calibri, sans-serif; ">
<span style="font-size: 9pt; "> at java.lang.Class.initializeClass(libgcj.so.10)<o:p></o:p></span></div>
<div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; ">
<o:p> </o:p></div>
<div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; ">
<br>
Thanks<o:p></o:p></div>
<div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; ">
John<o:p></o:p></div>
<div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; ">
<o:p> </o:p></div>
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<o:p> </o:p></div>
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<b><span style="font-size: 10pt; font-family: Arial, sans-serif; color: rgb(79, 129, 189); ">-------------------------------------------------------------------------------------------------------------------------------------------- </span></b><span style="color: rgb(15, 18, 111); "><o:p></o:p></span></div>
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<b><span style="font-family: Arial, sans-serif; color: rgb(84, 141, 212); ">John Webber<br>
</span></b><span style="color: rgb(31, 73, 125); ">Computing and Information Services</span><span style="color: rgb(15, 18, 111); "><o:p></o:p></span></div>
<div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; line-height: 12pt; background-color: white; ">
<span style="color: rgb(31, 73, 125); ">NBI Partnership Ltd</span><span style="color: rgb(15, 18, 111); "><o:p></o:p></span></div>
<div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; line-height: 12pt; background-color: white; ">
<span style="color: rgb(31, 73, 125); ">Norwich Research park</span><span style="color: rgb(15, 18, 111); "><o:p></o:p></span></div>
<div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; line-height: 12pt; background-color: white; ">
<span style="color: rgb(31, 73, 125); ">Colney Lane</span><span style="color: rgb(15, 18, 111); "><o:p></o:p></span></div>
<div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; line-height: 12pt; background-color: white; ">
<span style="color: rgb(31, 73, 125); ">Norwich</span><span style="color: rgb(15, 18, 111); "><o:p></o:p></span></div>
<div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; line-height: 12pt; background-color: white; ">
<span style="color: rgb(31, 73, 125); ">NR4 7UH</span><span style="color: rgb(15, 18, 111); "><o:p></o:p></span></div>
<div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; line-height: 12pt; background-color: white; ">
<span style="color: rgb(31, 73, 125); "> </span><span style="color: rgb(15, 18, 111); "><o:p></o:p></span></div>
<div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; line-height: 12pt; background-color: white; ">
<span style="color: rgb(31, 73, 125); ">E-Mail:</span><span> </span><span style="color: rgb(31, 73, 125); "><a href="mailto:john.webber@nbi.ac.uk" style="color: rgb(149, 79, 114); text-decoration: underline; "><span style="color: blue; ">john.webber@nbi.ac.uk</span></a></span><span style="color: rgb(15, 18, 111); "><o:p></o:p></span></div>
<div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; line-height: 12pt; background-color: white; ">
<span style="color: rgb(31, 73, 125); ">Web:</span><span> </span><span style="color: rgb(31, 73, 125); "> <span class="Apple-converted-space"> </span><a href="http://www.nbi.ac.uk/" style="color: rgb(149, 79, 114); text-decoration: underline; "><span style="color: blue; ">http://www.nbi.ac.uk</span></a></span><span style="color: rgb(15, 18, 111); "><o:p></o:p></span></div>
<div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; line-height: 12pt; background-color: white; ">
<span style="color: rgb(31, 73, 125); ">Tel:</span><span> </span><span style="color: rgb(31, 73, 125); "> +44(0)1603 450 818<o:p></o:p></span></div>
<div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; line-height: 12pt; background-color: white; ">
<span style="color: rgb(31, 73, 125); "> </span></div>
<div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; line-height: 12pt; background-color: white; ">
<span style="color: rgb(31, 73, 125); ">Helpdesk (Tel): 1234</span><span> </span><span style="color: rgb(31, 73, 125); "> HPC Support (Web):</span><span> </span><span style="color: rgb(31, 73, 125); "> <span class="Apple-converted-space"> </span><a href="http://hpc.nbi.ac.uk/" style="color: rgb(149, 79, 114); text-decoration: underline; "><span style="color: blue; ">http://hpc.nbi.ac.uk</span></a>
(NBI internal)<o:p></o:p></span></div>
<div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; line-height: 12pt; background-color: white; ">
<span style="color: rgb(31, 73, 125); "> HPC Support (Tel):</span><span> </span><span style="color: rgb(31, 73, 125); "> 2003 (NBI internal)<o:p></o:p></span></div>
<div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; ">
<span style="color: rgb(31, 73, 125); "> </span><span style="color: rgb(15, 18, 111); "><o:p></o:p></span></div>
<div style="margin: 0cm 0cm 0.0001pt; font-size: 11pt; font-family: Calibri, sans-serif; ">
<i><span style="color: rgb(31, 73, 125); ">The NBI Partnership Ltd provides non-scientific services to the Institute of Food Research, the John Innes Centre, The Genome Analysis Centre and The Sainsbury Laboratory</span></i><span style="color: rgb(15, 18, 111); "><o:p></o:p></span></div>
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<o:p> </o:p></div>
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