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<meta http-equiv="Content-Type" content="text/html; charset=Windows-1252"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; color: rgb(0, 0, 0); font-size: 14px; font-family: Calibri, sans-serif;"><div>Hi,</div><div><br></div><div>I have been trying out the version 5 bio-importer plugin for ImageJ with my .msr files from ImSpectorPro (LaVision Biotec) and have been having mixed success.</div><div><br></div><div>It is quite strange as of two files saved ~10 minutes apart, one will load and one will not, even though they are both two channel, z-stacks.</div><div><br></div><div>The exceptions window for the file which does not load is as follows:</div><div><br></div><div><div>java.lang.NegativeArraySizeException</div><div><span class="Apple-tab-span" style="white-space:pre"> </span>at ome.scifio.io.RandomAccessInputStream.readString(RandomAccessInputStream.java:403)</div><div><span class="Apple-tab-span" style="white-space:pre"> </span>at loci.common.RandomAccessInputStream.readString(RandomAccessInputStream.java:275)</div><div><span class="Apple-tab-span" style="white-space:pre"> </span>at loci.formats.in.ImspectorReader.initFile(ImspectorReader.java:166)</div><div><span class="Apple-tab-span" style="white-space:pre"> </span>at loci.formats.FormatReader.setId(FormatReader.java:1360)</div><div><span class="Apple-tab-span" style="white-space:pre"> </span>at loci.plugins.in.ImportProcess.initializeFile(ImportProcess.java:482)</div><div><span class="Apple-tab-span" style="white-space:pre"> </span>at loci.plugins.in.ImportProcess.execute(ImportProcess.java:146)</div><div><span class="Apple-tab-span" style="white-space:pre"> </span>at loci.plugins.in.Importer.showDialogs(Importer.java:141)</div><div><span class="Apple-tab-span" style="white-space:pre"> </span>at loci.plugins.in.Importer.run(Importer.java:79)</div><div><span class="Apple-tab-span" style="white-space:pre"> </span>at loci.plugins.LociImporter.run(LociImporter.java:81)</div><div><span class="Apple-tab-span" style="white-space:pre"> </span>at ij.IJ.runUserPlugIn(IJ.java:184)</div><div><span class="Apple-tab-span" style="white-space:pre"> </span>at ij.IJ.runPlugIn(IJ.java:151)</div><div><span class="Apple-tab-span" style="white-space:pre"> </span>at ij.Executer.runCommand(Executer.java:124)</div><div><span class="Apple-tab-span" style="white-space:pre"> </span>at ij.Executer.run(Executer.java:61)</div><div><span class="Apple-tab-span" style="white-space:pre"> </span>at java.lang.Thread.run(Thread.java:695)</div></div><div><br></div><div>I can upload them somewhere if that is possible or use my public folder on Dropbox. Also I can export the metadata for both files from ImspectorPro if that is of use as well.</div><div><br></div><div>Please let me know if I can help in any other way.</div><div><br></div><div>Cheers,</div><div><br></div><div>Ewan</div><div><br></div><div>—</div><div><br></div><div><div><div><div>-- </div><div><br></div></div><div>Dr Ewan McGhee</div><div><br></div><div>Senior Scientific Officer</div><div>Beatson Advanced Imaging Resource</div><div>Beatson Institute for Cancer Research</div><div>Glasgow</div><div><br></div><div>Tel: +44-(0)141-330-6872</div><div><br></div></div></div><div><br></div><div><br></div></body></html>