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<p class="MsoNormal"><span lang="EN-US">Dear all,<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US">Why does it seem when importing a Metamorph .nd stack, that only 2 pixels by 2 pixels are being read in ?<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US">A TileHeight of 2 seems to be extremely inefficient.<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US">If anybody knows what could be going on here that would be great.<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US">Just as an info, but a .nd linking to ~70 MB of images, is taking more than 40 mins to still not finish importing…<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US">Thank you,<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:8.0pt;font-family:"Lucida Console"">2014-02-04 05:10:50,663 DEBUG [ o.s.blitz.repo.ManagedImportRequestI] (3-thread-1) Plane:0 X:0 Y:0 TileWidth:1392 TileHeight:2 arrayBuf.length:5568<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:8.0pt;font-family:"Lucida Console"">2014-02-04 05:10:50,666 INFO [ loci.formats.in.MinimalTiffReader] (3-thread-1) Reading IFDs<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:8.0pt;font-family:"Lucida Console"">2014-02-04 05:10:50,679 INFO [ loci.formats.in.MinimalTiffReader] (3-thread-1) Populating metadata<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:8.0pt;font-family:"Lucida Console"">2014-02-04 05:10:51,017 INFO [ loci.formats.in.BaseTiffReader] (3-thread-1) Populating OME metadata<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:8.0pt;font-family:"Lucida Console"">2014-02-04 05:10:51,024 DEBUG [ o.s.blitz.repo.ManagedImportRequestI] (3-thread-1) Plane:0 X:0 Y:2 TileWidth:1392 TileHeight:2 arrayBuf.length:5568<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:8.0pt;font-family:"Lucida Console"">2014-02-04 05:10:51,027 INFO [ loci.formats.in.MinimalTiffReader] (3-thread-1) Reading IFDs<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:8.0pt;font-family:"Lucida Console"">2014-02-04 05:10:51,041 INFO [ loci.formats.in.MinimalTiffReader] (3-thread-1) Populating metadata<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:8.0pt;font-family:"Lucida Console"">2014-02-04 05:10:51,377 INFO [ loci.formats.in.BaseTiffReader] (3-thread-1) Populating OME metadata<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:8.0pt;font-family:"Lucida Console"">2014-02-04 05:10:51,382 DEBUG [ o.s.blitz.repo.ManagedImportRequestI] (3-thread-1) Plane:0 X:0 Y:4 TileWidth:1392 TileHeight:2 arrayBuf.length:5568<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:8.0pt;font-family:"Lucida Console"">2014-02-04 05:10:51,384 INFO [ loci.formats.in.MinimalTiffReader] (3-thread-1) Reading IFDs<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:8.0pt;font-family:"Lucida Console"">2014-02-04 05:10:51,398 INFO [ loci.formats.in.MinimalTiffReader] (3-thread-1) Populating metadata<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:8.0pt;font-family:"Lucida Console"">2014-02-04 05:10:51,721 INFO [ loci.formats.in.BaseTiffReader] (3-thread-1) Populating OME metadata<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:8.0pt;font-family:"Lucida Console"">2014-02-04 05:10:51,727 DEBUG [ o.s.blitz.repo.ManagedImportRequestI] (3-thread-1) Plane:0 X:0 Y:6 TileWidth:1392 TileHeight:2 arrayBuf.length:5568<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:8.0pt;font-family:"Lucida Console"">2014-02-04 05:10:51,729 INFO [ loci.formats.in.MinimalTiffReader] (3-thread-1) Reading IFDs<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:8.0pt;font-family:"Lucida Console"">2014-02-04 05:10:51,743 INFO [ loci.formats.in.MinimalTiffReader] (3-thread-1) Populating metadata<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:8.0pt;font-family:"Lucida Console"">2014-02-04 05:10:52,100 INFO [ loci.formats.in.BaseTiffReader] (3-thread-1) Populating OME metadata<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:8.0pt;font-family:"Lucida Console"">2014-02-04 05:10:52,106 DEBUG [ o.s.blitz.repo.ManagedImportRequestI] (3-thread-1) Plane:0 X:0 Y:8 TileWidth:1392 TileHeight:2 arrayBuf.length:5568<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:8.0pt;font-family:"Lucida Console"">2014-02-04 05:10:52,109 INFO [ loci.formats.in.MinimalTiffReader] (3-thread-1) Reading IFDs<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:8.0pt;font-family:"Lucida Console"">2014-02-04 05:10:52,125 INFO [ loci.formats.in.MinimalTiffReader] (3-thread-1) Populating metadata<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:8.0pt;font-family:"Lucida Console"">2014-02-04 05:10:52,530 INFO [ loci.formats.in.BaseTiffReader] (3-thread-1) Populating OME metadata<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:8.0pt;font-family:"Lucida Console"">2014-02-04 05:10:52,624 DEBUG [ o.s.blitz.repo.ManagedImportRequestI] (3-thread-1) Plane:0 X:0 Y:10 TileWidth:1392 TileHeight:2 arrayBuf.length:5568<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:8.0pt;font-family:"Lucida Console"">2014-02-04 05:10:52,628 INFO [ loci.formats.in.MinimalTiffReader] (3-thread-1) Reading IFDs<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:8.0pt;font-family:"Lucida Console"">2014-02-04 05:10:52,649 INFO [ loci.formats.in.MinimalTiffReader] (3-thread-1) Populating metadata<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:8.0pt;font-family:"Lucida Console"">2014-02-04 05:10:53,021 INFO [ loci.formats.in.BaseTiffReader] (3-thread-1) Populating OME metadata<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:8.0pt;font-family:"Lucida Console"">2014-02-04 05:10:53,027 DEBUG [ o.s.blitz.repo.ManagedImportRequestI] (3-thread-1) Plane:0 X:0 Y:12 TileWidth:1392 TileHeight:2 arrayBuf.length:5568<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:8.0pt;font-family:"Lucida Console"">2014-02-04 05:10:53,030 INFO [ loci.formats.in.MinimalTiffReader] (3-thread-1) Reading IFDs<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:8.0pt;font-family:"Lucida Console"">2014-02-04 05:10:53,044 INFO [ loci.formats.in.MinimalTiffReader] (3-thread-1) Populating metadata<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:8.0pt;font-family:"Lucida Console"">2014-02-04 05:10:53,458 INFO [ loci.formats.in.BaseTiffReader] (3-thread-1) Populating OME metadata<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:8.0pt;font-family:"Lucida Console"">2014-02-04 05:10:53,464 DEBUG [ o.s.blitz.repo.ManagedImportRequestI] (3-thread-1) Plane:0 X:0 Y:14 TileWidth:1392 TileHeight:2 arrayBuf.length:5568<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoNormalCxSpMiddle" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;mso-add-space:auto">
<b><span style="font-size:9.0pt;font-family:"Arial","sans-serif";color:gray;mso-fareast-language:FR-BE">................................................................................<o:p></o:p></span></b></p>
<p class="MsoNormalCxSpMiddle" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;mso-add-space:auto">
<b><span style="font-size:10.0pt;font-family:"Arial","sans-serif";color:gray;mso-fareast-language:FR-BE">Dipl.-Ing. Christophe TREFOIS</span></b><span style="font-size:9.0pt;font-family:"Arial","sans-serif";color:gray;mso-fareast-language:FR-BE"><br>
<i>Ing. Sys. Com. Dipl. EPF <o:p></o:p></i></span></p>
<p class="MsoNormalCxSpMiddle" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto;mso-add-space:auto">
<span style="font-size:9.0pt;font-family:"Arial","sans-serif";color:gray;mso-fareast-language:FR-BE">PhD Candidate<o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;margin-bottom:3.0pt"><span style="font-size:7.5pt;font-family:"Arial","sans-serif";color:#1F497D;mso-fareast-language:FR-BE"><o:p> </o:p></span></p>
<p class="MsoNormalCxSpMiddle" style="mso-margin-top-alt:auto;margin-bottom:3.0pt;mso-add-space:auto">
<span style="font-size:8.0pt;font-family:"Arial","sans-serif";color:gray;mso-fareast-language:FR-LU">Université du Luxembourg | University of Luxembourg<o:p></o:p></span></p>
<p class="MsoNormalCxSpMiddle" style="mso-margin-top-alt:auto;margin-bottom:3.0pt;mso-add-space:auto">
<span style="font-size:8.0pt;font-family:"Arial","sans-serif";color:gray;mso-fareast-language:FR-LU">Campus Belval | House of Biomedicine<o:p></o:p></span></p>
<p class="MsoNormalCxSpMiddle" style="mso-margin-top-alt:auto;margin-bottom:3.0pt;mso-add-space:auto">
<span lang="FR-LU" style="font-size:8.0pt;font-family:"Arial","sans-serif";color:gray;mso-fareast-language:FR-LU">7, avenue des Hauts-Fourneaux<o:p></o:p></span></p>
<p class="MsoNormalCxSpMiddle" style="mso-margin-top-alt:auto;margin-bottom:3.0pt;mso-add-space:auto">
<span lang="FR-LU" style="font-size:8.0pt;font-family:"Arial","sans-serif";color:gray;mso-fareast-language:FR-LU">L-4362 Esch-sur-Alzette<o:p></o:p></span></p>
<p class="MsoNormalCxSpMiddle" style="mso-margin-top-alt:auto;margin-bottom:3.0pt;mso-add-space:auto">
<span lang="FR-LU" style="font-size:8.0pt;font-family:"Arial","sans-serif";color:gray;mso-fareast-language:FR-LU">T +352 46 66 44 6124<br>
F +352 46 66 44 6949<br>
<a href="http://www.uni.lu/lcsb"><span style="color:blue">www.uni.lu/lcsb</span></a><o:p></o:p></span></p>
<p class="MsoNormalCxSpMiddle" style="mso-margin-top-alt:auto;margin-bottom:3.0pt;mso-add-space:auto">
<span lang="FR-CH" style="font-size:7.5pt;font-family:"Arial","sans-serif";color:black;mso-fareast-language:FR-BE"><o:p> </o:p></span></p>
<p class="MsoNormal"><b><span lang="EN-US" style="font-size:7.5pt;font-family:"Arial","sans-serif";color:gray;mso-fareast-language:FR-BE">This message is confidential and may contain privileged information.
<o:p></o:p></span></b></p>
<p class="MsoNormal"><b><span lang="EN-US" style="font-size:7.5pt;font-family:"Arial","sans-serif";color:gray;mso-fareast-language:FR-BE">It is intended for the named recipient only.
<o:p></o:p></span></b></p>
<p class="MsoNormal"><b><span lang="EN-US" style="font-size:7.5pt;font-family:"Arial","sans-serif";color:gray;mso-fareast-language:FR-BE">If you receive it in error please notify me and permanently delete the original message and any copies.</span></b><b><span lang="EN-US" style="font-size:7.5pt;font-family:"Times New Roman","serif";color:gray;mso-fareast-language:FR-BE"><o:p></o:p></span></b></p>
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