<div dir="ltr">Hi Norihiko,<div><br></div><div>> <span style="font-family:arial,sans-serif;font-size:13px">I would not think we were ever able to connect OMERO to RStudio.</span></div><div><span style="font-family:arial,sans-serif;font-size:13px"><br>
</span></div><div>What you can do is use Bio7 [1] which integrates ImageJ + R, then add the OMERO plugins on top [2]. While the integration is indirect, it should be possible use Bio7's features to send image data from OMERO through ImageJ to R, and vice versa. I have not personally tried it, though.</div>
<div><br></div><div>Regards,</div><div>Curtis</div><div><br></div><div>[1] <a href="http://bio7.org/" target="_blank">http://bio7.org/</a></div><div>[2] <a href="http://help.openmicroscopy.org/imagej.html" target="_blank">http://help.openmicroscopy.org/imagej.html</a></div>
<div class="gmail_extra"><br><br><div class="gmail_quote">On Tue, Nov 26, 2013 at 9:40 AM, Petr Walczysko <span dir="ltr"><<a href="mailto:p.walczysko@dundee.ac.uk" target="_blank">p.walczysko@dundee.ac.uk</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Hi Norihiko<br>
<br>
Thanks for this.<br>
Unfortunately, we did not have any R bindings and we do not have them - that is why we do not have any documentation on this.<br>
So I would not think we were ever able to connect OMERO to RStudio.<br>
Sorry about this.<br>
<br>
All the best<br>
Petr<br>
<br>
<br>
<br>
On 26 Nov 2013, at 14:24, Norihiko Kobayashi <<a href="mailto:N.Kobayashi@dundee.ac.uk" target="_blank">N.Kobayashi@dundee.ac.uk</a>><br>
wrote:<br>
<br>
> Hi Petr,<br>
><br>
> Thanks for your lecture for me, and your information is so useful for me.<br>
> Last item is about R.<br>
> Half years ago, your group had another lecture, and I heard you could connect OMERO to RStudio like Fiji,<br>
> and treat OMERO data using R.<br>
> I did not realise how to do in that time, and I can not find out a document which describe about it in your webpage.<br>
> I appreciate if you could let me know where I should check to learn it.<br>
><br>
> Kind regards,<br>
> Nori<br>
><br>
><br>
><br>
><br>
> On 26 Nov 2013, at 13:30, Petr Walczysko <<a href="mailto:p.walczysko@dundee.ac.uk" target="_blank">p.walczysko@dundee.ac.uk</a>> wrote:<br>
><br>
>> Hi Nori<br>
>><br>
>> I am sorry, we forgot to deal with the last item of your list during the OMERO workshop.<br>
>> What was the item please ? Something with R…. - would you please remind me ?<br>
>> I will try to find out an answer for you as soon as possible.<br>
>> Thanks for your feedback today.<br>
>> Cheers<br>
>> Petr<br>
>><br>
>><br>
>> On 26 Nov 2013, at 12:15, Petr Walczysko <<a href="mailto:p.walczysko@dundee.ac.uk" target="_blank">p.walczysko@dundee.ac.uk</a>> wrote:<br>
>><br>
>>> <a href="http://fiji.sc/Fiji" target="_blank">http://fiji.sc/Fiji</a><br>
>>> On 26 Nov 2013, at 11:30, Petr Walczysko <<a href="mailto:p.walczysko@dundee.ac.uk" target="_blank">p.walczysko@dundee.ac.uk</a>><br>
>>> wrote:<br>
>>><br>
>>>> Link to install Matlab<br>
>>>><br>
>>>> <a href="https://my.dundee.ac.uk/webapps/portal/frameset.jsp?tab_group=community&url=%2Fwebapps%2Fblackboard%2Fcontent%2FcontentWrapper.jsp%3Fcontent_id%3D_3698245_1%26displayName%3DLinked%2BFile%26course_id%3D_28436_1%26navItem%3Dcontent%26attachment%3Dtrue%26href%3Dhttp%253A%252F%252Fmatlab-flex.lifesci.dundee.ac.uk%252F" target="_blank">https://my.dundee.ac.uk/webapps/portal/frameset.jsp?tab_group=community&url=%2Fwebapps%2Fblackboard%2Fcontent%2FcontentWrapper.jsp%3Fcontent_id%3D_3698245_1%26displayName%3DLinked%2BFile%26course_id%3D_28436_1%26navItem%3Dcontent%26attachment%3Dtrue%26href%3Dhttp%253A%252F%252Fmatlab-flex.lifesci.dundee.ac.uk%252F</a><br>
>>>><br>
>>>><br>
>>>><br>
>>>><br>
>>>> On 26 Nov 2013, at 11:24, Petr Walczysko <<a href="mailto:p.walczysko@dundee.ac.uk" target="_blank">p.walczysko@dundee.ac.uk</a>> wrote:<br>
>>>><br>
>>>>> Hi Nori<br>
>>>>> this is Petr form OME<br>
>>>>> Here is the link to lthe documentation.<br>
>>>>> for u-tack<br>
>>>>> <a href="https://www.openmicroscopy.org/site/products/partner" target="_blank">https://www.openmicroscopy.org/site/products/partner</a><br>
>>>>> Cheers<br>
>>>>> Petr<br>
>>>><br>
>>><br>
>><br>
><br>
<br>
<br>
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</blockquote></div><br></div></div>