<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Hi Ralph,<div><br></div><div>Unfortunately the OME schema does not support variable units for each attribute of the model. They are "hard coded" and for</div><div>pixel size it is microns. The ticket for adding support for different units is <a href="https://trac.openmicroscopy.org.uk/ome/ticket/3741">https://trac.openmicroscopy.org.uk/ome/ticket/3741</a></div><div><br></div><div>Cheers,</div><div><br></div><div> Will.</div><div><br></div><div><br></div><div> The ticket for support of units<br><div><div>On 30 Oct 2013, at 06:50, Ralph Sperling wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><div>Hi Melissa,<br><br>thanks - I had again a look and it seems the .dm4 files contain a field "Units=nm" (in ImageJ: Show Info).<br>So I guess the importer could read this field out and set the scale unit accordingly.<br>Please let me know if I can help with anything.<br><br>Cheers, Ralph<br><br>On 10.10.2013 17:23, Melissa Linkert wrote:<br><blockquote type="cite">Hi Ralph,<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite"><blockquote type="cite">thanks for pointing me to this mailing list. I have uploaded the<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">file but had to _rename_ it to from 8.dm4 to 8.dm3 because .dm4<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">files were not enabled for upload.<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">The image opens fine with both .dm4 or .dm3 suffixx. The field of<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">view or physical size is right in terms of the numbers but not the<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">unit. Microns are displayed but it should be nanometers, as it is a<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">TEM image.<br></blockquote></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">Thank you for uploading a sample file. There is a ticket on our issue<br></blockquote><blockquote type="cite">tracking system to address this (as you may have seen already):<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite"><a href="https://trac.openmicroscopy.org.uk/ome/ticket/11509">https://trac.openmicroscopy.org.uk/ome/ticket/11509</a><br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">You will receive an automated email each time that ticket is updated; if<br></blockquote><blockquote type="cite">you prefer not to receive those updates please let us know.<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">Regards,<br></blockquote><blockquote type="cite">-Melissa<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">On Thu, Oct 03, 2013 at 11:00:29PM +0200, Ralph Sperling wrote:<br></blockquote><blockquote type="cite"><blockquote type="cite">Hi Melissa,<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">thanks for pointing me to this mailing list. I have uploaded the<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">file but had to _rename_ it to from 8.dm4 to 8.dm3 because .dm4<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">files were not enabled for upload.<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">The image opens fine with both .dm4 or .dm3 suffixx. The field of<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">view or physical size is right in terms of the numbers but not the<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">unit. Microns are displayed but it should be nanometers, as it is a<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">TEM image.<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">Thanks and best regards,<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">Ralph<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">On 01.10.2013 01:01, Melissa Linkert wrote:<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">Hi Ralph,<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">I am CC'ing the ome-users mailing list<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">(<a href="http://www.openmicroscopy.org/site/community/mailing-lists">http://www.openmicroscopy.org/site/community/mailing-lists</a>), as that is the<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">best place to for Bio-Formats questions.<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">I saw your post about importing dm4 files and your kind offer about contacting the developers in regard to issues (<a href="http://imagej.1557.x6.nabble.com/DM4-td5004215.html">http://imagej.1557.x6.nabble.com/DM4-td5004215.html</a>) - here I have one:<br></blockquote></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">The dm4 import seems to work well, but the displayed scale of the image is um instead of nm, as it should be. The actual numbers are fine.<br></blockquote></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">Of course I would be happy to provide sample images, or any other information needed.<br></blockquote></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">Thank you for the bug report, and for offering to send sample files. If<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">you could please send one file that demonstrates the problem along with<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">the expected physical size of the image, that would be very helpful.<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">Files can be uploaded to:<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><a href="http://qa.openmicroscopy.org.uk/qa/upload/">http://qa.openmicroscopy.org.uk/qa/upload/</a><br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">Note that anything uploaded there is not made publicly available; it<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">would only be available to OME developers.<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">Regards,<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">-Melissa<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">On Sat, Sep 28, 2013 at 04:11:39PM -0700, <a href="mailto:ralphspg@gmail.com">ralphspg@gmail.com</a> wrote:<br></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">Hi Melissa, I saw your post about importing dm4 files and your kind offer about contacting the developers in regard to issues (<a href="http://imagej.1557.x6.nabble.com/DM4-td5004215.html">http://imagej.1557.x6.nabble.com/DM4-td5004215.html</a>) - here I have one:<br></blockquote></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">The dm4 import seems to work well, but the displayed scale of the image is um instead of nm, as it should be. The actual numbers are fine.<br></blockquote></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">Of course I would be happy to provide sample images, or any other information needed.<br></blockquote></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">Cheers, RAlph<br></blockquote></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">_____________________________________<br></blockquote></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><blockquote type="cite">Sent from <a href="http://imagej.1557.x6.nabble.com">http://imagej.1557.x6.nabble.com</a><br></blockquote></blockquote></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote></blockquote></blockquote>_______________________________________________<br>ome-users mailing list<br><a href="mailto:ome-users@lists.openmicroscopy.org.uk">ome-users@lists.openmicroscopy.org.uk</a><br>http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users<br></div></blockquote></div><br></div></body></html>