<div dir="ltr">Hi Michael,<div><br></div><div><div>> Actually, this is why I stay away from FIJI; too many things change</div><div>> too fast and get auto-updated before I have a chance to QC them.</div></div><div><br>
</div><div>Two comments about that:</div><div><br></div><div>1) We now ship stable releases of Bio-Formats with Fiji by default. If you want the daily builds, you have to explicitly enable them as described at <a href="http://fiji.sc/Bio-Formats#Daily_builds">http://fiji.sc/Bio-Formats#Daily_builds</a></div>
<div><br></div><div>2) You can of course turn off updating in Fiji, and only update when you need a new feature.</div><div><br></div><div>What is missing is the ability to "roll back" to a previous known-to-work state. We plan to add this to ImageJ2/Fiji in the future.</div>
<div><br></div><div>Regards,</div><div>Curtis</div></div><div class="gmail_extra"><br><br><div class="gmail_quote">On Thu, Sep 19, 2013 at 11:36 AM, Cammer, Michael <span dir="ltr"><<a href="mailto:Michael.Cammer@med.nyu.edu" target="_blank">Michael.Cammer@med.nyu.edu</a>></span> wrote:<br>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">Dear Curtis,<u></u><u></u></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d"><u></u> <u></u></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">Thank you for getting back to Chase so quickly while I was out to an early lunch.<u></u><u></u></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d"><u></u> <u></u></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">I sent him rev 750b4ab, built 2 May 2013 and he emailed me he thinks it's working.<u></u><u></u></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d"><u></u> <u></u></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">Let's see. If all is working fine now, I guess there was a change since then.
<u></u><u></u></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d"><u></u> <u></u></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">Actually, this is why I stay away from FIJI; too many things change too fast and get auto-updated before I have a chance to QC them.<u></u><u></u></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d"><u></u> <u></u></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">Regards,<u></u><u></u></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d"><u></u> <u></u></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">Michael<u></u><u></u></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d"><u></u> <u></u></span></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Kalinga","sans-serif"">________________________________________________________<u></u><u></u></span></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Kalinga","sans-serif"">Michael Cammer, Assistant Research Scientist<u></u><u></u></span></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Kalinga","sans-serif"">Microscopy Core, NYU Langone Medical Center & Skirball Institute of Biomolecular Medicine<u></u><u></u></span></p>
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Kalinga","sans-serif"">Cell: <a href="tel:%28914%29%20309-3270" value="+19143093270" target="_blank">(914) 309-3270</a> Microscopy Lab: <a href="tel:%28212%29%20263-7099" value="+12122637099" target="_blank">(212) 263-7099</a> Dustin Lab: <a href="tel:%28212%29%20263-3208" value="+12122633208" target="_blank">(212) 263-3208</a>
<u></u><u></u></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d"><u></u> <u></u></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d"><u></u> <u></u></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d"><u></u> <u></u></span></p>
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<p class="MsoNormal"><b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">From:</span></b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif""> <a href="mailto:ctrueden.wisc@gmail.com" target="_blank">ctrueden.wisc@gmail.com</a> [mailto:<a href="mailto:ctrueden.wisc@gmail.com" target="_blank">ctrueden.wisc@gmail.com</a>]
<b>On Behalf Of </b>Curtis Rueden<br>
<b>Sent:</b> Thursday, September 19, 2013 12:02 PM<br>
<b>To:</b> Demarest, Chase<br>
<b>Cc:</b> <a href="mailto:melissa@GLENCOESOFTWARE.COM" target="_blank">melissa@GLENCOESOFTWARE.COM</a>; Cammer, Michael; OME-users mailing list<br>
<b>Subject:</b> Re: LOCI bioformats importer<u></u><u></u></span></p>
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<p class="MsoNormal"><u></u> <u></u></p>
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<p class="MsoNormal">Hi Chase,<u></u><u></u></p>
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<p class="MsoNormal"><u></u> <u></u></p>
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<div>
<p class="MsoNormal">> I would like to reach the prompt where I can select distinct series.<u></u><u></u></p>
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<p class="MsoNormal"><u></u> <u></u></p>
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<p class="MsoNormal">The Series Options dialog will appear if:<u></u><u></u></p>
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<p class="MsoNormal">A) The dataset has multiple series; and<u></u><u></u></p>
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<p class="MsoNormal">B) The "Open all series" box is not checked.<u></u><u></u></p>
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<p class="MsoNormal"><u></u> <u></u></p>
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<p class="MsoNormal">Are you and your colleague both using the same .scn file?<u></u><u></u></p>
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<p class="MsoNormal"><u></u> <u></u></p>
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<p class="MsoNormal">If so, double check the version of Bio-Formats on each machine:<u></u><u></u></p>
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<p class="MsoNormal">Help > About Plugins > LOCI Plugins<u></u><u></u></p>
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<p class="MsoNormal"><u></u> <u></u></p>
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<p class="MsoNormal">Do you both have the same "revision" code and build date?<u></u><u></u></p>
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<p class="MsoNormal"><u></u> <u></u></p>
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<p class="MsoNormal">I suggest using Fiji with the latest Bio-Formats daily build, as described at:<u></u><u></u></p>
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<p class="MsoNormal"><a href="http://fiji.sc/Bio-Formats#Daily_builds" target="_blank">http://fiji.sc/Bio-Formats#Daily_builds</a><u></u><u></u></p>
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<p class="MsoNormal"><u></u> <u></u></p>
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<p class="MsoNormal">Regards,<u></u><u></u></p>
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<p class="MsoNormal">Curtis<u></u><u></u></p>
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<p class="MsoNormal" style="margin-bottom:12.0pt"><u></u> <u></u></p>
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<p class="MsoNormal">On Thu, Sep 19, 2013 at 10:51 AM, Demarest, Chase <<a href="mailto:Chase.Demarest@med.nyu.edu" target="_blank">Chase.Demarest@med.nyu.edu</a>> wrote:<u></u><u></u></p>
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<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">Hello Melissa and Curtis,
<u></u><u></u></span></p>
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<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif""><u></u> <u></u></span></p>
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<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">I am attempting to import an .scn image file into imageJ using the LOCI bioformats importer plugin. I would like to reach the prompt where I can select distinct series. Attached
are two screenshots, one is the import options screen that I reach when I select a file to import - when I click OK it loads the image without prompting for series options. The second screenshot is the series option prompt (from a colleague's PC) that I would
like to reach. I am working on a macbook pro laptop. Windowless is not checked in LOCI plugins preferences.<u></u><u></u></span></p>
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<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif""><u></u> <u></u></span></p>
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<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">Can you tell me if I am missing a step to reach the series options prompt?<u></u><u></u></span></p>
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<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif""><u></u> <u></u></span></p>
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<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">Thank you,<u></u><u></u></span></p>
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<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif""><u></u> <u></u></span></p>
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<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">Chase Demarest<u></u><u></u></span></p>
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<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">Blaser Lab<u></u><u></u></span></p>
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<p class="MsoNormal"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">NYU<u></u><u></u></span></p>
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<p class="MsoNormal"><u></u> <u></u></p>
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