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Hi John
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<div>Can I just check whether the following problems came after database migration from production OMERO 4.3 or just are just trying to install brand new OMERO 4.4.8 instance? Please give us more details of what exactly you manage to complete.</div>
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<div>I would strangly recommend you to use the latest package from <a href="https://www.openmicroscopy.org/site/products/omero/downloads">https://www.openmicroscopy.org/site/products/omero/downloads</a></div>
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<div>1. Do you have OMERO_PREFIX set up? </div>
<div>export OMERO_PREFIX=<span style="font-size:9pt; font-family:Calibri,sans-serif">/opt/OMERO.server-4.4.6-ice33-b102</span></div>
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<div>I definitely see some issues with PATH</div>
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<div>Please make sure is set up as follow <a href="https://www.openmicroscopy.org/site/support/omero4/sysadmins/unix/server-install-linux.html#environment-variables">https://www.openmicroscopy.org/site/support/omero4/sysadmins/unix/server-install-linux.html#environment-variables</a></div>
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<div>Please try to revert to 4.4.8 and give us full logs from omero/var/log including Blitz_0.log</div>
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Ola</div>
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<span style="font-family:Arial; font-size:12px; font-weight:bold">Aleksandra Tarkowska, M.Sc. Eng.</span></div>
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<div><span style="font-family:Arial">OME Software Developer</span></div>
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</span></font><span lang="en-GB" style="font-family:Tahoma">
<div style="margin:0pt; font-family:Arial"><font color="black">Wellcome Trust Centre for Gene Regulation & Expression</font></div>
<div style="margin:0pt; font-family:Arial"><font color="black">College of Life Sciences</font></div>
<div style="margin:0pt; font-family:Arial"><font color="black">MSI/WTB/JBC Complex</font></div>
<div style="margin:0pt; font-family:Arial"><font color="black">University of Dundee</font></div>
<div style="margin:0pt; font-family:Arial"><font color="black">Dow Street</font></div>
<div style="margin:0pt"><font face="Calibri,sans-serif" style="font-family:Arial"><font color="black">Dundee DD1 5EH<br>
United Kingdom</font></font></div>
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<div>On 9 Jul 2013, at 11:38, John Webber (NBI) <<a href="mailto:John.Webber@nbi.ac.uk">John.Webber@nbi.ac.uk</a>> wrote:</div>
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All,</div>
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I have recently created a new Omero server (version 4.4.8), but I have not been able to configure this new server to authenticate using LDAP.</div>
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I have configured the LDAP properties in “/opt/OMERO.server-4.4.8-ice33-b256/etc/omero.properties” to be identical to another Omero server that I have already build, which is running Omero version 4.4.6. I have also issued the command lines to set the appropriate
variables, (bin/omero config set omero.ldap.*). The LDAP authentication is, however, still failing on the new server.</div>
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When I attempt to login to the new server with a User that is configured to use LDAP, I see the following</div>
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<span style="font-size:10pt">2013-07-09 10:26:59,121 INFO [ ome.services.util.ServiceHandler] (l.Server-8) Excp: java.lang.ClassCastException: [B cannot be cast to java.lang.Comparable</span></div>
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<span style="font-size:10pt">2013-07-09 10:26:59,122 ERROR [services.blitz.fire.PermissionsVerifierI] (l.Server-8) Exception thrown while checking password for:webberj</span></div>
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<span style="font-size:10pt">ome.conditions.InternalException: Wrapped Exception: (java.lang.ClassCastException):</span></div>
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<span style="font-size:10pt">[B cannot be cast to java.lang.Comparable</span></div>
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<span style="font-size:10pt"> at java.util.TreeMap.compare(TreeMap.java:1188)</span></div>
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<span style="font-size:10pt"> …</span></div>
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I have checked the for the Java and LDAP packages that are installed on my server (which is running “CentOS release 5.9 (Final)”), but I believe that these look correct.</div>
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Please can anyone give me some guidance as to what this issue might be related to?</div>
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Thanks</div>
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John</div>
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<b><span style="font-size:10pt; font-family:Arial,sans-serif; color:rgb(79,129,189)">-------------------------------------------------------------------------------------------------------------------------------------------- </span></b><span style="color:rgb(15,18,111)"></span></div>
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<b><span style="font-family:Arial,sans-serif; color:rgb(84,141,212)">John Webber<br>
</span></b><span style="color:rgb(31,73,125)">Computing and Information Services</span><span style="color:rgb(15,18,111)"></span></div>
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<span style="color:rgb(31,73,125)">NBI Partnership Ltd</span><span style="color:rgb(15,18,111)"></span></div>
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<span style="color:rgb(31,73,125)">Norwich Research park</span><span style="color:rgb(15,18,111)"></span></div>
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<span style="color:rgb(31,73,125)">Colney Lane</span><span style="color:rgb(15,18,111)"></span></div>
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<span style="color:rgb(31,73,125)">Norwich</span><span style="color:rgb(15,18,111)"></span></div>
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<span style="color:rgb(31,73,125)">NR4 7UH</span><span style="color:rgb(15,18,111)"></span></div>
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<span style="color:rgb(31,73,125)"> </span><span style="color:rgb(15,18,111)"></span></div>
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<span style="color:rgb(31,73,125)">E-Mail: <span class="Apple-converted-space"> </span><a href="mailto:john.webber@nbi.ac.uk" style="color:rgb(149,79,114); text-decoration:underline"><span style="color:blue">john.webber@nbi.ac.uk</span></a></span><span style="color:rgb(15,18,111)"></span></div>
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<span style="color:rgb(31,73,125)">Web: <span class="Apple-converted-space"> </span><a href="http://www.nbi.ac.uk" style="color:rgb(149,79,114); text-decoration:underline"><span style="color:blue">http://www.nbi.ac.uk</span></a></span><span style="color:rgb(15,18,111)"></span></div>
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<span style="color:rgb(31,73,125)">Tel: +44(0)1603 450 818</span><span style="color:rgb(15,18,111)"></span></div>
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<i><span style="color:rgb(31,73,125)">The NBI Partnership Ltd provides non-scientific services to the Institute of Food Research, the John Innes Centre, The Genome Analysis Centre and The Sainsbury Laboratory</span></i><span style="color:rgb(15,18,111)"></span></div>
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