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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Great – Thank you Simon, that worked.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Thanks for your help.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">John<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
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<p class="MsoNormal" style="line-height:12.0pt;background:white"><span style="color:#4F81BD"><o:p> </o:p></span></p>
<p class="MsoNormal" style="line-height:12.0pt;background:white"><b><span style="font-size:10.0pt;font-family:"Arial","sans-serif";color:#4F81BD">-------------------------------------------------------------------------------------------------------------------------------------------- <o:p></o:p></span></b></p>
<p class="MsoNormal" style="line-height:12.0pt;background:white"><b><span style="font-family:"Arial","sans-serif";color:#548DD4">John Webber<br>
</span></b><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Computing and Information Services<o:p></o:p></span></p>
<p class="MsoNormal" style="line-height:12.0pt;background:white"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">NBI Partnership Ltd<o:p></o:p></span></p>
<p class="MsoNormal" style="line-height:12.0pt;background:white"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Norwich Research park<o:p></o:p></span></p>
<p class="MsoNormal" style="line-height:12.0pt;background:white"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Colney Lane<o:p></o:p></span></p>
<p class="MsoNormal" style="line-height:12.0pt;background:white"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Norwich</span><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p></o:p></span></p>
<p class="MsoNormal" style="line-height:12.0pt;background:white"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">NR4 7UH<o:p></o:p></span></p>
<p class="MsoNormal" style="line-height:12.0pt;background:white"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal" style="line-height:12.0pt;background:white"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">E-Mail: john.webber@nbi.ac.uk<o:p></o:p></span></p>
<p class="MsoNormal" style="line-height:12.0pt;background:white"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Web: http://www.nbi.ac.uk<o:p></o:p></span></p>
<p class="MsoNormal" style="line-height:12.0pt;background:white"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Tel: +44(0)1603 450 818<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><i><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">The NBI Partnership Ltd provides non-scientific services to the Institute of Food Research, the John Innes Centre, The Genome Analysis Centre and The Sainsbury
Laboratory<o:p></o:p></span></i></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
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<p class="MsoNormal"><b><span lang="EN-US" style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">From:</span></b><span lang="EN-US" style="font-size:10.0pt;font-family:"Tahoma","sans-serif""> Simon Li [mailto:s.p.li@dundee.ac.uk]
<br>
<b>Sent:</b> 01 March 2013 12:24<br>
<b>To:</b> John Webber (NBI)<br>
<b>Cc:</b> ome-users@lists.openmicroscopy.org.uk<br>
<b>Subject:</b> Re: [ome-users] Upgrade issues from 4.3.4 to 4.4.6<o:p></o:p></span></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">Hi John<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">Are you using Python 2.4? If so this is due to the inadvertent use of the try-except-finally syntax which is incompatible with Python 2.4:<o:p></o:p></p>
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<p class="MsoNormal"><a href="http://lists.openmicroscopy.org.uk/pipermail/ome-users/2013-February/003564.html">http://lists.openmicroscopy.org.uk/pipermail/ome-users/2013-February/003564.html</a><o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">The corrected version of admin.py will be in the next bug fix release, in the meantime you can download it here:<o:p></o:p></p>
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<p class="MsoNormal"><a href="https://raw.github.com/bpindelski/openmicroscopy/58729dbcfad50b6b7f540d4c1a13f2e79ae5fd2e/components/tools/OmeroPy/src/omero/plugins/admin.py">https://raw.github.com/bpindelski/openmicroscopy/58729dbcfad50b6b7f540d4c1a13f2e79ae5fd2e/components/tools/OmeroPy/src/omero/plugins/admin.py</a><o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">Sorry for any inconvenience<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">Simon<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">On 1 Mar 2013, at 11:50, "John Webber (NBI)" <<a href="mailto:John.Webber@nbi.ac.uk">John.Webber@nbi.ac.uk</a>><o:p></o:p></p>
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<p class="MsoNormal"> wrote:<o:p></o:p></p>
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<p class="MsoNormal"><br>
<br>
<o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">Hi,<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""> <o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">I have had some issues upgrading from Omero version 4.3.4 up to 4.4.6<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""> <o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">When I attempt to use “bin/omero admin<span class="apple-converted-space"> </span><i>anything</i>” I see the following errors:<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""> <o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Calibri","sans-serif"">Error loading: /opt/OMERO.server-4.4.6-ice33-b102/lib/python/omero/plugins/admin.py</span><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""><o:p></o:p></span></p>
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<div style="margin-left:36.0pt">
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Calibri","sans-serif"">Traceback (most recent call last):</span><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""><o:p></o:p></span></p>
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<div style="margin-left:36.0pt">
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Calibri","sans-serif""> File "/opt/OMERO.server-4.4.6-ice33-b102/lib/python/omero/cli.py", line 1138, in loadpath</span><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""><o:p></o:p></span></p>
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<div style="margin-left:36.0pt">
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Calibri","sans-serif""> execfile( str(pathobj), loc )</span><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""><o:p></o:p></span></p>
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<div style="margin-left:36.0pt">
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Calibri","sans-serif""> File "/opt/OMERO.server-4.4.6-ice33-b102/lib/python/omero/plugins/admin.py", line 434</span><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""><o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Calibri","sans-serif""> finally:</span><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""><o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Calibri","sans-serif""> ^</span><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""><o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Calibri","sans-serif"">SyntaxError: invalid syntax</span><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""><o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Calibri","sans-serif"">Error loading: /opt/OMERO.server-4.4.6-ice33-b102/lib/python/omero/plugins/node.py</span><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""><o:p></o:p></span></p>
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<div style="margin-left:36.0pt">
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Calibri","sans-serif"">Traceback (most recent call last):</span><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""><o:p></o:p></span></p>
</div>
<div style="margin-left:36.0pt">
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Calibri","sans-serif""> File "/opt/OMERO.server-4.4.6-ice33-b102/lib/python/omero/cli.py", line 1138, in loadpath</span><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""><o:p></o:p></span></p>
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<div style="margin-left:36.0pt">
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Calibri","sans-serif""> execfile( str(pathobj), loc )</span><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""><o:p></o:p></span></p>
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<div style="margin-left:36.0pt">
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Calibri","sans-serif""> File "/opt/OMERO.server-4.4.6-ice33-b102/lib/python/omero/plugins/node.py", line 17, in ?</span><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""><o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Calibri","sans-serif""> from omero.plugins.admin import AdminControl</span><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""><o:p></o:p></span></p>
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<div style="margin-left:36.0pt">
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Calibri","sans-serif""> File "/opt/OMERO.server-4.4.6-ice33-b102/lib/python/omero/plugins/admin.py", line 434</span><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""><o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Calibri","sans-serif""> finally:</span><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""><o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Calibri","sans-serif""> ^</span><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""><o:p></o:p></span></p>
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<div style="margin-left:36.0pt">
<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Calibri","sans-serif"">SyntaxError: invalid syntax</span><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""><o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Calibri","sans-serif""> </span><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""><o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">Please can you advice where I can start to correct this issue?<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""><br>
Thanks<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">John<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""> <o:p></o:p></span></p>
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<p class="MsoNormal" style="line-height:12.0pt;background:white"><span style="color:#4F81BD"> </span><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""><o:p></o:p></span></p>
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<p class="MsoNormal" style="line-height:12.0pt;background:white"><b><span style="font-size:10.0pt;font-family:"Arial","sans-serif";color:#4F81BD">-------------------------------------------------------------------------------------------------------------------------------------------- </span></b><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""><o:p></o:p></span></p>
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<p class="MsoNormal" style="line-height:12.0pt;background:white"><b><span style="font-family:"Arial","sans-serif";color:#548DD4">John Webber<br>
</span></b><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">Computing and Information Services<o:p></o:p></span></p>
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<p class="MsoNormal" style="line-height:12.0pt;background:white"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">NBI Partnership Ltd<o:p></o:p></span></p>
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<p class="MsoNormal" style="line-height:12.0pt;background:white"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">Norwich Research park<o:p></o:p></span></p>
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<p class="MsoNormal" style="line-height:12.0pt;background:white"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">Colney Lane<o:p></o:p></span></p>
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<p class="MsoNormal" style="line-height:12.0pt;background:white"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">Norwich<o:p></o:p></span></p>
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<p class="MsoNormal" style="line-height:12.0pt;background:white"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">NR4 7UH<o:p></o:p></span></p>
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<p class="MsoNormal" style="line-height:12.0pt;background:white"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""> <o:p></o:p></span></p>
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<p class="MsoNormal" style="line-height:12.0pt;background:white"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">E-Mail: <span class="apple-converted-space"> </span><a href="mailto:john.webber@nbi.ac.uk"><span style="color:purple">john.webber@nbi.ac.uk</span></a><o:p></o:p></span></p>
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<p class="MsoNormal" style="line-height:12.0pt;background:white"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">Web: <span class="apple-converted-space"> </span><a href="http://www.nbi.ac.uk/"><span style="color:purple">http://www.nbi.ac.uk</span></a><o:p></o:p></span></p>
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<div>
<p class="MsoNormal" style="line-height:12.0pt;background:white"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">Tel: +44(0)1603 450 818<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""> <o:p></o:p></span></p>
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<p class="MsoNormal"><i><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">The NBI Partnership Ltd provides non-scientific services to the Institute of Food Research, the John Innes Centre, The Genome Analysis Centre and The Sainsbury Laboratory</span></i><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""><o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""> <o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:13.5pt;font-family:"Helvetica","sans-serif"">_______________________________________________<br>
ome-users mailing list<br>
<a href="mailto:ome-users@lists.openmicroscopy.org.uk"><span style="color:purple">ome-users@lists.openmicroscopy.org.uk</span></a><br>
<a href="http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users"><span style="color:purple">http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users</span></a><o:p></o:p></span></p>
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<p class="MsoNormal"><br>
<br>
<span style="font-size:10.0pt">The University of Dundee is a registered Scottish Charity, No: SC015096</span>
<o:p></o:p></p>
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