<html><head><meta http-equiv="Content-Type" content="text/html charset=windows-1252"><meta http-equiv="Content-Type" content="text/html charset=windows-1252"><base href="x-msg://209/"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Hi all,<div><br></div><div>We also have three TriMScope's here at the Centenary Institute and would be very interested in .msr support in Bioformats.</div><div><br></div><div>As noted we do use the OME-TIFF export but direct access would be an advantage.</div><div><br></div><div><div>Regards,</div><div><br></div><div>Adrian Smith</div><div>Centenary Institute, Sydney, Australia</div></div><div><br></div><div><br><div><div>On 15/02/2013, at 2:58 AM, "Paul Thomas (BIO)" <<a href="mailto:P.Thomas@uea.ac.uk">P.Thomas@uea.ac.uk</a>> wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><div lang="EN-GB" link="blue" vlink="purple" style="font-family: Helvetica; font-size: medium; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: -webkit-auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><div class="WordSection1" style="page: WordSection1; "><div style="margin: 0cm 0cm 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif; "><font size="2" color="#1f497d" face="Book Antiqua"><span style="font-size: 11pt; font-family: 'Book Antiqua', serif; color: rgb(31, 73, 125); ">Hi Jmarie,<o:p></o:p></span></font></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif; "><font size="2" color="#1f497d" face="Book Antiqua"><span style="font-size: 11pt; font-family: 'Book Antiqua', serif; color: rgb(31, 73, 125); ">We already use the export to ome.tif and then open in ImageJ, but it is just one more step to carry out. I’ve already uploaded some example images to your “trac” site.<o:p></o:p></span></font></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif; "><font size="2" color="#1f497d" face="Book Antiqua"><span style="font-size: 11pt; font-family: 'Book Antiqua', serif; color: rgb(31, 73, 125); ">Thanks,<o:p></o:p></span></font></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif; "><font size="2" color="#1f497d" face="Book Antiqua"><span style="font-size: 11pt; font-family: 'Book Antiqua', serif; color: rgb(31, 73, 125); ">Paul.<o:p></o:p></span></font></div><div><div style="margin: 0cm 0cm 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif; "><font size="2" color="#1f497d" face="Calibri"><span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125); ">____________________<o:p></o:p></span></font></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif; "><font size="2" color="#1f497d" face="Calibri"><span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125); ">Dr. Paul Thomas, Director,<o:p></o:p></span></font></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif; "><font size="2" color="#1f497d" face="Calibri"><span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125); ">The Henry Wellcome Laboratory for Cell Imaging,<o:p></o:p></span></font></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif; "><font size="2" color="#1f497d" face="Calibri"><span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125); ">School of Biological Sciences,<o:p></o:p></span></font></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif; "><font size="2" color="#1f497d" face="Calibri"><span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125); ">University of East Anglia,<o:p></o:p></span></font></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif; "><font size="2" color="#1f497d" face="Calibri"><span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125); ">Norwich Research Park,<o:p></o:p></span></font></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif; "><font size="2" color="#1f497d" face="Calibri"><span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125); ">Norwich,<o:p></o:p></span></font></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif; "><font size="2" color="#1f497d" face="Calibri"><span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125); ">NR4 7TJ,<o:p></o:p></span></font></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif; "><font size="2" color="#1f497d" face="Calibri"><span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125); ">United Kingdom.<o:p></o:p></span></font></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif; "><font size="2" color="#1f497d" face="Calibri"><span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125); "> </span></font></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif; "><font size="2" color="#1f497d" face="Calibri"><span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125); ">e-mail:<span class="Apple-converted-space"> </span><a href="mailto:p.thomas@uea.ac.uk" style="color: purple; text-decoration: underline; ">p.thomas@uea.ac.uk</a><o:p></o:p></span></font></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif; "><font size="2" color="#1f497d" face="Calibri"><span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125); ">Tel: +44-1603-592196<o:p></o:p></span></font></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif; "><font size="2" color="#1f497d" face="Calibri"><span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125); ">Fax: +44-1603-592250<o:p></o:p></span></font></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif; "><font size="2" color="#1f497d" face="Calibri"><span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125); ">Imaging web-site:<span class="Apple-converted-space"> </span><a href="https://lred.uea.ac.uk/web/henry-wellcome-laboratory-for-cell-imaging/welcome" style="color: purple; text-decoration: underline; ">https://lred.uea.ac.uk/web/henry-wellcome-laboratory-for-cell-imaging/welcome</a><o:p></o:p></span></font></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif; "><font size="2" color="#1f497d" face="Calibri"><span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125); ">Personal web-page:<span class="Apple-converted-space"> </span><a href="http://biobis.bio.uea.ac.uk/biosql/fac_show.aspx?ID=548" style="color: purple; text-decoration: underline; ">http://biobis.bio.uea.ac.uk/biosql/fac_show.aspx?ID=548</a><o:p></o:p></span></font></div></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif; "><font size="2" color="#1f497d" face="Book Antiqua"><span style="font-size: 11pt; font-family: 'Book Antiqua', serif; color: rgb(31, 73, 125); "> </span></font></div><div style="border-style: none none none solid; border-left-width: 1.5pt; border-left-color: blue; padding: 0cm 0cm 0cm 4pt; "><div><div style="border-style: solid none none; border-top-width: 1pt; border-top-color: rgb(181, 196, 223); padding: 3pt 0cm 0cm; "><div style="margin: 0cm 0cm 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif; "><b><font size="2" face="Tahoma"><span lang="EN-US" style="font-size: 10pt; font-family: Tahoma, sans-serif; font-weight: bold; ">From:</span></font></b><font size="2" face="Tahoma"><span lang="EN-US" style="font-size: 10pt; font-family: Tahoma, sans-serif; "><span class="Apple-converted-space"> </span>Jean-Marie Burel [mailto:j.burel@<a href="http://dundee.ac.uk">dundee.ac.uk</a>]<span class="Apple-converted-space"> </span><br><b><span style="font-weight: bold; ">Sent:</span></b><span class="Apple-converted-space"> </span>14 February 2013 15:55<br><b><span style="font-weight: bold; ">To:</span></b><span class="Apple-converted-space"> </span>Paul Thomas (BIO); <a href="mailto:ome-users@lists.openmicroscopy.org.uk">ome-users@lists.openmicroscopy.org.uk</a><br><b><span style="font-weight: bold; ">Subject:</span></b><span class="Apple-converted-space"> </span>Re: [ome-users] ImSpectorPro support<o:p></o:p></span></font></div></div></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif; "><font size="3" face="Times New Roman"><span style="font-size: 12pt; "> </span></font></div><div><div style="margin: 0cm 0cm 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif; "><font size="2" face="Calibri"><span style="font-size: 10.5pt; font-family: Calibri, sans-serif; ">Dear Paul<o:p></o:p></span></font></div></div><div><div style="margin: 0cm 0cm 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif; "><font size="2" face="Calibri"><span style="font-size: 10.5pt; font-family: Calibri, sans-serif; "> </span></font></div></div><div><div style="margin: 0cm 0cm 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif; "><font size="2" face="Calibri"><span style="font-size: 10.5pt; font-family: Calibri, sans-serif; ">Thanks for your interest.<o:p></o:p></span></font></div></div><div><div style="margin: 0cm 0cm 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif; "><font size="2" face="Calibri"><span style="font-size: 10.5pt; font-family: Calibri, sans-serif; "> </span></font></div></div><div><div style="margin: 0cm 0cm 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif; "><font size="2" face="Calibri"><span style="font-size: 10.5pt; font-family: Calibri, sans-serif; ">The format is not supported and we have not yet discussed adding support for it but we will certainly be interested with sample data. <o:p></o:p></span></font></div></div><div><div style="margin: 0cm 0cm 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif; "><font size="2" face="Calibri"><span style="font-size: 10.5pt; font-family: Calibri, sans-serif; ">Other institutions have expressed similar interest.<o:p></o:p></span></font></div></div><div><div style="margin: 0cm 0cm 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif; "><font size="3" face="Times New Roman"><span style="font-size: 12pt; "> </span></font></div></div><div><div style="margin: 0cm 0cm 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif; "><font size="2" face="Calibri"><span style="font-size: 10.5pt; font-family: Calibri, sans-serif; ">You should have an option to save the file as an OME-TIFF instead of the proprietary format, you will then be able to open the images using Bioformats<o:p></o:p></span></font></div></div><div><div style="margin: 0cm 0cm 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif; "><font size="2" face="Calibri"><span style="font-size: 10.5pt; font-family: Calibri, sans-serif; "> </span></font></div></div><div><div style="margin: 0cm 0cm 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif; "><font size="2" face="Calibri"><span style="font-size: 10.5pt; font-family: Calibri, sans-serif; ">Regards<o:p></o:p></span></font></div></div><div><div style="margin: 0cm 0cm 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif; "><font size="2" face="Calibri"><span style="font-size: 10.5pt; font-family: Calibri, sans-serif; "> </span></font></div></div><div><div style="margin: 0cm 0cm 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif; "><font size="2" face="Calibri"><span style="font-size: 10.5pt; font-family: Calibri, sans-serif; ">Jmarie<o:p></o:p></span></font></div></div><div><div style="margin: 0cm 0cm 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif; "><font size="2" face="Calibri"><span style="font-size: 10.5pt; font-family: Calibri, sans-serif; "> </span></font></div></div><div><div style="margin: 0cm 0cm 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif; "><font size="2" face="Calibri"><span style="font-size: 10.5pt; font-family: Calibri, sans-serif; "> </span></font></div></div><div style="margin: 0cm 0cm 0.0001pt; font-size: 12pt; font-family: 'Times New Roman', serif; "><font size="3" face="Times New Roman"><span style="font-size: 12pt; "><br>The University of Dundee is a registered Scottish Charity, No: SC015096<o:p></o:p></span></font></div></div></div>_______________________________________________<br>ome-users mailing list<br><a href="mailto:ome-users@lists.openmicroscopy.org.uk">ome-users@lists.openmicroscopy.org.uk</a><br><a href="http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users">http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users</a></div></blockquote></div><br></div></body></html>