Hi Sam,<div><br></div><div>Sorry for the delay in reply; I got busy with the ImageJ 2.0.0-beta4 release. In the future, to avoid such delays, please CC the OME-users list.</div><div><br></div><div>I tested your file with the latest trunk build of Bio-Formats, and it seems to be working now. The fix will be included in the forthcoming 4.4.4 release of Bio-Formats; we will update Fiji accordingly as soon as 4.4.4 is ready.</div>
<div><br></div><div>Regards,</div><div>Curtis</div><div><br></div><div><br><div class="gmail_quote">On Wed, Sep 5, 2012 at 4:20 PM, Sam Johnson <span dir="ltr"><<a href="mailto:sam.johnson@duke.edu" target="_blank">sam.johnson@duke.edu</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Thanks Curtis. I had updated FIJI and Bioformats but not luck. I'm using win32. It gets to the import options but on clicking ok I get<div>
<br></div><div><div>java.lang.NullPointerException</div><div><span style="white-space:pre-wrap"> </span>at loci.formats.in.LIFReader.translateDetectors(LIFReader.java:1106)</div>
<div><span style="white-space:pre-wrap"> </span>at loci.formats.in.LIFReader.translateMetadata(LIFReader.java:958)</div><div><span style="white-space:pre-wrap"> </span>at loci.formats.in.LIFReader.initMetadata(LIFReader.java:485)</div>
<div><span style="white-space:pre-wrap"> </span>at loci.formats.in.LIFReader.initFile(LIFReader.java:431)</div><div><span style="white-space:pre-wrap"> </span>at loci.formats.FormatReader.setId(FormatReader.java:1178)</div>
<div><span style="white-space:pre-wrap"> </span>at loci.plugins.in.ImportProcess.initializeFile(ImportProcess.java:482)</div><div><span style="white-space:pre-wrap"> </span>at loci.plugins.in.ImportProcess.execute(ImportProcess.java:146)</div>
<div><span style="white-space:pre-wrap"> </span>at loci.plugins.in.Importer.showDialogs(Importer.java:141)</div><div><span style="white-space:pre-wrap"> </span>at loci.plugins.in.Importer.run(Importer.java:79)</div>
<div><span style="white-space:pre-wrap"> </span>at loci.plugins.LociImporter.run(LociImporter.java:81)</div><div><span style="white-space:pre-wrap"> </span>at ij.IJ.runUserPlugIn(IJ.java:185)</div>
<div><span style="white-space:pre-wrap"> </span>at ij.IJ.runPlugIn(IJ.java:152)</div><div><span style="white-space:pre-wrap"> </span>at ij.IJ.runPlugIn(IJ.java:141)</div><div><span style="white-space:pre-wrap"> </span>at HandleExtraFileTypes.openImage(HandleExtraFileTypes.java:375)</div>
<div><span style="white-space:pre-wrap"> </span>at HandleExtraFileTypes.run(HandleExtraFileTypes.java:53)</div><div><span style="white-space:pre-wrap"> </span>at ij.IJ.runUserPlugIn(IJ.java:185)</div>
<div><span style="white-space:pre-wrap"> </span>at ij.IJ.runPlugIn(IJ.java:152)</div><div><span style="white-space:pre-wrap"> </span>at ij.IJ.runPlugIn(IJ.java:141)</div><div><span style="white-space:pre-wrap"> </span>at ij.io.Opener.openWithHandleExtraFileTypes(Opener.java:413)</div>
<div><span style="white-space:pre-wrap"> </span>at ij.io.Opener.openImage(Opener.java:288)</div><div><span style="white-space:pre-wrap"> </span>at ij.io.Opener.openImage(Opener.java:309)</div>
<div><span style="white-space:pre-wrap"> </span>at ij.io.Opener.open(Opener.java:138)</div><div><span style="white-space:pre-wrap"> </span>at ij.io.Opener.openAndAddToRecent(Opener.java:224)</div>
<div><span style="white-space:pre-wrap"> </span>at ij.plugin.DragAndDrop.openFile(DragAndDrop.java:176)</div><div><span style="white-space:pre-wrap"> </span>at ij.plugin.DragAndDrop.run(DragAndDrop.java:152)</div>
<div><span style="white-space:pre-wrap"> </span>at java.lang.Thread.run(Thread.java:662)</div><div><br></div><div>I attach a small example file</div><div><br></div><div>Many thanks</div><div><br></div><div>
Sam</div><div><div class="h5"><br><div class="gmail_quote">On Wed, Sep 5, 2012 at 3:53 PM, Curtis Rueden <span dir="ltr"><<a href="mailto:ctrueden@wisc.edu" target="_blank">ctrueden@wisc.edu</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
Hi Sam,<div><br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex"><br>We had the new leica SP8 system in for demo last week. I believe they have changed the file format slightly for LASAF3 and I can't open any of the data in FIJI. I can give you an example file if you don't have one.</blockquote>
<div><br></div><div>Can you please update your Fiji to the latest (Help > Update Fiji) and try again?</div><div><br></div><div>If you still have trouble, you can send us a sample non-working file using Help > Upload Sample Image.</div>
<div><br></div><div>Thanks,</div><div>Curtis</div><div><br><br><div class="gmail_quote">On Wed, Sep 5, 2012 at 10:05 AM, <span dir="ltr"><<a href="mailto:sam.johnson@duke.edu" target="_blank">sam.johnson@duke.edu</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Sam Johnson sent a message using the contact form at <a href="http://loci.wisc.edu/contact" target="_blank">http://loci.wisc.edu/contact</a>.<br>
<br>
Hello<br>
<br>
We had the new leica SP8 system in for demo last week. I believe they have changed the file format slightly for LASAF3 and I can't open any of the data in FIJI. I can give you an example file if you don't have one.<br>
<br>
Thanks for your wonderful plugin<br>
<br>
Cheers<br>
<br>
Sam<br>
</blockquote></div><br></div>
</blockquote></div><br><br clear="all"><div><br></div></div></div>-- <br>Sam Johnson, PhD<br>Director, Light Microscopy Core Facility<br>Duke University and Duke University Medical Center<br>4215 French Family Science Center, Science Drive<br>
Box 90338<br>Durham, NC 27708<br>USA<br><br><a href="mailto:sam.johnson@duke.edu" target="_blank">sam.johnson@duke.edu</a><br>Tel. <a href="tel:%28919%29%20613-8216" value="+19196138216" target="_blank">(919) 613-8216</a><br>
Fax. <a href="tel:%28919%29%20613-8177" value="+19196138177" target="_blank">(919) 613-8177</a><br><a href="http://microscopy.duke.edu" target="_blank">http://microscopy.duke.edu</a><br>
</div>
</blockquote></div><br></div>