Hi Melissa,<br><br>Thanks for your response. It would be great to get automated emails on the ticket. Could you please add myself and Anitha (cc'd)?<br><br>I hope all is going well with you,<br><br>Cheers,<br><br>Kim<br>
<br><div class="gmail_quote">On 28 August 2012 08:28, Melissa Linkert <span dir="ltr"><<a href="mailto:melissa@glencoesoftware.com" target="_blank">melissa@glencoesoftware.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
Hi Kim,<br>
<div class="im"><br>
> I am trying to load an ndpi file for one of my researchers and get the<br>
> following error. If the file is too large are there any way for me to<br>
> convert it so it can be loaded and viewed in OMERO?<br>
<br>
</div>At the moment, not really. We are very aware of this problem, and have<br>
a solution in the works as documented here:<br>
<br>
<a href="http://trac.openmicroscopy.org.uk/ome/ticket/5092" target="_blank">http://trac.openmicroscopy.org.uk/ome/ticket/5092</a><br>
<br>
We hope to have this working in time for the 4.5 release of OMERO. If<br>
you would like to receive automated emails as we update the status of<br>
the above ticket, please let me know and I would be happy to CC you.<br>
<br>
Regards,<br>
-Melissa<br>
<div><div class="h5"><br>
On Fri, Aug 24, 2012 at 09:30:49AM +1000, Kim Linton wrote:<br>
> Hi There,<br>
><br>
> I am trying to load an ndpi file for one of my researchers and get the<br>
> following error. If the file is too large are there any way for me to<br>
> convert it so it can be loaded and viewed in OMERO?<br>
> Cheers,<br>
> Kim<br>
><br>
><br>
> ava.lang.RuntimeException: Width or height > 65500 is not supported.<br>
> at loci.formats.codec.JPEGTileDecoder.initialize(JPEGTileDecoder.java:117)<br>
> at loci.formats.in.NDPIReader.setupService(NDPIReader.java:360)<br>
> at loci.formats.in.NDPIReader.openBytes(NDPIReader.java:113)<br>
> at loci.formats.ImageReader.openBytes(ImageReader.java:414)<br>
> at loci.formats.ChannelFiller.openBytes(ChannelFiller.java:197)<br>
> at loci.formats.ChannelFiller.openBytes(ChannelFiller.java:189)<br>
> at loci.formats.ChannelSeparator.openBytes(ChannelSeparator.java:197)<br>
> at loci.formats.ReaderWrapper.openBytes(ReaderWrapper.java:317)<br>
> at loci.formats.MinMaxCalculator.openBytes(MinMaxCalculator.java:273)<br>
> at<br>
> ome.formats.importer.ImportLibrary.writeDataTileBased(ImportLibrary.java:872)<br>
> at ome.formats.importer.ImportLibrary.importData(ImportLibrary.java:797)<br>
> at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:573)<br>
> at<br>
> org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6335)<br>
> at<br>
> org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1248)<br>
> at<br>
> org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:85)<br>
> at<br>
> org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:54)<br>
> at<br>
> org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:110)<br>
> at<br>
> org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)<br>
> at<br>
> org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)<br>
> at<br>
> org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)<br>
> at<br>
> org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)<br>
> at<br>
> org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)<br>
> at<br>
> org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)<br>
> at java.lang.Thread.run(Thread.java:680)<br>
><br>
> at<br>
> org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6384)<br>
> at<br>
> org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1248)<br>
> at<br>
> org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:85)<br>
> at<br>
> org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:54)<br>
> at<br>
> org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:110)<br>
> at<br>
> org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)<br>
> at<br>
> org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)<br>
> at<br>
> org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)<br>
> at<br>
> org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)<br>
> at<br>
> org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)<br>
> at<br>
> org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)<br>
> at java.lang.Thread.run(Thread.java:680)<br>
> Caused by: java.lang.RuntimeException: Width or height > 65500 is not<br>
> supported.<br>
> at loci.formats.codec.JPEGTileDecoder.initialize(JPEGTileDecoder.java:117)<br>
> at loci.formats.in.NDPIReader.setupService(NDPIReader.java:360)<br>
> at loci.formats.in.NDPIReader.openBytes(NDPIReader.java:113)<br>
> at loci.formats.ImageReader.openBytes(ImageReader.java:414)<br>
> at loci.formats.ChannelFiller.openBytes(ChannelFiller.java:197)<br>
> at loci.formats.ChannelFiller.openBytes(ChannelFiller.java:189)<br>
> at loci.formats.ChannelSeparator.openBytes(ChannelSeparator.java:197)<br>
> at loci.formats.ReaderWrapper.openBytes(ReaderWrapper.java:317)<br>
> at loci.formats.MinMaxCalculator.openBytes(MinMaxCalculator.java:273)<br>
> at<br>
> ome.formats.importer.ImportLibrary.writeDataTileBased(ImportLibrary.java:872)<br>
> at ome.formats.importer.ImportLibrary.importData(ImportLibrary.java:797)<br>
> at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:573)<br>
> at<br>
> org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6335)<br>
> ... 11 more<br>
><br>
><br>
> --<br>
> Kim Linton<br>
> Senior Research Systems Facilitator/Lead for the e-Research Portfolio<br>
> Monash e-Research Centre<br>
> Building 75<br>
> Monash University<br>
> Clayton Victoria 3800, Australia<br>
> Ph: +61 3 99020712<br>
> Mob: 0408 972 629<br>
> Fax: +61 3 9902-0193<br>
> Email: <a href="mailto:kim.linton@monash.edu">kim.linton@monash.edu</a><br>
> Web: <a href="http://www.monash.edu.au/eresearch" target="_blank">http://www.monash.edu.au/eresearch</a><br>
> Part time: Mon, Tues, Thurs & Fri<br>
<br>
</div></div>> _______________________________________________<br>
> ome-users mailing list<br>
> <a href="mailto:ome-users@lists.openmicroscopy.org.uk">ome-users@lists.openmicroscopy.org.uk</a><br>
> <a href="http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users" target="_blank">http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users</a><br>
<br>
</blockquote></div><br><br clear="all"><br>-- <br><span style="font-family:arial,sans-serif;font-size:medium"><table style="padding-top:0px;padding-right:0px;padding-bottom:0px;padding-left:0px;border-collapse:collapse;background-color:rgb(255,255,255);width:832px;background-repeat:initial initial" cellpadding="0">
<tbody><tr><td style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;font-family:arial,sans-serif;vertical-align:top;padding-top:0px;padding-right:0px;padding-bottom:0px;padding-left:0px"><div style="padding-top:0px;padding-right:0px;padding-bottom:1px;padding-left:0px">
<div><div style="padding-top:4px;padding-right:8px;padding-bottom:4px;padding-left:8px"><div><div style="clear:both;padding-bottom:0px"><div style="margin-bottom:10px;border-right-width:1px;border-bottom-width:1px;border-left-width:1px;border-top-style:solid;border-right-style:solid;border-bottom-style:solid;border-left-style:solid;border-top-color:rgb(239,239,239);border-right-color:rgb(239,239,239);border-left-color:rgb(239,239,239);border-bottom-color:rgb(226,226,226);border-top-width:0px;border-top-left-radius:7px 7px;border-top-right-radius:7px 7px;border-bottom-right-radius:7px 7px;border-bottom-left-radius:7px 7px;width:583px">
<div style="padding-top:3px;background-color:rgb(255,255,255);border-right-width:1px;border-bottom-width:1px;border-left-width:1px;border-right-style:solid;border-bottom-style:solid;border-left-style:solid;border-right-color:rgb(188,188,188);border-bottom-color:rgb(188,188,188);border-left-color:rgb(188,188,188);border-top-width:1px;border-top-style:solid;border-top-color:rgb(188,188,188);border-top-left-radius:7px 7px;border-top-right-radius:7px 7px;border-bottom-right-radius:7px 7px;border-bottom-left-radius:7px 7px">
<div><div><div><div><div style="font-size:13px;margin-top:5px;margin-right:15px;margin-bottom:5px;margin-left:15px;padding-bottom:20px"><div><div style="color:rgb(0,0,0)"><font color="#888888">Kim Linton<br>Senior Research Systems Facilitator/Lead for the e-Research Portfolio<br>
Monash e-Research Centre<br>Building 75<br>Monash University<br>Clayton Victoria 3800, Australia<br>Ph: <a value="+61399058681" style="color:rgb(0,0,204)">+61 3 99020712</a></font></div><div><font><span style="color:rgb(136,136,136)">Mob: </span><font color="#3333ff">0408 972 629</font><font color="#0000cc"><br>
</font>Fax: <a value="+61399020193" style="color:rgb(0,0,204)">+61 3 9902-0193</a><br>Email: <a href="mailto:kim.linton@monash.edu" style="color:rgb(0,0,204)" target="_blank">kim.linton@monash.edu</a><br>Web: <a href="http://www.monash.edu.au/eresearch" style="color:rgb(0,0,204)" target="_blank">http://www.monash.edu.au/eresearch</a></font></div>
</div><div><font color="#999999">Part time: Mon, Tues, Thurs & Fri</font></div></div></div></div></div></div></div></div></div></div></div></div></div></td></tr></tbody></table></span><div><font color="#888888" face="arial, sans-serif"><span style="border-collapse:collapse"><br>
</span></font></div><div></div><br>