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<p class="MsoNormal"><span style="font-size:11.0pt; font-family:"Calibri","sans-serif"; color:#1F497D">Hi Kim-</span></p>
<p class="MsoNormal"><span style="font-size:11.0pt; font-family:"Calibri","sans-serif"; color:#1F497D"> </span></p>
<p class="MsoNormal"><span style="font-size:11.0pt; font-family:"Calibri","sans-serif"; color:#1F497D">As decribed in our recent paper on OMERO:</span></p>
<p class="MsoNormal"><span style="font-size:11.0pt; font-family:"Calibri","sans-serif"; color:#1F497D"> </span></p>
<p class="MsoNormal"><span style="font-size:11.0pt; font-family:"Calibri","sans-serif"; color:#1F497D">http://www.openmicroscopy.org/site/about/publications</span></p>
<p class="MsoNormal"><span style="font-size:11.0pt; font-family:"Calibri","sans-serif"; color:#1F497D"> </span></p>
<p class="MsoNormal"><span style="font-size:11.0pt; font-family:"Calibri","sans-serif"; color:#1F497D">We’ve used OMERO to hold EM data of a variety of types:</span></p>
<p class="MsoNormal"><span style="font-size:11.0pt; font-family:"Calibri","sans-serif"; color:#1F497D"> </span></p>
<p class="MsoNormal"><span style="font-size:11.0pt; font-family:"Calibri","sans-serif"; color:#1F497D"><a href="http://emdb.openmicroscopy.org.uk/webemdb/">http://emdb.openmicroscopy.org.uk/webemdb/</a></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt; font-family:"Calibri","sans-serif"; color:#1F497D"> </span></p>
<p class="MsoNormal"><span style="font-size:11.0pt; font-family:"Calibri","sans-serif"; color:#1F497D">I‘ve heard anecdotally of people using Columbus, Perkin-Elmer’s commercial version of OMERO, to manage EM data. Obviously, if Bio-Formats supports the data,
then OMERO (more or less) supports the data.</span></p>
<p class="MsoNormal"><span style="font-size:11.0pt; font-family:"Calibri","sans-serif"; color:#1F497D"> </span></p>
<p class="MsoNormal"><span style="font-size:11.0pt; font-family:"Calibri","sans-serif"; color:#1F497D">OMERO’s data model, as released doesn’t explicitly include support for tomographic tilt series. The data would go in, but the metadata will be wrong. A
proposed solution for this is here:</span></p>
<p class="MsoNormal"><span style="font-size:11.0pt; font-family:"Calibri","sans-serif"; color:#1F497D"> </span></p>
<p class="MsoNormal"><span style="font-size:11.0pt; font-family:"Calibri","sans-serif"; color:#1F497D"><a href="http://www.openmicroscopy.org/site/support/file-formats/working-with-ome-xml/6d-7d-and-8d-storage">http://www.openmicroscopy.org/site/support/file-formats/working-with-ome-xml/6d-7d-and-8d-storage</a></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt; font-family:"Calibri","sans-serif"; color:#1F497D"> </span></p>
<p class="MsoNormal"><span style="font-size:11.0pt; font-family:"Calibri","sans-serif"; color:#1F497D">The only other issue will be images from very large format cameras—OMERO, as released will treat these images as “Big Images”, calculate pyramids etc.</span></p>
<p class="MsoNormal"><span style="font-size:11.0pt; font-family:"Calibri","sans-serif"; color:#1F497D"> </span></p>
<p class="MsoNormal"><span style="font-size:11.0pt; font-family:"Calibri","sans-serif"; color:#1F497D">If you give us more detail about the specific type of electron microscopy you are interested in, we can probably tell you more about what you can and might
do.</span></p>
<p class="MsoNormal"><span style="font-size:11.0pt; font-family:"Calibri","sans-serif"; color:#1F497D"> </span></p>
<p class="MsoNormal"><span style="font-size:11.0pt; font-family:"Calibri","sans-serif"; color:#1F497D">Hope that helps.</span></p>
<p class="MsoNormal"><span style="font-size:11.0pt; font-family:"Calibri","sans-serif"; color:#1F497D"> </span></p>
<p class="MsoNormal"><span style="font-size:11.0pt; font-family:"Calibri","sans-serif"; color:#1F497D">Cheers,</span></p>
<p class="MsoNormal"><span style="font-size:11.0pt; font-family:"Calibri","sans-serif"; color:#1F497D"> </span></p>
<p class="MsoNormal"><span style="font-size:11.0pt; font-family:"Calibri","sans-serif"; color:#1F497D">Jason</span></p>
<p class="MsoNormal"><a name="_MailEndCompose"><span style="font-size:11.0pt; font-family:"Calibri","sans-serif"; color:#1F497D"> </span></a></p>
<p class="MsoNormal"><b><span lang="EN-US" style="font-size:10.0pt; font-family:"Tahoma","sans-serif"">From:</span></b><span lang="EN-US" style="font-size:10.0pt; font-family:"Tahoma","sans-serif""> ome-users-bounces@lists.openmicroscopy.org.uk [mailto:ome-users-bounces@lists.openmicroscopy.org.uk]
<b>On Behalf Of </b>Kim Linton<br>
<b>Sent:</b> Monday, May 21, 2012 7:44 AM<br>
<b>To:</b> ome-users@lists.openmicroscopy.org.uk<br>
<b>Subject:</b> [ome-users] OMERO for Electron Microscopy</span></p>
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<p class="MsoNormal">Hi There,</p>
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<p class="MsoNormal">I am interested to see if anyone has used OMERO for Electron Microscopy?</p>
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<p class="MsoNormal">From what I can tell the file format are part of bioformats. </p>
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<p class="MsoNormal">Cheers,</p>
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<p class="MsoNormal">Kim<br clear="all">
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<p class="MsoNormal">-- <span style="font-size:13.5pt; font-family:"Arial","sans-serif"">
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<p class="MsoNormal" style="background:white"><span style="font-size:10.0pt; font-family:"Arial","sans-serif"; color:#888888">Kim Linton<br>
Senior Research Systems Facilitator<br>
Monash e-Research Centre<br>
Building 75<br>
Monash University<br>
Clayton Victoria 3800, Australia<br>
Ph: +61 3 99020712</span><span style="font-size:10.0pt; font-family:"Arial","sans-serif"; color:black"></span></p>
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<p class="MsoNormal" style="background:white"><span style="font-size:10.0pt; font-family:"Arial","sans-serif"; color:#888888">Mob: </span><span style="font-size:10.0pt; font-family:"Arial","sans-serif"; color:#3333FF">0408 972 629</span><span style="font-size:10.0pt; font-family:"Arial","sans-serif"; color:#0000CC"><br>
</span><span style="font-size:10.0pt; font-family:"Arial","sans-serif"">Fax: +61 3 9902-0193<br>
Email: <a href="mailto:kim.linton@monash.edu" target="_blank"><span style="color:#0000CC">kim.linton@monash.edu</span></a><br>
Web: <a href="http://www.monash.edu.au/eresearch" target="_blank"><span style="color:#0000CC">http://www.monash.edu.au/eresearch</span></a></span></p>
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<p class="MsoNormal" style="background:white"><span style="font-size:10.0pt; font-family:"Arial","sans-serif"; color:#999999">Part time: Mon, Tues, Thurs & Fri</span><span style="font-size:10.0pt; font-family:"Arial","sans-serif""></span></p>
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