<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div></div><div><br></div><div> Cheers,</div><div><br></div><div> Will. </div><div><br></div><div><br></div><div><br><div><div>On 14 Nov 2011, at 03:30, Kim Linton wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite">Hi Will,<br><br>Thanks for looking into this issue for us. So all the functionality is there i.e. it will load all the images but it is very slow. It says in the log that it will be fixed in Version 5.0. Is there an approximate timeframe for this?<br>
<br>Thanks for your help,<br><br>Kim Linton<br><br><div class="gmail_quote">On 11 November 2011 21:13, Will Moore <span dir="ltr"><<a href="mailto:will@lifesci.dundee.ac.uk" target="_blank">will@lifesci.dundee.ac.uk</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div style="word-wrap:break-word">Hi Leon,<div><br></div><div> The file seems to import OK, except for the largest of the 7 images. 95k x 45k (see screen-shots). </div><div><br></div><div>The largest image doesn't import - This is a known issue: <a href="http://trac.openmicroscopy.org.uk/ome/ticket/6500" target="_blank">http://trac.openmicroscopy.org.uk/ome/ticket/6500</a> </div>
<div>"SizeX * SizeY exceeds Integer.MAX_VALUE."</div><div><br></div><div>When we give you the warning "Please try again later", this is when the image pyramids are being built on the server. Just takes time. </div>
<div><br></div><div><br></div><div> Will. </div><div><br></div><div><br></div><div><img src="x-msg://1587/" height="735" width="1255"><img src="x-msg://1587/" height="720" width="981"></div><div><br><div><div><div>On 11 Nov 2011, at 00:54, Leon Kolchinsky wrote:</div>
<br></div><blockquote type="cite"><div dir="ltr"><div>Hello,<div><br></div><div>We're trying to use .svs files with OMERO (latest 4.3.3 version) and experiencing some issues with that.</div><div><br></div></div>
<div>When .svs file uploaded via "Insight" it appears in the client as following - (checkout the screenshot <span style="font-family:arial, sans-serif;font-size:13px;background-color:rgb(245, 245, 245)"></span>)</div>
<div>
<div>It should look like this - (checkout screenshot <a href="https://mail.google.com/mail/?ui=2&ik=c2449854ef&view=att&th=133901bdcecab120&attid=0.1&disp=safe&realattid=f_guugh9y10&zw" style="font-size:13px;color:rgb(34, 34, 34);font-family:arial, sans-serif;background-color:rgb(245, 245, 245)" target="_blank">svs thumbnail.tiff</a>).</div>
<div><br></div><div>Can you please test it and tell us how to fix the problem?</div><div><br></div><div>Sample .svs file provided here - <a href="https://cloudstor.aarnet.edu.au/filesender/?vid=99FF5385-A079-29C7-3B5D-90178BFC6ED7" target="_blank">https://cloudstor.aarnet.edu.au/filesender/?vid=99FF5385-A079-29C7-3B5D-90178BFC6ED7</a></div>
<div><br></div><div><div dir="ltr"><span style="font-family:arial, sans-serif;font-size:13px;border-collapse:collapse;color:rgb(80, 0, 80)"><div>Thanks,</div><div>Leon Kolchinsky</div></span></div><br>
<br><br><div class="gmail_quote">---------- Forwarded message ----------<br>From: <b class="gmail_sendername">Kim Linton</b> <span dir="ltr"><<a href="mailto:kim.linton@monash.edu" target="_blank">kim.linton@monash.edu</a>></span><br>
Date: Fri, Nov 11, 2011 at 11:44<br>Subject: OMERO - SVS file format functionality<br>To: Leon Kolchinsky <<a href="mailto:leon.kolchinsky@monash.edu" target="_blank">leon.kolchinsky@monash.edu</a>><br><br><br><div>
he Rendering Engine. Image not ready. Please try again later.' I also get an error message when trying to view the image in Image J via the OMERO plugin. I have tried loading the file including archive and without.<br>
<br>Attached is a the thumbnail of the image.</div></div><br></div></div></div>
<span><svs thumbnail.tiff></span><span><2011-11-11_115031.jpg></span>_______________________________________________<br>ome-users mailing list<br><a href="mailto:ome-users@lists.openmicroscopy.org.uk" target="_blank">ome-users@lists.openmicroscopy.org.uk</a><br>
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<div><div><div><div><div style="font-size:13px;margin-top:5px;margin-right:15px;margin-bottom:5px;margin-left:15px;padding-bottom:20px"><div style="color:rgb(0, 0, 0)"><div><font color="#888888">Kim Linton<br>Senior Research Systems Facilitator<br>
Monash e-Research Centre<br>Building 75<br>Monash University<br>Clayton Victoria 3800, Australia<br>Ph: <a value="+61399058681" style="color:rgb(0, 0, 204)">+61 3 99020712</a><br>Fax: <a value="+61399020193" style="color:rgb(0, 0, 204)">+61 3 9902-0193</a><br>
Email: <a href="mailto:kim.linton@monash.edu" style="color:rgb(0, 0, 204)" target="_blank">kim.linton@monash.edu</a><br>Web: <a href="http://www.monash.edu.au/eresearch" style="color:rgb(0, 0, 204)" target="_blank">http://www.monash.edu.au/eresearch</a></font></div>
</div><div><font color="#999999">Part time: Mon, Tues, Thurs & Fri</font></div></div></div></div></div></div></div></div></div></div></div></div></div></td></tr></tbody></table></span><div><font color="#888888" face="arial, sans-serif"><span style="border-collapse:collapse"><br>
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