<div dir="ltr">Hi,<div><br></div><div>Sure, thanks for asking.</div><div>I've just moved to a separate version of python - python2.6 which specifically installed for omero user.</div><div><div dir="ltr"><span style="font-family:arial, sans-serif;font-size:13px;border-collapse:collapse;color:rgb(80, 0, 80)"><div>
<br></div><div>Cheers,</div><div>Leon Kolchinsky</div></span></div><br>
<br><br><div class="gmail_quote">On Fri, Aug 19, 2011 at 00:08, Josh Moore <span dir="ltr"><<a href="mailto:josh@glencoesoftware.com">josh@glencoesoftware.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;">
Hi Leon,<br>
<br>
did your recent reconfiguration of Python solve this issue?<br>
<br>
Cheers,<br>
<font color="#888888">~Josh.<br>
</font><div><div></div><div class="h5"><br>
On Aug 5, 2011, at 7:20 AM, Leon Kolchinsky wrote:<br>
<br>
> Hello,<br>
><br>
> I've installed all prerequisits for omero according to<br>
> <a href="http://www.openmicroscopy.org/site/support/omero4/server/installation" target="_blank">http://www.openmicroscopy.org/site/support/omero4/server/installation</a><br>
><br>
> Please see below output of - /srv/omeroserver/bin/omero config set<br>
> <a href="http://omero.db.name" target="_blank">omero.db.name</a> 'omero'<br>
><br>
> Ice installed using yum according to<br>
> <a href="http://www.zeroc.com/download_3_3_1.html" target="_blank">http://www.zeroc.com/download_3_3_1.html</a>.<br>
><br>
> I'm running RHEL5.7<br>
><br>
> Any help greatly appreciated.<br>
><br>
> [omero@vera143 ~]$ echo $PATH<br>
> /usr/kerberos/bin:/usr/local/bin:/bin:/usr/bin:/usr/lib64/python2.4/site-packages/Ice/:/usr/lib64/python2.4/site-packages/tables:/srv/PostgresPlus/9.0SS/bin/:/srv/PostgresPlus/9.0SS/pgAdmin3/bin:/srv/omeroserver/bin<br>
><br>
> [omero@vera143 ~]$ export<br>
> PYTHONPATH=/usr/lib64/python2.4:/usr/lib64/python2.4/site-packages/Ice/:/usr/lib64/python2.4/site-packages/tables<br>
><br>
> [omero@vera143 ~]$ /srv/omeroserver/bin/omero config set <a href="http://omero.db.name" target="_blank">omero.db.name</a>'omero'<br>
> Error loading: /srv/omeroserver/lib/python/omero/plugins/prefs.py<br>
> Traceback (most recent call last):<br>
> File "/srv/omeroserver/lib/python/omero/cli.py", line 1115, in loadpath<br>
> execfile( str(pathobj), loc )<br>
> File "/srv/omeroserver/lib/python/omero/plugins/prefs.py", line 22, in ?<br>
> from omero.config import ConfigXml<br>
> File "/srv/omeroserver/lib/python/omero/config.py", line 31, in ?<br>
> from elementtree.ElementTree import XML, Element, SubElement, Comment,<br>
> ElementTree, tostring<br>
> File "/usr/lib/python2.4/site-packages/elementtree/ElementTree.py", line<br>
> 755, in ?<br>
> _escape = re.compile(eval(r'u"[&<>\"\u0080-\uffff]+"'))<br>
> File "/usr/lib64/python2.4/sre.py", line 180, in compile<br>
> return _compile(pattern, flags)<br>
> File "/usr/lib64/python2.4/sre.py", line 225, in _compile<br>
> p = sre_compile.compile(pattern, flags)<br>
> File "/usr/lib64/python2.4/sre_compile.py", line 500, in compile<br>
> code = _code(p, flags)<br>
> File "/usr/lib64/python2.4/sre_compile.py", line 484, in _code<br>
> _compile(code, p.data, flags)<br>
> File "/usr/lib64/python2.4/sre_compile.py", line 77, in _compile<br>
> _compile(code, av[2], flags)<br>
> File "/usr/lib64/python2.4/sre_compile.py", line 52, in _compile<br>
> _compile_charset(av, flags, code, fixup)<br>
> File "/usr/lib64/python2.4/sre_compile.py", line 178, in _compile_charset<br>
> for op, av in _optimize_charset(charset, fixup):<br>
> File "/usr/lib64/python2.4/sre_compile.py", line 221, in _optimize_charset<br>
> return _optimize_unicode(charset, fixup)<br>
> File "/usr/lib64/python2.4/sre_compile.py", line 341, in _optimize_unicode<br>
> mapping = array.array('b', mapping).tostring()<br>
> AttributeError: 'module' object has no attribute 'array'<br>
> Error loading: /srv/omeroserver/lib/python/omero/plugins/node.py<br>
> Traceback (most recent call last):<br>
> File "/srv/omeroserver/lib/python/omero/cli.py", line 1115, in loadpath<br>
> execfile( str(pathobj), loc )<br>
> File "/srv/omeroserver/lib/python/omero/plugins/node.py", line 17, in ?<br>
> from omero.plugins.admin import AdminControl<br>
> File "/srv/omeroserver/lib/python/omero/plugins/admin.py", line 27, in ?<br>
> import omero.config<br>
> File "/srv/omeroserver/lib/python/omero/config.py", line 31, in ?<br>
> from elementtree.ElementTree import XML, Element, SubElement, Comment,<br>
> ElementTree, tostring<br>
> File "/usr/lib/python2.4/site-packages/elementtree/ElementTree.py", line<br>
> 755, in ?<br>
> _escape = re.compile(eval(r'u"[&<>\"\u0080-\uffff]+"'))<br>
> File "/usr/lib64/python2.4/sre.py", line 180, in compile<br>
> return _compile(pattern, flags)<br>
> File "/usr/lib64/python2.4/sre.py", line 225, in _compile<br>
> p = sre_compile.compile(pattern, flags)<br>
> File "/usr/lib64/python2.4/sre_compile.py", line 500, in compile<br>
> code = _code(p, flags)<br>
> File "/usr/lib64/python2.4/sre_compile.py", line 484, in _code<br>
> _compile(code, p.data, flags)<br>
> File "/usr/lib64/python2.4/sre_compile.py", line 77, in _compile<br>
> _compile(code, av[2], flags)<br>
> File "/usr/lib64/python2.4/sre_compile.py", line 52, in _compile<br>
> _compile_charset(av, flags, code, fixup)<br>
> File "/usr/lib64/python2.4/sre_compile.py", line 178, in _compile_charset<br>
> for op, av in _optimize_charset(charset, fixup):<br>
> File "/usr/lib64/python2.4/sre_compile.py", line 221, in _optimize_charset<br>
> return _optimize_unicode(charset, fixup)<br>
> File "/usr/lib64/python2.4/sre_compile.py", line 341, in _optimize_unicode<br>
> mapping = array.array('b', mapping).tostring()<br>
> AttributeError: 'module' object has no attribute 'array'<br>
> Error loading: /srv/omeroserver/lib/python/omero/plugins/admin.py<br>
> Traceback (most recent call last):<br>
> File "/srv/omeroserver/lib/python/omero/cli.py", line 1115, in loadpath<br>
> execfile( str(pathobj), loc )<br>
> File "/srv/omeroserver/lib/python/omero/plugins/admin.py", line 27, in ?<br>
> import omero.config<br>
> File "/srv/omeroserver/lib/python/omero/config.py", line 31, in ?<br>
> from elementtree.ElementTree import XML, Element, SubElement, Comment,<br>
> ElementTree, tostring<br>
> File "/usr/lib/python2.4/site-packages/elementtree/ElementTree.py", line<br>
> 755, in ?<br>
> _escape = re.compile(eval(r'u"[&<>\"\u0080-\uffff]+"'))<br>
> File "/usr/lib64/python2.4/sre.py", line 180, in compile<br>
> return _compile(pattern, flags)<br>
> File "/usr/lib64/python2.4/sre.py", line 225, in _compile<br>
> p = sre_compile.compile(pattern, flags)<br>
> File "/usr/lib64/python2.4/sre_compile.py", line 500, in compile<br>
> code = _code(p, flags)<br>
> File "/usr/lib64/python2.4/sre_compile.py", line 484, in _code<br>
> _compile(code, p.data, flags)<br>
> File "/usr/lib64/python2.4/sre_compile.py", line 77, in _compile<br>
> _compile(code, av[2], flags)<br>
> File "/usr/lib64/python2.4/sre_compile.py", line 52, in _compile<br>
> _compile_charset(av, flags, code, fixup)<br>
> File "/usr/lib64/python2.4/sre_compile.py", line 178, in _compile_charset<br>
> for op, av in _optimize_charset(charset, fixup):<br>
> File "/usr/lib64/python2.4/sre_compile.py", line 221, in _optimize_charset<br>
> return _optimize_unicode(charset, fixup)<br>
> File "/usr/lib64/python2.4/sre_compile.py", line 341, in _optimize_unicode<br>
> mapping = array.array('b', mapping).tostring()<br>
> AttributeError: 'module' object has no attribute 'array'<br>
> usage: /srv/omeroserver/bin/omero [-h] [-v] [-d DEBUG] [--path PATH] [-C]<br>
> [-s SERVER] [-p PORT] [-g GROUP] [-u USER]<br>
> [-w PASSWORD] [-k KEY]<br>
> <subcommand> ...<br>
> /srv/omeroserver/bin/omero: error: argument <subcommand>: invalid choice:<br>
> 'config'<br>
><br>
> choose from:<br>
> cecog, db, delete, download, export, group, help, hql, import,<br>
> ldap, load, login, logout, perf, quit, script, server, sessions,<br>
> shell, testengine, upload, user, version, web<br>
><br>
><br>
> Cheers,<br>
> Leon Kolchinsky<br>
<br>
</div></div></blockquote></div><br></div></div>