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We are hesitating about whether to switch to OMERO for handling our
own large confocal image collection. We do a lot of post-hoc image
analysis and R is our glue platform for batch processing and final
analysis. I would therefore be interested to hear about this. What I
can add is that there are some existing bridges between R and
ImageJ, but I have not got round to trying these myself:<br>
<br>
<a class="moz-txt-link-freetext" href="http://cran.r-project.org/web/packages/RImageJ/index.html">http://cran.r-project.org/web/packages/RImageJ/index.html</a><br>
<a class="moz-txt-link-freetext" href="http://bio7.org/">http://bio7.org/</a><br>
<br>
You might then be able to load images from/into R via the ImageJ
OMERO plugins. <br>
<br>
There are also RODBC and RpgSQL packages on CRAN that will let you
talk directly to the postgresql database.<br>
<br>
Best wishes,<br>
<br>
Greg.<br>
<blockquote style="border: 0px none;"
cite="mid:E1A54123-3EEF-42BA-B633-69FE464EB9E5@igh.cnrs.fr"
type="cite">
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<td style="padding-top:4px;" valign="top"><img
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<font color="#888888">29 July 2011 12:27</font></td>
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Hi everyone,
<div><br>
</div>
<div>Is there, or is someone working on a way to interface R
with OMERO. The idea is use R to analyze the (meta)data linked
to the images. In particular those coming from the high
content screenings.</div>
<div><br>
</div>
<div>Thanks,</div>
<div><br>
</div>
<div>Julio<br>
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<div class="moz-signature">-- <br>
Gregory Jefferis, PhD
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<br>
<a class="moz-txt-link-freetext" href="http://www2.mrc-lmb.cam.ac.uk/group-leaders/h-to-m/g-jefferis">http://www2.mrc-lmb.cam.ac.uk/group-leaders/h-to-m/g-jefferis</a><br>
<a class="moz-txt-link-freetext" href="http://www.neuroscience.cam.ac.uk/directory/profile.php?gsxej2">http://www.neuroscience.cam.ac.uk/directory/profile.php?gsxej2</a><br>
<a class="moz-txt-link-freetext" href="http://flybrain.stanford.edu">http://flybrain.stanford.edu</a><br>
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