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So do we assume that Bitplane/Imaris has purchased a commercial
license for ICE? I guess that is one way round the problem!<br>
<br>
Best,<br>
<br>
Greg.<br>
<br>
<blockquote style="border: 0px none;"
cite="mid:2EBB29CB9A8F494FB5253F6AF2E6A1980AE1A8@hoshi.uni.lux"
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<td style="padding-top:4px;" valign="top"><img
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<td style="padding-left:5px;" valign="top"><a
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href="mailto:christophe.trefois@uni.lu"
style="color:#2057EF !important;text-decoration:none
!important;">Christophe TREFOIS</a><br>
<font color="#888888">20 July 2011 13:41</font></td>
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<p class="MsoNormal"><span style="color:#1F497D">Dear Gregory,<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D">I’m not sure
if this can be done, but in v 7.3 of Imaris, their API is
now through ICE as well.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D">In that case,
a direct communication could maybe occur?<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D">Best Regards,<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D">--<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D">Christophe<o:p></o:p></span></p>
<div>
<p class="MsoNormal"><b><span
style="font-size:9.0pt;color:#7F7F7F">................................................................................<o:p></o:p></span></b></p>
<p
style="mso-margin-top-alt:3.0pt;margin-right:0in;margin-bottom:3.0pt;margin-left:0in;mso-add-space:auto"
class="MsoNormalCxSpMiddle">
<b><span style="font-size:10.0pt;color:gray">Dipl.-Ing.
Christophe TREFOIS</span></b><span
style="font-size:9.0pt;color:#7F7F7F"><br>
</span><span style="font-size:9.0pt;color:gray">PhD
Student<o:p></o:p></span></p>
<p
style="mso-margin-top-alt:3.0pt;margin-right:0in;margin-bottom:3.0pt;margin-left:0in;mso-add-space:auto"
class="MsoNormalCxSpMiddle">
<i><span style="font-size:9.0pt;color:gray">Ing. Sys. Com.
Dipl. EPF<o:p></o:p></span></i></p>
<p
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<span style="font-size:9.0pt;color:gray"><br>
<img name="image.jpg" alt="Description:
cid:image001.jpg@01CACC35.07191DE0"
src="cid:part2.03030205.06050708@mrc-lmb.cam.ac.uk"
id="_x0000_i1028" height="38" width="37"><o:p></o:p></span></p>
<p
style="mso-margin-top-alt:3.0pt;margin-right:0in;margin-bottom:6.0pt;margin-left:0in"
class="MsoNormal">
<span style="font-size:9.0pt;color:gray">Luxembourg Centre
for Systems Biomedicine<o:p></o:p></span></p>
<p style="margin-bottom:3.0pt" class="MsoNormal"><span
style="font-size:8.0pt;color:gray">UNIVERSITY OF
LUXEMBOURG</span><span
style="font-size:10.0pt;color:gray"><br>
</span><span style="font-size:8.0pt;color:gray">CAMPUS
LIMPERTSBERG<br>
162a, avenue de la Faïencerie<br>
L-1511 Luxembourg<o:p></o:p></span></p>
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<span style="font-size:8.0pt;color:gray">T +352 46 66 44
6124<br>
F +352 46 66 44 6949<br>
</span><span style="color:#1F497D"><a
moz-do-not-send="true"
title="blocked::http://www.uni.lu/
http://www.uni.lu/" href="http://www.uni.lu/"><span
style="font-size:8.0pt;color:gray">www.lcsb.lu</span></a></span><span
style="font-size:8.0pt;color:#7F7F7F"><o:p></o:p></span></p>
</div>
<p class="MsoNormal"><span style="color:#1F497D"><o:p> </o:p></span></p>
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1.0pt;padding:3.0pt 0in 0in 0in">
<p class="MsoNormal"><b><span
style="font-size:10.0pt;font-family:"Tahoma","sans-serif";color:windowtext">From:</span></b><span
style="font-size:10.0pt;font-family:"Tahoma","sans-serif";color:windowtext">
<a class="moz-txt-link-abbreviated" href="mailto:ome-users-bounces@lists.openmicroscopy.org.uk">ome-users-bounces@lists.openmicroscopy.org.uk</a>
[<a class="moz-txt-link-freetext" href="mailto:ome-users-bounces@lists.openmicroscopy.org.uk">mailto:ome-users-bounces@lists.openmicroscopy.org.uk</a>]
<b>On Behalf Of </b>Gregory Jefferis<br>
<b>Sent:</b> Wednesday, July 20, 2011 9:57 AM<br>
<b>To:</b> <a class="moz-txt-link-abbreviated" href="mailto:ome-users@lists.openmicroscopy.org.uk">ome-users@lists.openmicroscopy.org.uk</a><br>
<b>Subject:</b> Re: [ome-users] Imaris <-> Omero<o:p></o:p></span></p>
</div>
</div>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Dear OME people,<br>
<br>
Although open source software is the target of my personal
development efforts, my lab still uses a mix of open and
commercial closed source software. In considering a
transition to an image database system like Omero one major
consideration is whether all of our software would be able
to get convenient access to image (meta)data. It was
recently pointed out to me that that the GPL license of the
ICE framework used by Omero is a problem for any closed
source application that wanted to talk to an Omero server
via ICE:<br>
<br>
<a moz-do-not-send="true"
href="http://zeroc.com/licensing.html">http://zeroc.com/licensing.html</a><br>
<br>
I presume this would include Imaris. Has anyone looked at
this issue in detail? Thoughts? Workarounds?<br>
<br>
Best wishes,<br>
<br>
Greg.<br>
<br>
<br>
<br>
<br>
<o:p></o:p></p>
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<td style="padding-top:4px;" valign="top"><img
src="cid:part3.06080505.05090006@mrc-lmb.cam.ac.uk"
photoaddress="jefferis@mrc-lmb.cam.ac.uk"
photoname="Gregory Jefferis" name="postbox-contact.jpg"
height="25px" width="25px"></td>
<td style="padding-left:5px;" valign="top"><a
moz-do-not-send="true"
href="mailto:jefferis@mrc-lmb.cam.ac.uk"
style="color:#2057EF !important;text-decoration:none
!important;">Gregory Jefferis</a><br>
<font color="#888888">20 July 2011 08:56</font></td>
</tr>
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Dear OME people,<br>
<br>
Although open source software is the target of my personal
development efforts, my lab still uses a mix of open and
commercial closed source software. In considering a transition
to an image database system like Omero one major consideration
is whether all of our software would be able to get convenient
access to image (meta)data. It was recently pointed out to me
that that the GPL license of the ICE framework used by Omero is
a problem for any closed source application that wanted to talk
to an Omero server via ICE:<br>
<br>
<a moz-do-not-send="true" href="http://zeroc.com/licensing.html"
class="moz-txt-link-freetext">http://zeroc.com/licensing.html</a><br>
<br>
I presume this would include Imaris. Has anyone looked at this
issue in detail? Thoughts? Workarounds?<br>
<br>
Best wishes,<br>
<br>
Greg.<br>
<br>
<br>
<br>
<br>
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<td style="padding-top:4px;" valign="top"><img
src="cid:part1.05070208.06010004@mrc-lmb.cam.ac.uk"
photoaddress="christophe.trefois@uni.lu"
photoname="Christophe TREFOIS"
name="compose-unknown-contact.jpg" height="25px"
width="25px"></td>
<td style="padding-left:5px;" valign="top"><a
moz-do-not-send="true"
href="mailto:christophe.trefois@uni.lu"
style="color:#2057EF !important;text-decoration:none
!important;">Christophe TREFOIS</a><br>
<font color="#888888">19 July 2011 09:00</font></td>
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<p class="MsoNormal">Dear Ome-users,<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Has anybody of you managed to interface
Imaris with Omero ?<o:p></o:p></p>
<p class="MsoNormal">I would like to import pictures for
automatic processing directly into Imaris.<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">For now, the only way I see is through
Imaris’s Matlab XT interface, but it seems rather tedious.<o:p></o:p></p>
<p class="MsoNormal">Since you’d need to go Omero -> Omero
Matlab -> Imaris XT -> Imaris.<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Any hints, tips, suggestions are welcome.<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Kind Regards,<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">--<o:p></o:p></p>
<p class="MsoNormal">Christophe<o:p></o:p></p>
<p class="MsoNormal"><b><span
style="font-size:9.0pt;color:#7F7F7F">................................................................................<o:p></o:p></span></b></p>
<p
style="mso-margin-top-alt:3.0pt;margin-right:0in;margin-bottom:3.0pt;margin-left:0in;mso-add-space:auto"
class="MsoNormalCxSpMiddle">
<b><span style="font-size:10.0pt;color:gray">Dipl.-Ing.
Christophe TREFOIS</span></b><span
style="font-size:9.0pt;color:#7F7F7F"><br>
</span><span style="font-size:9.0pt;color:gray">PhD Student<o:p></o:p></span></p>
<p
style="mso-margin-top-alt:3.0pt;margin-right:0in;margin-bottom:3.0pt;margin-left:0in;mso-add-space:auto"
class="MsoNormalCxSpMiddle">
<i><span style="font-size:9.0pt;color:gray">Ing. Sys. Com.
Dipl. EPF<o:p></o:p></span></i></p>
<p
style="mso-margin-top-alt:3.0pt;margin-right:0in;margin-bottom:3.0pt;margin-left:0in;mso-add-space:auto"
class="MsoNormalCxSpMiddle">
<span style="font-size:9.0pt;color:gray"><br>
<img name="image.jpg" moz-do-not-send="true"
alt="Description: cid:image001.jpg@01CACC35.07191DE0"
src="cid:part2.03030205.06050708@mrc-lmb.cam.ac.uk"
id="Picture_x0020_1" height="38" width="37"><o:p></o:p></span></p>
<p
style="mso-margin-top-alt:3.0pt;margin-right:0in;margin-bottom:6.0pt;margin-left:0in"
class="MsoNormal">
<span style="font-size:9.0pt;color:gray">Luxembourg Centre
for Systems Biomedicine<o:p></o:p></span></p>
<p style="margin-bottom:3.0pt" class="MsoNormal"><span
style="font-size:8.0pt;color:gray">UNIVERSITY OF
LUXEMBOURG</span><span style="font-size:10.0pt;color:gray"><br>
</span><span style="font-size:8.0pt;color:gray">CAMPUS
LIMPERTSBERG<br>
162a, avenue de la Faïencerie<br>
L-1511 Luxembourg<o:p></o:p></span></p>
<p
style="mso-margin-top-alt:3.0pt;margin-right:0in;margin-bottom:3.0pt;margin-left:0in"
class="MsoNormal">
<span style="font-size:8.0pt;color:gray">T +352 46 66 44
6124<br>
F +352 46 66 44 6949<br>
</span><a moz-do-not-send="true"
title="blocked::http://www.uni.lu/
http://www.uni.lu/" href="http://www.uni.lu/"><span
style="font-size:8.0pt;color:gray">www.lcsb.lu</span></a><span
style="font-size:8.0pt;color:#7F7F7F"><o:p></o:p></span></p>
<p class="MsoNormal"><o:p> </o:p></p>
</div>
<div>_______________________________________________<br>
ome-users mailing list<br>
<a class="moz-txt-link-abbreviated" href="mailto:ome-users@lists.openmicroscopy.org.uk">ome-users@lists.openmicroscopy.org.uk</a><br>
<a class="moz-txt-link-freetext" href="http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users">http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users</a><br>
</div>
</div>
</blockquote>
<br>
<div class="moz-signature">-- <br>
Gregory Jefferis, PhD
<a class="moz-txt-link-abbreviated" href="mailto:jefferis@mrc-lmb.cam.ac.uk">jefferis@mrc-lmb.cam.ac.uk</a><br>
Division of Neurobiology LMB Lab: +44 (0)1223
252943<br>
MRC Laboratory of Molecular Biology, LMB Office:+44 (0)1223
252944<br>
Hills Road, LMB Fax: +44 (0)1223
402310<br>
Cambridge, CB2 0QH, UK. <br>
<br>
<a class="moz-txt-link-freetext" href="http://www2.mrc-lmb.cam.ac.uk/group-leaders/h-to-m/g-jefferis">http://www2.mrc-lmb.cam.ac.uk/group-leaders/h-to-m/g-jefferis</a><br>
<a class="moz-txt-link-freetext" href="http://www.neuroscience.cam.ac.uk/directory/profile.php?gsxej2">http://www.neuroscience.cam.ac.uk/directory/profile.php?gsxej2</a><br>
<a class="moz-txt-link-freetext" href="http://flybrain.stanford.edu">http://flybrain.stanford.edu</a><br>
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