<html xmlns:v="urn:schemas-microsoft-com:vml" xmlns:o="urn:schemas-microsoft-com:office:office" xmlns:w="urn:schemas-microsoft-com:office:word" xmlns:m="http://schemas.microsoft.com/office/2004/12/omml" xmlns="http://www.w3.org/TR/REC-html40">
<head>
<meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1">
<meta name="Generator" content="Microsoft Word 14 (filtered medium)">
<!--[if !mso]><style>v\:* {behavior:url(#default#VML);}
o\:* {behavior:url(#default#VML);}
w\:* {behavior:url(#default#VML);}
.shape {behavior:url(#default#VML);}
</style><![endif]--><style><!--
/* Font Definitions */
@font-face
{font-family:Calibri;
panose-1:2 15 5 2 2 2 4 3 2 4;}
@font-face
{font-family:Tahoma;
panose-1:2 11 6 4 3 5 4 4 2 4;}
/* Style Definitions */
p.MsoNormal, li.MsoNormal, div.MsoNormal
{margin:0in;
margin-bottom:.0001pt;
font-size:11.0pt;
font-family:"Calibri","sans-serif";
color:black;}
a:link, span.MsoHyperlink
{mso-style-priority:99;
color:blue;
text-decoration:underline;}
a:visited, span.MsoHyperlinkFollowed
{mso-style-priority:99;
color:purple;
text-decoration:underline;}
p.MsoAcetate, li.MsoAcetate, div.MsoAcetate
{mso-style-priority:99;
mso-style-link:"Balloon Text Char";
margin:0in;
margin-bottom:.0001pt;
font-size:8.0pt;
font-family:"Tahoma","sans-serif";
color:black;}
span.BalloonTextChar
{mso-style-name:"Balloon Text Char";
mso-style-priority:99;
mso-style-link:"Balloon Text";
font-family:"Tahoma","sans-serif";}
span.EmailStyle19
{mso-style-type:personal;
font-family:"Calibri","sans-serif";
color:windowtext;}
span.EmailStyle20
{mso-style-type:personal-reply;
font-family:"Calibri","sans-serif";
color:#1F497D;}
.MsoChpDefault
{mso-style-type:export-only;
font-size:10.0pt;}
@page WordSection1
{size:8.5in 11.0in;
margin:1.0in 1.0in 1.0in 1.0in;}
div.WordSection1
{page:WordSection1;}
--></style><!--[if gte mso 9]><xml>
<o:shapedefaults v:ext="edit" spidmax="1026" />
</xml><![endif]--><!--[if gte mso 9]><xml>
<o:shapelayout v:ext="edit">
<o:idmap v:ext="edit" data="1" />
</o:shapelayout></xml><![endif]-->
</head>
<body bgcolor="white" lang="EN-US" link="blue" vlink="purple">
<div class="WordSection1">
<p class="MsoNormal"><span style="color:#1F497D">Dear Gregory,<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D">I’m not sure if this can be done, but in v 7.3 of Imaris, their API is now through ICE as well.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D">In that case, a direct communication could maybe occur?<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D">Best Regards,<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D">--<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D">Christophe<o:p></o:p></span></p>
<div>
<p class="MsoNormal"><b><span style="font-size:9.0pt;color:#7F7F7F">................................................................................<o:p></o:p></span></b></p>
<p class="MsoNormalCxSpMiddle" style="mso-margin-top-alt:3.0pt;margin-right:0in;margin-bottom:3.0pt;margin-left:0in;mso-add-space:auto">
<b><span style="font-size:10.0pt;color:gray">Dipl.-Ing. Christophe TREFOIS</span></b><span style="font-size:9.0pt;color:#7F7F7F"><br>
</span><span style="font-size:9.0pt;color:gray">PhD Student<o:p></o:p></span></p>
<p class="MsoNormalCxSpMiddle" style="mso-margin-top-alt:3.0pt;margin-right:0in;margin-bottom:3.0pt;margin-left:0in;mso-add-space:auto">
<i><span style="font-size:9.0pt;color:gray">Ing. Sys. Com. Dipl. EPF<o:p></o:p></span></i></p>
<p class="MsoNormalCxSpMiddle" style="mso-margin-top-alt:3.0pt;margin-right:0in;margin-bottom:3.0pt;margin-left:0in;mso-add-space:auto">
<span style="font-size:9.0pt;color:gray"><br>
<img width="37" height="38" id="_x0000_i1028" src="cid:image001.jpg@01CC46EA.D1C768E0" alt="Description: cid:image001.jpg@01CACC35.07191DE0"><o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:3.0pt;margin-right:0in;margin-bottom:6.0pt;margin-left:0in">
<span style="font-size:9.0pt;color:gray">Luxembourg Centre for Systems Biomedicine<o:p></o:p></span></p>
<p class="MsoNormal" style="margin-bottom:3.0pt"><span style="font-size:8.0pt;color:gray">UNIVERSITY OF LUXEMBOURG</span><span style="font-size:10.0pt;color:gray"><br>
</span><span style="font-size:8.0pt;color:gray">CAMPUS LIMPERTSBERG<br>
162a, avenue de la Faïencerie<br>
L-1511 Luxembourg<o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:3.0pt;margin-right:0in;margin-bottom:3.0pt;margin-left:0in">
<span style="font-size:8.0pt;color:gray">T +352 46 66 44 6124<br>
F +352 46 66 44 6949<br>
</span><span style="color:#1F497D"><a href="http://www.uni.lu/" title="blocked::http://www.uni.lu/
http://www.uni.lu/"><span style="font-size:8.0pt;color:gray">www.lcsb.lu</span></a></span><span style="font-size:8.0pt;color:#7F7F7F"><o:p></o:p></span></p>
</div>
<p class="MsoNormal"><span style="color:#1F497D"><o:p> </o:p></span></p>
<div>
<div style="border:none;border-top:solid #B5C4DF 1.0pt;padding:3.0pt 0in 0in 0in">
<p class="MsoNormal"><b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif";color:windowtext">From:</span></b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif";color:windowtext"> ome-users-bounces@lists.openmicroscopy.org.uk [mailto:ome-users-bounces@lists.openmicroscopy.org.uk]
<b>On Behalf Of </b>Gregory Jefferis<br>
<b>Sent:</b> Wednesday, July 20, 2011 9:57 AM<br>
<b>To:</b> ome-users@lists.openmicroscopy.org.uk<br>
<b>Subject:</b> Re: [ome-users] Imaris <-> Omero<o:p></o:p></span></p>
</div>
</div>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Dear OME people,<br>
<br>
Although open source software is the target of my personal development efforts, my lab still uses a mix of open and commercial closed source software. In considering a transition to an image database system like Omero one major consideration is whether all
of our software would be able to get convenient access to image (meta)data. It was recently pointed out to me that that the GPL license of the ICE framework used by Omero is a problem for any closed source application that wanted to talk to an Omero server
via ICE:<br>
<br>
<a href="http://zeroc.com/licensing.html">http://zeroc.com/licensing.html</a><br>
<br>
I presume this would include Imaris. Has anyone looked at this issue in detail? Thoughts? Workarounds?<br>
<br>
Best wishes,<br>
<br>
Greg.<br>
<br>
<br>
<br>
<br>
<o:p></o:p></p>
<div style="margin-left:30.0pt">
<div class="MsoNormal" align="center" style="text-align:center">
<hr size="1" width="100%" align="center">
</div>
<p class="MsoNormal"><o:p> </o:p></p>
</div>
<table class="MsoNormalTable" border="0" cellpadding="0">
<tbody>
<tr>
<td valign="top" style="padding:3.0pt .75pt .75pt .75pt">
<p class="MsoNormal"><img border="0" width="25" height="25" id="_x0000_i1026" src="cid:image002.jpg@01CC46EA.D1C768E0" name="compose-unknown-contact.jpg"><span style="font-size:12.0pt"><o:p></o:p></span></p>
</td>
<td valign="top" style="padding:3.75pt .75pt .75pt 3.75pt">
<p class="MsoNormal"><a href="mailto:christophe.trefois@uni.lu">Christophe TREFOIS</a><br>
<span style="color:#888888">19 July 2011 09:00</span><span style="font-size:12.0pt"><o:p></o:p></span></p>
</td>
</tr>
</tbody>
</table>
<div style="margin-left:30.0pt">
<p class="MsoNormal"><span style="color:#888888"><br>
<br>
</span><span style="font-size:12.0pt;font-family:"Times New Roman","serif";color:#888888"><o:p></o:p></span></p>
<p class="MsoNormal">Dear Ome-users,<o:p></o:p></p>
<p class="MsoNormal"> <o:p></o:p></p>
<p class="MsoNormal">Has anybody of you managed to interface Imaris with Omero ?<o:p></o:p></p>
<p class="MsoNormal">I would like to import pictures for automatic processing directly into Imaris.<o:p></o:p></p>
<p class="MsoNormal"> <o:p></o:p></p>
<p class="MsoNormal">For now, the only way I see is through Imaris’s Matlab XT interface, but it seems rather tedious.<o:p></o:p></p>
<p class="MsoNormal">Since you’d need to go Omero -> Omero Matlab -> Imaris XT -> Imaris.<o:p></o:p></p>
<p class="MsoNormal"> <o:p></o:p></p>
<p class="MsoNormal">Any hints, tips, suggestions are welcome.<o:p></o:p></p>
<p class="MsoNormal"> <o:p></o:p></p>
<p class="MsoNormal">Kind Regards,<o:p></o:p></p>
<p class="MsoNormal"> <o:p></o:p></p>
<p class="MsoNormal">--<o:p></o:p></p>
<p class="MsoNormal">Christophe<o:p></o:p></p>
<p class="MsoNormal"><b><span style="font-size:9.0pt;color:#7F7F7F">................................................................................</span></b><o:p></o:p></p>
<p class="MsoNormalCxSpMiddle" style="mso-margin-top-alt:3.0pt;margin-right:0in;margin-bottom:3.0pt;margin-left:0in;mso-add-space:auto">
<b><span style="font-size:10.0pt;color:gray">Dipl.-Ing. Christophe TREFOIS</span></b><span style="font-size:9.0pt;color:#7F7F7F"><br>
</span><span style="font-size:9.0pt;color:gray">PhD Student</span><o:p></o:p></p>
<p class="MsoNormalCxSpMiddle" style="mso-margin-top-alt:3.0pt;margin-right:0in;margin-bottom:3.0pt;margin-left:0in;mso-add-space:auto">
<i><span style="font-size:9.0pt;color:gray">Ing. Sys. Com. Dipl. EPF</span></i><o:p></o:p></p>
<p class="MsoNormalCxSpMiddle" style="mso-margin-top-alt:3.0pt;margin-right:0in;margin-bottom:3.0pt;margin-left:0in;mso-add-space:auto">
<span style="font-size:9.0pt;color:gray"><br>
<img border="0" width="37" height="38" id="Picture_x0020_1" src="cid:image003.jpg@01CC46EA.D1C768E0" alt="Description:
cid:image001.jpg@01CACC35.07191DE0" name="image.jpg"></span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:3.0pt;margin-right:0in;margin-bottom:6.0pt;margin-left:0in">
<span style="font-size:9.0pt;color:gray">Luxembourg Centre for Systems Biomedicine</span><o:p></o:p></p>
<p class="MsoNormal" style="margin-bottom:3.0pt"><span style="font-size:8.0pt;color:gray">UNIVERSITY OF LUXEMBOURG</span><span style="font-size:10.0pt;color:gray"><br>
</span><span style="font-size:8.0pt;color:gray">CAMPUS LIMPERTSBERG<br>
162a, avenue de la Faïencerie<br>
L-1511 Luxembourg</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:3.0pt;margin-right:0in;margin-bottom:3.0pt;margin-left:0in">
<span style="font-size:8.0pt;color:gray">T +352 46 66 44 6124<br>
F +352 46 66 44 6949<br>
</span><a href="http://www.uni.lu/" title="blocked::http://www.uni.lu/
http://www.uni.lu/"><span style="font-size:8.0pt;color:gray">www.lcsb.lu</span></a><o:p></o:p></p>
<p class="MsoNormal"> <o:p></o:p></p>
<div>
<p class="MsoNormal"><span style="font-size:12.0pt;font-family:"Times New Roman","serif";color:#888888">_______________________________________________<br>
ome-users mailing list<br>
<a href="mailto:ome-users@lists.openmicroscopy.org.uk">ome-users@lists.openmicroscopy.org.uk</a><br>
<a href="http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users">http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users</a><o:p></o:p></span></p>
</div>
</div>
<p class="MsoNormal"><span style="font-size:12.0pt;font-family:"Times New Roman","serif""><o:p> </o:p></span></p>
<div>
<p class="MsoNormal" style="margin-bottom:12.0pt"><span style="font-size:12.0pt;font-family:"Times New Roman","serif"">--
<br>
Gregory Jefferis, PhD <a href="mailto:jefferis@mrc-lmb.cam.ac.uk">
jefferis@mrc-lmb.cam.ac.uk</a><br>
Division of Neurobiology LMB Lab: +44 (0)1223 252943<br>
MRC Laboratory of Molecular Biology, LMB Office:+44 (0)1223 252944<br>
Hills Road, LMB Fax: +44 (0)1223 402310<br>
Cambridge, CB2 0QH, UK. <br>
<br>
<a href="http://www2.mrc-lmb.cam.ac.uk/group-leaders/h-to-m/g-jefferis">http://www2.mrc-lmb.cam.ac.uk/group-leaders/h-to-m/g-jefferis</a><br>
<a href="http://www.neuroscience.cam.ac.uk/directory/profile.php?gsxej2">http://www.neuroscience.cam.ac.uk/directory/profile.php?gsxej2</a><br>
<a href="http://flybrain.stanford.edu">http://flybrain.stanford.edu</a><o:p></o:p></span></p>
</div>
</div>
</body>
</html>