<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Hi Rajarshi-<div><br><div><div>On 26 Jun 2011, at 18:37, Rajarshi Guha wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><div>On Sun, Jun 26, 2011 at 10:36 AM, Jason Swedlow<br><<a href="mailto:jason@lifesci.dundee.ac.uk">jason@lifesci.dundee.ac.uk</a>> wrote:<br><blockquote type="cite">How long to install OMERO? With a vanilla install of Ubuntu 10.04, I<br></blockquote><blockquote type="cite">followed the instructions at<br></blockquote><blockquote type="cite"><a href="http://www.openmicroscopy.org/community/viewtopic.php?f=5&t=665">http://www.openmicroscopy.org/community/viewtopic.php?f=5&t=665</a><br></blockquote><blockquote type="cite">and was up and running in about 25 mins. The bulk of the work is getting<br></blockquote><blockquote type="cite">the system integrated into your own environment, especially with the tools<br></blockquote><blockquote type="cite">that your scientists use for image analysis and processing.<br></blockquote><br>On a related note, to what extent have people had experience with<br>integrating vendor (proprietrary) software with an OMERO<br>infrastructure? I see a number of threads where people have plugged<br>in their own custom code. In our case for example, we use MetaXpress -<br>but currently this has to remain a standalone system since, as far as<br>I can tell, there is no way for it to work with OMERO.<br></div></blockquote><div><br></div><div>This is a question for the commercial vendors. Many now output OME-TIFF, so that's a start. You are asking them to adapt their software to the OMERO API:</div><div><br></div><div><a href="http://trac.openmicroscopy.org.uk/ome/wiki/OmeroApi">http://trac.openmicroscopy.org.uk/ome/wiki/OmeroApi</a></div><div><br></div><br><blockquote type="cite"><div><br>While we have other platforms (Incell etc) that could make use of<br>OMERO and could write our own image analysis code, we also have vendor<br>s/w that we'd like to run - but as far as I can tell won't work<br>directly with OMERO.<br></div></blockquote><blockquote type="cite"><div><br>I know that the Columbus system is one such example. Are there any<br>other commericial systems that will work with OMERO? Has anybody had<br>luck with working with a vendor customizing their s/w to work with<br>OMERO?<br></div></blockquote><div><br></div><div>Applied Precision also has a product called DMS, which is a data management application built on OMERO Beta 2.3. We'd love to hear about any others. and certainly happy to support any efforts in this direction. </div><div><br></div><div>Cheers,</div><div><br></div><div>Jason</div><div><br></div></div><div><span class="Apple-style-span" style="font-size: 12px; "><div style="font-family: Helvetica; "><br class="khtml-block-placeholder"></div><div style="font-family: Helvetica; "><span class="Apple-style-span" style="font-family: Helvetica; ">**************************</span></div><div style="font-family: Helvetica; "><font class="Apple-style-span" face="Arial">Wellcome Trust Centre for Gene Regulation & Expression</font></div><div style="font-family: Helvetica; "><font class="Apple-style-span" face="Arial">College of Life Sciences</font></div><div style="font-family: Helvetica; "><font class="Apple-style-span" face="Arial">MSI/WTB/JBC Complex</font></div><div style="font-family: Helvetica; "><span class="Apple-style-span" style="font-family: Helvetica; ">University of Dundee</span></div><div style="font-family: Helvetica; "><span class="Apple-style-span" style="font-family: Helvetica; ">Dow Street</span></div><div style="font-family: Helvetica; "><span class="Apple-style-span" style="font-family: Helvetica; ">Dundee DD1 5EH</span></div><div style="font-family: Helvetica; "><span class="Apple-style-span" style="font-family: Helvetica; ">United Kingdom</span></div><div style="font-family: Helvetica; "><br style="font-family: Helvetica; "></div><div style="font-family: Helvetica; "><span class="Apple-style-span" style="font-family: Helvetica; ">phone (01382) 385819</span></div><div style="font-family: Helvetica; "><span class="Apple-style-span" style="font-family: Helvetica; ">Intl phone: 44 1382 385819 </span></div><div style="font-family: Helvetica; "><span class="Apple-style-span" style="font-family: Helvetica; ">FAX (01382) 388072 </span></div><div style="font-family: Helvetica; "><span class="Apple-style-span" style="font-family: Helvetica; ">email: <a href="mailto:jason@lifesci.dundee.ac.uk">jason@lifesci.dundee.ac.uk</a></span></div><div style="font-family: Helvetica; "><br style="font-family: Helvetica; "></div><div style="font-family: Helvetica; "><span class="Apple-style-span" style="font-family: Helvetica; ">Lab Page: <a href="http://gre.lifesci.dundee.ac.uk/staff/jason_swedlow.html">http://gre.lifesci.dundee.ac.uk/staff/jason_swedlow.html</a></span></div><div style="font-family: Helvetica; "><span class="Apple-style-span" style="font-family: Helvetica; ">Open Microscopy Environment: <a href="http://openmicroscopy.org">http://openmicroscopy.org</a></span></div><div style="font-family: Helvetica; "><span class="Apple-style-span" style="font-family: Helvetica; ">**************************</span></div><div style="font-family: Helvetica; "><br class="webkit-block-placeholder"></div><div style="font-family: Helvetica; "><div>The University of Dundee is a Scottish Registered Charity, No. SC015096.</div></div><br class="Apple-interchange-newline"></span><br class="Apple-interchange-newline">
</div>
<br></div></body></html>