<html><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Hi Chris,<div><br></div><div> Sorry - thought I'd replied to this earlier but sent it to the wrong list....</div><div><div><br></div><div>The Combine Images script should almost do what you want.</div><div>Have a look at <a href="http://www.openmicroscopy.org/site/support/omero4/getting-started/tutorial/running-scripts/running-util-scripts">http://www.openmicroscopy.org/site/support/omero4/getting-started/tutorial/running-scripts/running-util-scripts</a> </div><div>and the video demo</div><div><a href="http://cvs.openmicroscopy.org.uk/snapshots/movies/omero-4-3/mov/Combine_Images.mov">http://cvs.openmicroscopy.org.uk/snapshots/movies/omero-4-3/mov/Combine_Images.mov</a></div><div><br></div><div>Although this script was originally designed for combining individual planes, it has been updated (for the approaching 4.3 release) to handle Z-stacks.</div><div><br></div><div>If you have each channel as a separate Z-stack then it should do what you want. </div><div>But it should be very straight forward to fix it to stitch multi-channel Z-stacks into a time-lapse too, if that's what you need?</div><div><br></div><div> Cheers,</div><div><br></div><div> Will. </div><div><br></div><div><br></div><div><br></div><div><div>On 28 May 2011, at 04:15, Wood, Christopher wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><div>Part of the same 5D image.<br><br>Chris<br>________________________________________<br>From: Jason Swedlow [<a href="mailto:jason@lifesci.dundee.ac.uk">jason@lifesci.dundee.ac.uk</a>]<br>Sent: Friday, May 27, 2011 5:10 PM<br>To: Wood, Christopher; <a href="mailto:ome-users@lists.openmicroscopy.org.uk">ome-users@lists.openmicroscopy.org.uk</a><br>Subject: Re: [ome-users] lot of files - one image<br><br>Hi Chris-<br><br>Just to clarify--<br><br>Are the 500 images (in your example) part of the same 5D image? That is, are the samples across Z, C, T etc.? Or are they, say of different cells, different experiments, etc.<br><br>Thanks!<br><br>Cheers,<br><br>Jason<br><br>Wellcome Trust Centre for Gene Regulation & Expression | University of Dundee | <a href="http://gre.lifesci.dundee.ac.uk/staff/jason_swedlow.html">http://gre.lifesci.dundee.ac.uk/staff/jason_swedlow.html</a><br><br>-----Original Message-----<br>From: "Wood, Christopher" <<a href="mailto:CJW@stowers.org">CJW@stowers.org</a>><br>Sender: <a href="mailto:ome-users-bounces@lists.openmicroscopy.org.uk">ome-users-bounces@lists.openmicroscopy.org.uk</a><br>Date: Fri, 27 May 2011 15:26:04<br>To: <a href="mailto:ome-users@lists.openmicroscopy.org.uk">ome-users@lists.openmicroscopy.org.uk</a><<a href="mailto:ome-users@lists.openmicroscopy.org.uk">ome-users@lists.openmicroscopy.org.uk</a>><br>Subject: [ome-users] lot of files - one image<br><br>_______________________________________________<br>ome-users mailing list<br><a href="mailto:ome-users@lists.openmicroscopy.org.uk">ome-users@lists.openmicroscopy.org.uk</a><br>http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users<br><br><br>_______________________________________________<br>ome-users mailing list<br>ome-users@lists.openmicroscopy.org.uk<br>http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users<br></div></blockquote></div><br><div apple-content-edited="true"> <span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: medium; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: medium; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: medium; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: medium; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div><div>William Moore</div><div><div>Wellcome Trust Centre for Gene Regulation & Expression</div><div>College of Life Sciences</div><div>MSI/WTB/JBC Complex</div><div>University of Dundee</div><div>Dow Street</div><div>Dundee DD1 5EH</div><div>United Kingdom</div><div><br></div><div>Phone 01382 386364</div></div><div><a href="http://openmicroscopy.org">http://openmicroscopy.org</a></div></div></div></span><br class="Apple-interchange-newline"></div></span><br class="Apple-interchange-newline"></div></span><br class="Apple-interchange-newline"></div></span><br class="Apple-interchange-newline"> </div><br></div></body></html>