<meta charset="utf-8"><span class="Apple-style-span" style="border-collapse: collapse; font-family: arial, sans-serif; font-size: 13px; ">Thanks to Josh <span class="il" style="background-image: initial; background-attachment: initial; background-origin: initial; background-clip: initial; background-color: rgb(255, 242, 230); color: rgb(34, 34, 34); background-position: initial initial; background-repeat: initial initial; ">for</span> sending this out, I guess I'll chime <span class="il" style="background-image: initial; background-attachment: initial; background-origin: initial; background-clip: initial; background-color: rgb(255, 242, 230); color: rgb(34, 34, 34); background-position: initial initial; background-repeat: initial initial; ">in</span> briefly.<div>

<br></div><div>First of all, this is a great opportunity <span class="il" style="background-image: initial; background-attachment: initial; background-origin: initial; background-clip: initial; background-color: rgb(255, 242, 230); color: rgb(34, 34, 34); background-position: initial initial; background-repeat: initial initial; ">for</span> people who:</div>

<div><ul><li style="margin-left: 15px; ">are using OMERO to organize and access your HCS data, and you would like an easier way to get your data into <span class="il" style="background-image: initial; background-attachment: initial; background-origin: initial; background-clip: initial; background-color: rgb(255, 242, 230); color: rgb(34, 34, 34); background-position: initial initial; background-repeat: initial initial; ">CellProfiler</span> 2.0 <span class="il" style="background-image: initial; background-attachment: initial; background-origin: initial; background-clip: initial; background-color: rgb(255, 242, 230); color: rgb(34, 34, 34); background-position: initial initial; background-repeat: initial initial; ">for</span> analysis.</li>

<li style="margin-left: 15px; ">are using <span class="il" style="background-image: initial; background-attachment: initial; background-origin: initial; background-clip: initial; background-color: rgb(255, 242, 230); color: rgb(34, 34, 34); background-position: initial initial; background-repeat: initial initial; ">CellProfiler</span> <span class="il" style="background-image: initial; background-attachment: initial; background-origin: initial; background-clip: initial; background-color: rgb(255, 242, 230); color: rgb(34, 34, 34); background-position: initial initial; background-repeat: initial initial; ">for</span> HCS image analysis and you'd benefit from a centralized data repository <span class="il" style="background-image: initial; background-attachment: initial; background-origin: initial; background-clip: initial; background-color: rgb(255, 242, 230); color: rgb(34, 34, 34); background-position: initial initial; background-repeat: initial initial; ">with</span> easy-to-use tools <span class="il" style="background-image: initial; background-attachment: initial; background-origin: initial; background-clip: initial; background-color: rgb(255, 242, 230); color: rgb(34, 34, 34); background-position: initial initial; background-repeat: initial initial; ">for</span> browsing and annotating your data.</li>

</ul></div><div><div>I've been a software engineer working <span class="il" style="background-image: initial; background-attachment: initial; background-origin: initial; background-clip: initial; background-color: rgb(255, 242, 230); color: rgb(34, 34, 34); background-position: initial initial; background-repeat: initial initial; ">in</span> <a href="http://www.broadinstitute.org/~anne/people.html" target="_blank" style="color: rgb(64, 100, 128); ">Anne Carpenter's group</a> at the Broad Institute <span class="il" style="background-image: initial; background-attachment: initial; background-origin: initial; background-clip: initial; background-color: rgb(255, 242, 230); color: rgb(34, 34, 34); background-position: initial initial; background-repeat: initial initial; ">in</span> Cambridge, MA <span class="il" style="background-image: initial; background-attachment: initial; background-origin: initial; background-clip: initial; background-color: rgb(255, 242, 230); color: rgb(34, 34, 34); background-position: initial initial; background-repeat: initial initial; ">for</span> the past 3 years. I'm currently working to bridge the gap between OMERO and our current version of <a href="http://cellprofiler.org/" target="_blank" style="color: rgb(64, 100, 128); "><span class="il" style="background-image: initial; background-attachment: initial; background-origin: initial; background-clip: initial; background-color: rgb(255, 242, 230); color: rgb(34, 34, 34); background-position: initial initial; background-repeat: initial initial; ">CellProfiler</span></a>, but unfortunately I have yet to find anyone who is using both tools or at least would like to. If this is something that interests you (anyone!), I'd love to hear your thoughts and ideas.</div>

<div><br></div><div>I'm currently getting started by porting the existing OMERO CP <a href="http://trac.openmicroscopy.org.uk/omero/wiki/OmeroCellProfiler" target="_blank" style="color: rgb(64, 100, 128); ">modules</a> from CP1.0 to CP2.0. I've gotten the impression that this is something useful that people have been meaning to do, but once again, I'd love to hear from people <span class="il" style="background-image: initial; background-attachment: initial; background-origin: initial; background-clip: initial; background-color: rgb(255, 242, 230); color: rgb(34, 34, 34); background-position: initial initial; background-repeat: initial initial; ">with</span> real use cases.</div>

<div><br></div><div>Thanks,</div><div>Adam Fraser</div></div></span><br><div class="gmail_quote">On Fri, Feb 4, 2011 at 4:23 AM, Josh Moore <span dir="ltr"><<a href="mailto:josh@glencoesoftware.com">josh@glencoesoftware.com</a>></span> wrote:<br>

<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;">Hi list,<br>
<br>
Adam Fraser from Broad Institue (CC'd) has started investigating the interface between CellProfiler / CellProfiler Analyst 2.0 and OMERO. We are certainly willing (and hopefully able!) to help him on the technical side of the integration, but were wondering if anyone could make suggestions on how to most quickly and effectively bring CP & CPA into a real OMERO user's workflow. "How is your data laid out?", "How has it been tagged & classified?", "How do you want to visualize and interact with your results?", "How should results be stored?" are among the questions which it might be good to have answers to. If you have time and are interested, either contact Adam directly or email the list.<br>


<br>
As always, thanks for your support.<br>
<font color="#888888">~Josh</font></blockquote></div><br>