<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Hi,<div><br></div><div>I think the easiest solution at the moment would be to export the data you want as TIFF or OME-TIFF (the plain TIFF from Volocity includes metadata that I believe Bioformats can read). You can export multiple datasets from Volocity in one go by selecting them all and choosing File -> Export...</div><div><br></div><div>The Volocity library format isn't so easy to share unfortunately - much of it is streamed C++ objects and plain binary image data, and sadly we never really designed it with reading by third parties in mind. </div><div><br></div><div>Melissa - I do have some thoughts on how we might be able to add some "niceness" in the .mvd2 file (which is a Metakit database) to make it easier to interpret everything else, or create a reader SDK if there is strong demand from the community. Please feel free to contact me if you would like a chat about this.</div><div><br></div><div>Cheers,</div><div><br></div><div>Steve</div><div><br><div><div>On 9 Dec 2010, at 15:38, Melissa Linkert wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite">
<div>
<!-- Converted from text/plain format --><p><font size="2">Hi Alex,<br>
<br>
We are planning to add support for Volocity database files in Bio-Formats in<br>
the not-too-distant future. For further information, please see this ticket on<br>
our issue tracking system:<br>
<br>
<a href="http://dev.loci.wisc.edu/trac/software/ticket/55">http://dev.loci.wisc.edu/trac/software/ticket/55</a><br>
<br>
If you would like to be automatically notified whenever we update that<br>
ticket, just let me know and I will happily CC you.<br>
<br>
Regards,<br>
-Melissa<br>
<br>
On Thu, Dec 09, 2010 at 03:29:59PM +0000, Alexander Tournier wrote:<br>
> Hi,<br>
><br>
> we are currently testing OMERO for deployment at Cancer Research UK<br>
> in London.<br>
> One of the file formats we use regularly is Volocity (currently 5.3)<br>
> coming out of Perkin-Elmer spinning disk microscopes.<br>
> The current bioformats don't seem to be able to handle Volocity<br>
> files/databases.<br>
><br>
> Anybody knows how to handle Volocity formats for import into OMERO?<br>
> Are there plans for these formats to be supported by bioformats?<br>
><br>
> Thanks,<br>
> Alex<br>
><br>
><br>
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