-bash-3.2$ psql -v ON_ERROR_STOP=1 --pset pager=off -h localhost -U omero -f OME
RO4.1__0.sql  omero > upgrade2.log
psql:OMERO4.1__0.sql:542: ERROR:
Different groups: Dataset(id=9, group=2, owner=2, perms=rw----) <--> DatasetImag
eLink.parent(id=1202, group=4, owner=2, perms=rw----)
Different groups: Dataset(id=9, group=2, owner=2, perms=rw----) <--> DatasetImag
eLink.parent(id=1201, group=4, owner=2, perms=rw----)
Different groups: Dataset(id=9, group=2, owner=2, perms=rw----) <--> DatasetImag
eLink.parent(id=53, group=4, owner=2, perms=rw----)
Different groups: Dataset(id=1, group=2, owner=2, perms=rw----) <--> DatasetImag
eLink.parent(id=1196, group=4, owner=2, perms=rw----)
Different groups: Dataset(id=2, group=2, owner=2, perms=rw----) <--> DatasetAnno
tationLink.parent(id=182, group=4, owner=2, perms=rw----)
Different groups: Dataset(id=2, group=2, owner=2, perms=rw----) <--> DatasetAnno
tationLink.parent(id=181, group=4, owner=2, perms=rw----)
Different groups: Dataset(id=2, group=2, owner=2, perms=rw----) <--> DatasetAnno
tationLink.parent(id=180, group=4, owner=2, perms=rw----)
Different groups: Dataset(id=2, group=2, owner=2, perms=rw----) <--> DatasetAnno
tationLink.parent(id=179, group=4, owner=2, perms=rw----)
Different groups: Dataset(id=2, group=2, owner=2, perms=rw----) <--> DatasetAnno
tationLink.parent(id=178, group=4, owner=2, perms=rw----)
Different groups: Dataset(id=2, group=2, owner=2, perms=rw----) <--> DatasetAnno
tationLink.parent(id=2, group=4, owner=2, perms=rw----)
Different groups: Dataset(id=7, group=2, owner=2, perms=rw----) <--> DatasetAnno
tationLink.parent(id=184, group=4, owner=2, perms=rw----)
Different groups: Dataset(id=7, group=2, owner=2, perms=rw----) <--> DatasetAnno
tationLink.parent(id=183, group=4, owner=2, perms=rw----)
Different groups: Image(id=82, group=2, owner=2, perms=rw----) <--> ImageAnnotat
ionLink.parent(id=520, group=4, owner=2, perms=rw----)
Different groups: Image(id=48, group=2, owner=2, perms=rw----) <--> ImageAnnotat
ionLink.parent(id=200, group=4, owner=2, perms=rw----)
Different groups: Image(id=49, group=2, owner=2, perms=rw----) <--> ImageAnnotat
ionLink.parent(id=1048, group=4, owner=2, perms=rw----)
Different groups: Image(id=49, group=2, owner=2, perms=rw----) <--> ImageAnnotat
ionLink.parent(id=3903, group=4, owner=2, perms=rw----)
Different groups: Image(id=49, group=2, owner=2, perms=rw----) <--> ImageAnnotat
ionLink.parent(id=3902, group=4, owner=2, perms=rw----)
Different groups: Image(id=49, group=2, owner=2, perms=rw----) <--> ImageAnnotat
ionLink.parent(id=1809, group=4, owner=2, perms=rw----)
Different groups: Image(id=50, group=2, owner=2, perms=rw----) <--> ImageAnnotat
ionLink.parent(id=169, group=4, owner=2, perms=rw----)
Different groups: Image(id=51, group=2, owner=2, perms=rw----) <--> ImageAnnotat
ionLink.parent(id=170, group=4, owner=2, perms=rw----)
Different groups: Image(id=52, group=2, owner=2, perms=rw----) <--> ImageAnnotat
ionLink.parent(id=177, group=4, owner=2, perms=rw----)
Different groups: Image(id=52, group=2, owner=2, perms=rw----) <--> ImageAnnotat
ionLink.parent(id=176, group=4, owner=2, perms=rw----)
Different groups: Image(id=52, group=2, owner=2, perms=rw----) <--> ImageAnnotat
ionLink.parent(id=175, group=4, owner=2, perms=rw----)
Different groups: Image(id=52, group=2, owner=2, perms=rw----) <--> ImageAnnotat
ionLink.parent(id=174, group=4, owner=2, perms=rw----)
Different groups: Project(id=1, group=2, owner=2, perms=rw----) <--> ProjectAnno
tationLink.parent(id=140, group=4, owner=2, perms=rw----)
Different groups: Project(id=1, group=2, owner=2, perms=rw----) <--> ProjectAnno
tationLink.parent(id=139, group=4, owner=2, perms=rw----)
Different groups: Project(id=1, group=2, owner=2, perms=rw----) <--> ProjectAnno
tationLink.parent(id=138, group=4, owner=2, perms=rw----)
Different groups: Project(id=1, group=2, owner=2, perms=rw----) <--> ProjectAnno
tationLink.parent(id=2, group=4, owner=2, perms=rw----)
Different groups: Project(id=1, group=2, owner=2, perms=rw----) <--> ProjectData
setLink.parent(id=351, group=4, owner=2, perms=rw----)

ERROR ON omero_41_check:
Your database has data which is incompatible with 4.2 and will need to be manual
ly updated
Contact ome-users@lists.openmicroscopy.org.uk for help adjusting your data.