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<div><font size="2">Hello folks,</font></div>
<div><font size="2"> </font></div>
<div><font size="2">I have successfully installed OMERO on my MacBook and on my Red hat Linux desktop. I'm now trying to install OMERO on our Mac server, which is the host machine we plan to use for the medium/long term. </font></div>
<div><font size="2"> </font></div>
<div><font size="2">Our Mac server just got upgraded to Mac OS X Server 10.6, so I was using Ken's OMERO for 10.6 install instructions as my template. I copied over the appropriate subdirectories from /Library and /Library/Frameworks on my MacBook, and then
made the additional changes that appeared to be required in Ken's instructions (for example, a couple Python libs that still had to be re-installed from source since they don't have separate subdirectories).</font></div>
<div><font size="2"> </font></div>
<div><font size="2">I also set the firewall using Server --> Server Preferences --> Security --> Firewall</font></div>
<div><font size="2"> to have open ports at 8000 (for OMERO.web) and at 5433 (the port I'm using for Postgres).</font></div>
<div><font size="2"> </font></div>
<div><font size="2">I then invoked Postgres. It comes up fine. I then tried invoking OMERO using</font></div>
<div><font size="2"> omero admin start</font></div>
<div><font size="2"> </font></div>
<div><font size="2">That fails - it times out after 5 minutes.</font></div>
<div><font size="2"> </font></div>
<div><font size="2">So - need help again.</font></div>
<div><font size="2"> </font></div>
<div><font size="2">I have attached a record* file that contains the screen output of the failed start, including the results of</font></div>
<div><font size="2"> omero admin diagnostics (which I have also repeated at bottom)</font></div>
<div><font size="2"> </font></div>
<div><font size="2">I have also attached all the log files in</font></div>
<div><font size="2"> ../omero_dist/var/log</font></div>
<div><font size="2"> except for the master.out file, which remained empty.</font></div>
<div><font size="2"> </font></div>
<div><font size="2">And I have attached my .bash_profile file for the account (/Users/rontaylor) in which I started Postgres and attempted to start OMERO.</font></div>
<div><font size="2"> </font></div>
<div><font size="2">The Blitz-0 log shows a SQL error msg which I have not seen before. Could that have anything to do with a blocked port to Postgres at the router/intranet level, something I should check out with our network people?</font></div>
<div><font size="2"> </font></div>
<div><font size="2">As before, any help would be greatly appreciated.</font></div>
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<div><font face="Arial, sans-serif" size="2" color="#D47500">___________________________________________</font></div>
<div><font face="Verdana, sans-serif" size="2">Ronald Taylor, Ph.D.</font></div>
<div><font face="Verdana, sans-serif" size="2">Computational Biology & Bioinformatics Group</font></div>
<div><font face="Verdana, sans-serif" size="2">Pacific Northwest National Laboratory</font></div>
<div><font face="Verdana, sans-serif" size="2">902 Battelle Boulevard</font></div>
<div><font face="Verdana, sans-serif" size="2">P.O. Box 999, Mail Stop J4-33</font></div>
<div><font face="Verdana, sans-serif" size="2">Richland, WA 99352 USA</font></div>
<div><font face="Verdana, sans-serif" size="2">Office: 509-372-6568</font></div>
<div><font face="Verdana, sans-serif" size="2">Email: ronald.taylor@pnl.gov</font></div>
<div><font face="Verdana, sans-serif" size="2"> </font></div>
<div><font face="Verdana, sans-serif" size="2"> </font></div>
<div><font face="Verdana, sans-serif" size="2"> </font></div>
<div><font face="Verdana, sans-serif" size="2">%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%</font></div>
<div><font face="Verdana, sans-serif" size="2"> </font></div>
<div><font face="Verdana, sans-serif" size="2">Screen output:</font></div>
<div><font face="Verdana, sans-serif" size="2"> </font></div>
<div><font face="Verdana, sans-serif" size="2">bash-3.2$ cd /Volumes/Server HD 2/Sid</font></div>
<div><font face="Verdana, sans-serif" size="2"> </font></div>
<div><font face="Verdana, sans-serif" size="2">bash-3.2$ pg_ctl start -D /Postgres/Data -l /Postgres/Logs/logfile -o -i</font></div>
<div><font face="Verdana, sans-serif" size="2">server starting</font></div>
<div><font face="Verdana, sans-serif" size="2"> </font></div>
<div><font face="Verdana, sans-serif" size="2"> </font></div>
<div><font face="Verdana, sans-serif" size="2">bash-3.2$ pg_ctl status</font></div>
<div><font face="Verdana, sans-serif" size="2">pg_ctl: server is running (PID: 98152)</font></div>
<div><font face="Verdana, sans-serif" size="2">/Postgres/bin/postgres "-D" "/Postgres/Data" "-i"</font></div>
<div><font face="Verdana, sans-serif" size="2">bash-3.2$ </font></div>
<div><font face="Verdana, sans-serif" size="2"> </font></div>
<div><font face="Verdana, sans-serif" size="2">bash-3.2$ omero admin start</font></div>
<div><font face="Verdana, sans-serif" size="2">No descriptor given. Using etc/grid/default.xml</font></div>
<div><font face="Verdana, sans-serif" size="2">Waiting on startup. Use CTRL-C to exit</font></div>
<div><font face="Verdana, sans-serif" size="2">.............................Failed to startup after 5 minutes</font></div>
<div><font face="Verdana, sans-serif" size="2">bash-3.2$ </font></div>
<div><font face="Verdana, sans-serif" size="2"> </font></div>
<div><font face="Verdana, sans-serif" size="2"> </font></div>
<div><font face="Verdana, sans-serif" size="2">bash-3.2$ </font></div>
<div><font face="Verdana, sans-serif" size="2">bash-3.2$ omero admin diagnostics</font></div>
<div><font face="Verdana, sans-serif" size="2"> </font></div>
<div><font face="Verdana, sans-serif" size="2">================================================================================</font></div>
<div><font face="Verdana, sans-serif" size="2">OMERO Diagnostics Beta-4.1.1-r5927-b91</font></div>
<div><font face="Verdana, sans-serif" size="2">================================================================================</font></div>
<div><font face="Verdana, sans-serif" size="2"> </font></div>
<div><font face="Verdana, sans-serif" size="2">Commands: java -version 2010 (/usr/bin/java -- 2 others)</font></div>
<div><font face="Verdana, sans-serif" size="2">Commands: python -V 2.6.1 (/usr/bin/python)</font></div>
<div><font face="Verdana, sans-serif" size="2">Commands: icegridnode --version 3.3.1 (/Library/Ice/Versions/3.3.1/bin/icegridnode)</font></div>
<div><font face="Verdana, sans-serif" size="2">Commands: icegridadmin --version 3.3.1 (/Library/Ice/Versions/3.3.1/bin/icegridadmin)</font></div>
<div><font face="Verdana, sans-serif" size="2">Commands: psql --version 8.3.11 (/Postgres/bin/psql)</font></div>
<div><font face="Verdana, sans-serif" size="2"> </font></div>
<div><font face="Verdana, sans-serif" size="2">Server: icegridnode running</font></div>
<div><font face="Verdana, sans-serif" size="2">Server: Blitz-0 inactive (disabled)</font></div>
<div><font face="Verdana, sans-serif" size="2">Server: DropBox inactive (disabled)</font></div>
<div><font face="Verdana, sans-serif" size="2">Server: FSServer active (pid = 98199, enabled)</font></div>
<div><font face="Verdana, sans-serif" size="2">Server: Indexer-0 inactive (disabled)</font></div>
<div><font face="Verdana, sans-serif" size="2">Server: OMERO.Glacier2 active (pid = 98201, enabled)</font></div>
<div><font face="Verdana, sans-serif" size="2">Server: OMERO.IceStorm active (pid = 98202, enabled)</font></div>
<div><font face="Verdana, sans-serif" size="2">Server: Processor-0 activating (enabled)</font></div>
<div><font face="Verdana, sans-serif" size="2">Server: Tables-0 activating (enabled)</font></div>
<div><font face="Verdana, sans-serif" size="2">Server: TestDropBox inactive (enabled)</font></div>
<div><font face="Verdana, sans-serif" size="2">Server: Web inactive (enabled)</font></div>
<div><font face="Verdana, sans-serif" size="2"> </font></div>
<div><font face="Verdana, sans-serif" size="2">Log dir: /Library/Omero/Versions/4.1.1/omero_dist/var/log exists</font></div>
<div><font face="Verdana, sans-serif" size="2"> </font></div>
<div><font face="Verdana, sans-serif" size="2">Log files: Blitz-0.log 44.0 KB errors=2 warnings=3</font></div>
<div><font face="Verdana, sans-serif" size="2">Log files: DropBox.log 1.0 KB errors=2 warnings=1</font></div>
<div><font face="Verdana, sans-serif" size="2">Log files: FSServer.log 0.0 KB</font></div>
<div><font face="Verdana, sans-serif" size="2">Log files: Indexer-0.log 38.0 KB errors=2 warnings=3</font></div>
<div><font face="Verdana, sans-serif" size="2">Log files: OMEROweb.log n/a</font></div>
<div><font face="Verdana, sans-serif" size="2">Log files: Processor-0.log 30.0 KB errors=8 warnings=56</font></div>
<div><font face="Verdana, sans-serif" size="2">Log files: Tables-0.log 30.0 KB errors=8 warnings=56</font></div>
<div><font face="Verdana, sans-serif" size="2">Log files: TestDropBox.log n/a</font></div>
<div><font face="Verdana, sans-serif" size="2">Log files: master.err 1.0 KB</font></div>
<div><font face="Verdana, sans-serif" size="2">Log files: master.out 0.0 KB</font></div>
<div><font face="Verdana, sans-serif" size="2">Log files: Total size 0.15 MB</font></div>
<div><font face="Verdana, sans-serif" size="2">bash-3.2$ </font></div>
<div><font face="Verdana, sans-serif" size="2"> </font></div>
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