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<DIV dir=ltr align=left><SPAN class=036503101-26052010><FONT color=#0000ff
size=2 face=Arial>Hello Ola,</FONT></SPAN></DIV>
<DIV dir=ltr align=left><SPAN class=036503101-26052010><FONT color=#0000ff
size=2 face=Arial></FONT></SPAN> </DIV>
<DIV dir=ltr align=left><SPAN class=036503101-26052010><FONT color=#0000ff
size=2 face=Arial>I have (finally) tried what you suggested after being
away from the install for several days. That is, I did this:</FONT></SPAN></DIV>
<DIV dir=ltr align=left><SPAN class=036503101-26052010><FONT color=#0000ff
size=2 face=Arial></FONT></SPAN> </DIV>
<DIV dir=ltr align=left><SPAN class=036503101-26052010><FONT color=#0000ff
size=2 face=Arial>1) I altered the </FONT></SPAN></DIV>
<DIV dir=ltr align=left><SPAN class=036503101-26052010><FONT color=#0000ff
size=2 face=Arial> templates.xml
file</FONT></SPAN></DIV>
<DIV dir=ltr align=left><SPAN class=036503101-26052010><FONT color=#0000ff
size=2 face=Arial></FONT></SPAN> </DIV>
<DIV dir=ltr align=left><SPAN class=036503101-26052010><FONT color=#0000ff
size=2 face=Arial>by adding the line</FONT></SPAN></DIV>
<DIV dir=ltr align=left><SPAN class=036503101-26052010><FONT color=#0000ff
size=2 face=Arial></FONT></SPAN> </DIV>
<DIV dir=ltr align=left><SPAN class=036503101-26052010><FONT color=#0000ff
size=2 face=Arial>
<option>130.20.186.103:8000</option></FONT></SPAN></DIV>
<DIV dir=ltr align=left><SPAN class=036503101-26052010><FONT color=#0000ff
size=2 face=Arial></FONT></SPAN> </DIV>
<DIV dir=ltr align=left><SPAN class=036503101-26052010><FONT color=#0000ff
size=2 face=Arial>for where the machine (sidney.pnl.gov) where OMERO is
installed.</FONT></SPAN></DIV>
<DIV dir=ltr align=left><SPAN class=036503101-26052010><FONT color=#0000ff
size=2 face=Arial></FONT></SPAN> </DIV>
<DIV dir=ltr align=left><SPAN class=036503101-26052010><FONT color=#0000ff
size=2 face=Arial>2) I altered the </FONT></SPAN></DIV>
<DIV dir=ltr align=left><SPAN class=036503101-26052010><FONT color=#0000ff
size=2 face=Arial> server.py file</FONT></SPAN></DIV>
<DIV dir=ltr align=left><SPAN class=036503101-26052010><FONT color=#0000ff
size=2 face=Arial></FONT></SPAN> </DIV>
<DIV dir=ltr align=left><SPAN class=036503101-26052010><FONT color=#0000ff
size=2 face=Arial>by changing one line to this:</FONT></SPAN></DIV>
<DIV dir=ltr align=left><SPAN class=036503101-26052010><FONT color=#0000ff
size=2 face=Arial></FONT></SPAN> </DIV>
<DIV dir=ltr align=left><SPAN class=036503101-26052010><FONT color=#0000ff
size=2 face=Arial> <CODE><FONT size=3>django =
["python","manage.py","runserver","130.20.186.103:8000","--noreload"]+list(args)</FONT></CODE></FONT></SPAN></DIV>
<DIV dir=ltr align=left><SPAN class=036503101-26052010><FONT color=#0000ff
face=Arial><CODE></CODE></FONT></SPAN> </DIV>
<DIV dir=ltr align=left><SPAN class=036503101-26052010><FONT color=#0000ff
face=Arial><CODE>I then started OMERO using</CODE></FONT></SPAN></DIV>
<DIV dir=ltr align=left><SPAN class=036503101-26052010><FONT color=#0000ff
face=Arial><CODE></CODE></FONT></SPAN> </DIV>
<DIV dir=ltr align=left><SPAN class=036503101-26052010><FONT color=#0000ff
face=Arial><CODE> omero admin start</CODE></FONT></SPAN></DIV>
<DIV dir=ltr align=left><SPAN class=036503101-26052010><FONT color=#0000ff
face=Arial><CODE></CODE></FONT></SPAN> </DIV>
<DIV dir=ltr align=left><SPAN class=036503101-26052010><FONT color=#0000ff
face=Arial><CODE>and started the web server using</CODE></FONT></SPAN></DIV>
<DIV dir=ltr align=left><SPAN class=036503101-26052010><FONT color=#0000ff
face=Arial><CODE></CODE></FONT></SPAN> </DIV>
<DIV dir=ltr align=left><SPAN class=036503101-26052010><FONT color=#0000ff
face=Arial><CODE> <FONT face=Arial>omero admin
ice</FONT></CODE></FONT></SPAN></DIV>
<DIV dir=ltr align=left><SPAN class=036503101-26052010><FONT color=#0000ff
face=Arial><CODE> <FONT face=Arial>>> enable
server</FONT></CODE></FONT></SPAN></DIV>
<DIV dir=ltr align=left><SPAN class=036503101-26052010><FONT color=#0000ff
face=Arial><CODE> <FONT face=Arial>>> start
server</FONT></CODE></FONT></SPAN></DIV>
<DIV dir=ltr align=left><SPAN class=036503101-26052010><FONT color=#0000ff
face=Arial><CODE></CODE></FONT></SPAN> </DIV>
<DIV dir=ltr align=left><SPAN class=036503101-26052010><FONT color=#0000ff
face=Arial><CODE>Unfortunately, the server still does not come up properly when
I type in my browser this address:</CODE></FONT></SPAN></DIV>
<DIV dir=ltr align=left><SPAN class=036503101-26052010><FONT color=#0000ff
face=Arial><CODE> <A
href="http://sidney.pnl.gov:8000">http://sidney.pnl.gov:8000</A>
<ret></CODE></FONT></SPAN></DIV>
<DIV dir=ltr align=left><SPAN class=036503101-26052010><FONT color=#0000ff
face=Arial><CODE>or</CODE></FONT></SPAN></DIV>
<DIV dir=ltr align=left><SPAN class=036503101-26052010><FONT color=#0000ff
face=Arial><CODE> <A
href="http://130.20.186.103:8000">http://130.20.186.103:8000</A>
<ret></CODE></FONT></SPAN></DIV>
<DIV dir=ltr align=left><SPAN class=036503101-26052010><FONT color=#0000ff
face=Arial><CODE></CODE></FONT></SPAN> </DIV>
<DIV dir=ltr align=left><SPAN class=036503101-26052010><FONT color=#0000ff
face=Arial><CODE>However, I do get something - a traceback, rather than the
browser saying that it could not find any such address. So I suppose that is
progress of a sort. Here is the page of text that the browser returns using
either of the above addresses:</CODE></FONT></SPAN></DIV>
<DIV dir=ltr align=left><SPAN class=036503101-26052010><FONT color=#0000ff
face=Arial><CODE></CODE></FONT></SPAN> </DIV>
<DIV dir=ltr align=left><SPAN class=036503101-26052010><FONT color=#0000ff
face=Arial><CODE>"Traceback (most recent call last):<BR><BR> File
"/sid/Omero/Omero_install/omero_dist/lib/python/django/core/servers/basehttp.py",
line 277, in run<BR> self.result = application(self.environ,
self.start_response)<BR><BR> File
"/sid/Omero/Omero_install/omero_dist/lib/python/django/core/servers/basehttp.py",
line 634, in __call__<BR> return self.application(environ,
start_response)<BR><BR> File
"/sid/Omero/Omero_install/omero_dist/lib/python/django/core/handlers/wsgi.py",
line 239, in __call__<BR> response =
self.get_response(request)<BR><BR> File
"/sid/Omero/Omero_install/omero_dist/lib/python/django/core/handlers/base.py",
line 116, in get_response<BR> return
self.handle_uncaught_exception(request, resolver, sys.exc_info())<BR><BR>
File
"/sid/Omero/Omero_install/omero_dist/lib/python/django/core/handlers/base.py",
line 160, in handle_uncaught_exception<BR> return
callback(request, **param_dict)<BR><BR> File
"/sid/Omero/Omero_install/omero_dist/lib/python/omeroweb/feedback/views.py",
line 109, in handler500<BR> return
custom_server_error(request, error500)<BR><BR> File
"/sid/Omero/Omero_install/omero_dist/lib/python/omeroweb/feedback/views.py",
line 97, in custom_server_error<BR> return
HttpResponse(t.render(c))<BR><BR> File
"/sid/Omero/Omero_install/omero_dist/lib/python/django/template/__init__.py",
line 176, in render<BR> return
self.nodelist.render(context)<BR><BR> File
"/sid/Omero/Omero_install/omero_dist/lib/python/django/template/__init__.py",
line 768, in render<BR> bits.append(self.render_node(node,
context))<BR><BR> File
"/sid/Omero/Omero_install/omero_dist/lib/python/django/template/__init__.py",
line 781, in render_node<BR> return
node.render(context)<BR><BR> File
"/sid/Omero/Omero_install/omero_dist/lib/python/django/template/loader_tags.py",
line 97, in render<BR> return
compiled_parent.render(context)<BR><BR> File
"/sid/Omero/Omero_install/omero_dist/lib/python/django/template/__init__.py",
line 176, in render<BR> return
self.nodelist.render(context)<BR><BR> File
"/sid/Omero/Omero_install/omero_dist/lib/python/django/template/__init__.py",
line 768, in render<BR> bits.append(self.render_node(node,
context))<BR><BR> File
"/sid/Omero/Omero_install/omero_dist/lib/python/django/template/__init__.py",
line 781, in render_node<BR> return
node.render(context)<BR><BR> File
"/sid/Omero/Omero_install/omero_dist/lib/python/django/template/defaulttags.py",
line 378, in render<BR> args=args,
kwargs=kwargs)<BR><BR> File
"/sid/Omero/Omero_install/omero_dist/lib/python/django/core/urlresolvers.py",
line 252, in reverse<BR> *args, **kwargs)))<BR><BR> File
"/sid/Omero/Omero_install/omero_dist/lib/python/django/core/urlresolvers.py",
line 241, in reverse<BR> "arguments '%s' not found." %
(lookup_view, args, kwargs))<BR><BR>NoReverseMatch: Reverse for
'omeroweb.webstatic' with arguments '(u'css/layout.css',)' and keyword arguments
'{}' not found."</CODE></FONT></SPAN></DIV>
<DIV><SPAN class=036503101-26052010><FONT color=#0000ff
face=Arial><CODE></CODE></FONT></SPAN> </DIV>
<DIV><SPAN class=036503101-26052010><FONT color=#0000ff face=Arial><CODE><FONT
size=2 face=Arial>%%%%%%%%%%%%%%%%%%%%%</FONT></CODE></FONT></SPAN></DIV>
<DIV><SPAN class=036503101-26052010><FONT color=#0000ff face=Arial><CODE><FONT
size=2 face=Arial></FONT></CODE></FONT></SPAN> </DIV>
<DIV><SPAN class=036503101-26052010><FONT color=#0000ff face=Arial><CODE><FONT
size=2 face=Arial>Alas, I'm not a Python programmer. But perhaps the last line
is the key to the error report? Could anybody give me some guidance as to what I
should try next to bring up the OMERO web
server?</FONT></CODE></FONT></SPAN></DIV>
<DIV><SPAN class=036503101-26052010><FONT color=#0000ff face=Arial><CODE><FONT
size=2 face=Arial></FONT></CODE></FONT></SPAN> </DIV>
<DIV><SPAN class=036503101-26052010><FONT color=#0000ff face=Arial><CODE><FONT
size=2 face=Arial> - Ron</FONT></DIV>
<DIV dir=ltr align=left><BR></DIV></CODE></FONT></SPAN><!-- Converted from text/rtf format -->
<P><SPAN lang=en-us><FONT color=#d47500
face=Arial>___________________________________________</FONT></SPAN> <BR><SPAN
lang=en-us><FONT size=2 face=Verdana>Ronald Taylor, Ph.D.</FONT></SPAN>
<BR><SPAN lang=en-us><FONT size=2 face=Verdana>Computational Biology &
Bioinformatics Group</FONT></SPAN> <BR><SPAN lang=en-us><FONT size=2
face=Verdana>Pacific Northwest National Laboratory</FONT></SPAN> <BR><SPAN
lang=en-us><FONT size=2 face=Verdana>902 Battelle Boulevard</FONT></SPAN>
<BR><SPAN lang=en-us><FONT size=2 face=Verdana>P.O. Box 999, Mail Stop
J4-33</FONT></SPAN> <BR><SPAN lang=en-us><FONT size=2 face=Verdana>Richland,
WA 99352 USA</FONT></SPAN> <BR><SPAN lang=en-us><FONT size=2
face=Verdana>Office: 509-372-6568</FONT></SPAN> <BR><SPAN lang=en-us><FONT
size=2 face=Verdana>Email: ronald.taylor@pnl.gov</FONT></SPAN> </P>
<DIV><FONT color=#0000ff size=2 face=Arial></FONT> </DIV><BR>
<DIV dir=ltr lang=en-us class=OutlookMessageHeader align=left>
<HR tabIndex=-1>
<FONT size=2 face=Tahoma><B>From:</B> Aleksandra Tarkowska
[mailto:aleksandrat@lifesci.dundee.ac.uk] <BR><B>Sent:</B> Thursday, May 13,
2010 8:32 AM<BR><B>To:</B> Taylor, Ronald C<BR><B>Cc:</B>
'ome-users@lists.openmicroscopy.org.uk';
ronald.taylor24@gmail.com<BR><B>Subject:</B> Re: [ome-users] Another newbie
question - why won't Omero web come up?<BR></FONT><BR></DIV>
<DIV></DIV>Hi Ronald
<DIV><BR></DIV>
<DIV>It looks like the webserver started successfully.</DIV>
<DIV><BR></DIV>
<DIV>I suspect you require to configure the out of the box setup to listen
for webadmin and webclient connections on different host configure the
following:</DIV>
<LI>
<BLOCKQUOTE>
<P>Configure the following
in <CODE>~/Desktop/omero/etc/grid/templates.xml</CODE> by adding
after --noreload:</P></BLOCKQUOTE><PRE><CODE><server-template id="WebTemplate">
<parameter name="act" default="on-demand"/>
<server id="Web" exe="python" activation="${act}" pwd="${OMEROPY_HOME}omeroweb">
<option>manage.py</option>
<option>runserver</option>
<option>--noreload</option>
<option>0.0.0.0:8000</option><!-- your ip & port here -->
<env>${PYTHONPATH}</env>
<adapter name="WebAdapter" register-process="true" endpoints="tcp" server-lifetime="false"/>
</server>
</server-template>
</CODE></PRE>
<BLOCKQUOTE>
<P>In
your <CODE>~/Desktop/omero/lib/python/omero/plugins/</CODE> directory
configure the following in <CODE>server.py</CODE>:</P></BLOCKQUOTE><PRE><CODE>django = ["python","manage.py","runserver","0.0.0.0:8000","--noreload"]+list(args)</CODE></PRE>
<DIV>Thanks</DIV>
<DIV>Ola</DIV>
<DIV><BR></DIV>
<DIV><BR></DIV>
<DIV>
<DIV>On 12 May 2010, at 00:00, Taylor, Ronald C wrote:</DIV><BR
class=Apple-interchange-newline>
<BLOCKQUOTE type="cite"><SPAN
style="WIDOWS: 2; TEXT-TRANSFORM: none; TEXT-INDENT: 0px; BORDER-COLLAPSE: separate; FONT: medium Helvetica; WHITE-SPACE: normal; ORPHANS: 2; LETTER-SPACING: normal; COLOR: rgb(0,0,0); WORD-SPACING: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px"
class=Apple-style-span>
<DIV><FONT size=3 face="Tahoma, sans-serif">
<DIV style="TEXT-INDENT: -72pt; PADDING-LEFT: 72pt"> </DIV>
<DIV> </DIV>
<DIV><FONT size=2 face="Arial, sans-serif">Hello,</FONT></DIV>
<DIV><FONT size=2 face="Arial, sans-serif"></FONT> </DIV>
<DIV><FONT size=2 face="Arial, sans-serif">In addition to my problem about the
Omero Java client not coming up (see separate, earlier email), I also cannot
get the Omero web server to come up on port 8000 on my desktop
(sidney.pnl.gov). So I could also use some help with that.</FONT></DIV>
<DIV><FONT size=2 face="Arial, sans-serif"></FONT> </DIV>
<DIV><FONT size=2 face="Arial, sans-serif">Omero web settings were set like so
- which appeared to work fine:</FONT></DIV>
<DIV><FONT size=2 face="Arial, sans-serif"></FONT> </DIV>
<DIV><FONT face="Courier New, monospace">sidney85% omero web
settings</FONT></DIV>
<DIV><FONT face="Courier New, monospace"></FONT> </DIV>
<DIV><FONT face="Courier New, monospace">Please enter the domain you want to
run OMERO.web on (<A
href="http://www.domain.com:8000/):http://sidney.pnl.gov:8000"><FONT
color=#0000ff><U>http://www.domain.com:8000/):http://sidney.pnl.gov:8000</U></FONT></A></FONT></DIV>
<DIV><FONT face="Courier New, monospace">Please enter the Email address you
want to send from (<A
href="mailto:omero_admin@example.com">omero_admin@example.com</A>):<SPAN
class=Apple-converted-space> </SPAN><A
href="mailto:ronald.taylor@pnl.gov">ronald.taylor@pnl.gov</A><SPAN
class=Apple-converted-space> </SPAN>Please enter the SMTP server host you
want to send from (smtp.example.com): mailhost.emsl.pnl.gov</FONT></DIV>
<DIV><FONT face="Courier New, monospace">Optional: please enter the SMTP
server port (default 25):</FONT></DIV>
<DIV><FONT face="Courier New, monospace">Optional: Please enter the SMTP
server username:</FONT></DIV>
<DIV><FONT face="Courier New, monospace">Optional: Password:</FONT></DIV>
<DIV><FONT face="Courier New, monospace"></FONT> </DIV>
<DIV><FONT face="Courier New, monospace">Optional: TSL? (yes/no):</FONT></DIV>
<DIV><FONT face="Courier New, monospace">Saved to
/sid/Omero/Omero_install/omero_dist/lib/python/omeroweb/custom_settings.py</FONT></DIV>
<DIV><FONT face="Courier New, monospace"></FONT> </DIV>
<DIV><FONT face="Courier New, monospace"></FONT> </DIV>
<DIV><FONT face="Courier New, monospace">Please enter Username for OMERO.web
administrator: rtaylor Please enter Email address:<SPAN
class=Apple-converted-space> </SPAN><A
href="mailto:ronald.taylor@pnl.gov">ronald.taylor@pnl.gov</A><SPAN
class=Apple-converted-space> </SPAN>Please enter password for OMERO.web
administrator: r*****9</FONT></DIV>
<DIV><FONT face="Courier New, monospace"></FONT> </DIV>
<DIV><FONT face="Courier New, monospace">Please re-enter password for
OMERO.web administrator: r*****9</FONT></DIV>
<DIV><FONT face="Courier New, monospace"></FONT> </DIV>
<DIV><FONT face="Courier New, monospace"><string>:36:
DeprecationWarning: the sha module is deprecated; use the hashlib module
instead Saved to
/sid/Omero/Omero_install/omero_dist/lib/python/omeroweb/initial_data.json</FONT></DIV>
<DIV><FONT face="Courier New, monospace"></FONT> </DIV>
<DIV><FONT face="Courier New, monospace"></FONT> </DIV>
<DIV><FONT face="Courier New, monospace">Database
synchronization...</FONT></DIV>
<DIV><FONT face="Courier New, monospace"></FONT> </DIV>
<DIV><FONT face="Courier New, monospace">Creating table
django_admin_log</FONT></DIV>
<DIV><FONT face="Courier New, monospace">Creating table
auth_permission</FONT></DIV>
<DIV><FONT face="Courier New, monospace">Creating table
auth_group</FONT></DIV>
<DIV><FONT face="Courier New, monospace">Creating table auth_user</FONT></DIV>
<DIV><FONT face="Courier New, monospace">Creating table
auth_message</FONT></DIV>
<DIV><FONT face="Courier New, monospace">Creating table
django_content_type</FONT></DIV>
<DIV><FONT face="Courier New, monospace">Creating table
django_session</FONT></DIV>
<DIV><FONT face="Courier New, monospace">Creating table
django_site</FONT></DIV>
<DIV><FONT face="Courier New, monospace">Creating table
feedback_emailtemplate</FONT></DIV>
<DIV><FONT face="Courier New, monospace">Creating table
webadmin_gateway</FONT></DIV>
<DIV><FONT face="Courier New, monospace">Installing index for admin.LogEntry
model Installing index for auth.Permission model Installing index for
auth.Message model Installing json fixture 'initial_data' from absolute
path.</FONT></DIV>
<DIV><FONT face="Courier New, monospace">Installed 2 object(s) from 1
fixture(s)</FONT></DIV>
<DIV><FONT face="Courier New, monospace">OMERO.web was configured successful.
Please start the application.</FONT></DIV>
<DIV><FONT face="Courier New, monospace"></FONT> </DIV>
<DIV><FONT face="Courier New, monospace">sidney86%</FONT></DIV>
<DIV><FONT face="Courier New, monospace"></FONT> </DIV>
<DIV><FONT
face="Courier New, monospace">%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%</FONT></DIV>
<DIV><FONT face="Courier New, monospace"></FONT> </DIV>
<DIV><FONT face="Courier New, monospace">I next invoked ICE and started the
OMERO web server, like so:</FONT></DIV>
<DIV><FONT face="Courier New, monospace"></FONT> </DIV>
<DIV><FONT face="Courier New, monospace"></FONT> </DIV>
<DIV><FONT face="Courier New, monospace">sidney294% omero admin
ice</FONT></DIV>
<DIV><FONT face="Courier New, monospace">Ice 3.4.0 Copyright 2003-2010
ZeroC, Inc.</FONT></DIV>
<DIV><FONT face="Courier New, monospace">>>> server enable
web</FONT></DIV>
<DIV><FONT face="Courier New, monospace">error: couldn't find server
`web'</FONT></DIV>
<DIV><FONT face="Courier New, monospace">>>></FONT></DIV>
<DIV><FONT face="Courier New, monospace">>>> server enable
Web</FONT></DIV>
<DIV><FONT face="Courier New, monospace">>>></FONT></DIV>
<DIV><FONT face="Courier New, monospace">>>> server start
Web</FONT></DIV>
<DIV><FONT face="Courier New, monospace">>>></FONT></DIV>
<DIV><FONT face="Courier New, monospace">>>> server state
Web</FONT></DIV>
<DIV><FONT face="Courier New, monospace">active (pid = 7269,
enabled)</FONT></DIV>
<DIV><FONT face="Courier New, monospace">>>></FONT></DIV>
<DIV><FONT face="Courier New, monospace">>>> exit</FONT></DIV>
<DIV><FONT face="Courier New, monospace">sidney295%</FONT></DIV>
<DIV><FONT face="Courier New, monospace">sidney295%</FONT></DIV>
<DIV><FONT face="Courier New, monospace"></FONT> </DIV>
<DIV><FONT face="Courier New, monospace"></FONT> </DIV>
<DIV><FONT size=2 face="Arial, sans-serif">That appeared to work OK, too. I
also checked on port 8000 - it is open.</FONT></DIV>
<DIV><FONT size=2 face="Arial, sans-serif"></FONT> </DIV>
<DIV><FONT size=2 face="Arial, sans-serif">However, when I point my browser
to</FONT></DIV>
<DIV><FONT size=2 face="Arial, sans-serif"></FONT> </DIV>
<DIV><FONT size=2 face="Arial, sans-serif"> <SPAN
class=Apple-converted-space> </SPAN><A
href="http://sidney.pnl.gov:8000"><FONT
color=#0000ff><U>http://sidney.pnl.gov:8000</U></FONT></A></FONT></DIV>
<DIV><FONT color=#0000ff size=2 face="Arial, sans-serif"></FONT> </DIV>
<DIV><FONT color=#0000ff size=2 face="Arial, sans-serif">My browser says that
it connot connect. What is going wrong?</FONT></DIV>
<DIV><FONT color=#0000ff size=2 face="Arial, sans-serif"></FONT> </DIV>
<DIV><FONT color=#0000ff size=2 face="Arial, sans-serif"> - Ron
Taylor</FONT></DIV>
<DIV><FONT color=#0000ff size=2 face="Arial, sans-serif"></FONT> </DIV>
<DIV><FONT color=#0000ff size=2 face="Arial, sans-serif">PS -<SPAN
class=Apple-converted-space> </SPAN><FONT color=#000000>Though I gave the
results of a "omero adimin diagnostics" run in the earlier email, I repeat it
here at bottom for easy reference.</FONT></FONT></DIV>
<DIV><FONT color=#0000ff size=2 face="Arial, sans-serif"></FONT> </DIV>
<DIV><FONT color=#0000ff size=2 face="Arial, sans-serif"></FONT> </DIV>
<DIV><FONT color=#0000ff size=2
face="Arial, sans-serif">%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%</FONT></DIV>
<DIV><FONT size=2 face="Arial, sans-serif"></FONT> </DIV>
<DIV><FONT size=2 face="Arial, sans-serif">Diagnostic run:</FONT></DIV>
<DIV><FONT size=2 face="Arial, sans-serif"></FONT> </DIV>
<DIV><FONT face="Courier New, monospace">sidney87% omero admin
diagnostics</FONT></DIV>
<DIV><FONT face="Courier New, monospace"></FONT> </DIV>
<DIV><FONT
face="Courier New, monospace">================================================================================</FONT></DIV>
<DIV><FONT face="Courier New, monospace">OMERO Diagnostics
Beta-4.1.1-r5927-b91</FONT></DIV>
<DIV><FONT
face="Courier New, monospace">================================================================================</FONT></DIV>
<DIV><FONT face="Courier New, monospace"></FONT> </DIV>
<DIV><FONT face="Courier New, monospace">Commands: java
-version
1.6.0 (/msrc/apps/jdk_1.6/bin/java -- 2
others)</FONT></DIV>
<DIV><FONT face="Courier New, monospace">Commands: python
-V
2.6.5 (/sid/Omero/Python/bin/python -- 2
others)</FONT></DIV>
<DIV><FONT face="Courier New, monospace">Commands: icegridnode
--version
3.4.0
(/sid/Omero/Ice/Ice-3.4.0/bin/icegridnode)</FONT></DIV>
<DIV><FONT face="Courier New, monospace">Commands: icegridadmin
--version
3.4.0
(/sid/Omero/Ice/Ice-3.4.0/bin/icegridadmin)</FONT></DIV>
<DIV><FONT face="Courier New, monospace">Commands: psql
--version
8.3.10 (/sid/Omero/Postgres/8.3/bin/psql)</FONT></DIV>
<DIV><FONT face="Courier New, monospace"></FONT> </DIV>
<DIV><FONT face="Courier New, monospace">Server:
icegridnode
running</FONT></DIV>
<DIV><FONT face="Courier New, monospace">Server:
Blitz-0
active (pid = 7016, enabled)</FONT></DIV>
<DIV><FONT face="Courier New, monospace">Server:
DropBox
inactive (disabled)</FONT></DIV>
<DIV><FONT face="Courier New, monospace">Server:
FSServer
active (pid = 7029, enabled)</FONT></DIV>
<DIV><FONT face="Courier New, monospace">Server:
Indexer-0
active (pid = 7031, enabled)</FONT></DIV>
<DIV><FONT face="Courier New, monospace">Server:
OMERO.Glacier2
active (pid = 7034, enabled)</FONT></DIV>
<DIV><FONT face="Courier New, monospace">Server:
OMERO.IceStorm
inactive (disabled)</FONT></DIV>
<DIV><FONT face="Courier New, monospace">Server:
Processor-0
inactive (disabled)</FONT></DIV>
<DIV><FONT face="Courier New, monospace">Server:
Tables-0
inactive (disabled)</FONT></DIV>
<DIV><FONT face="Courier New, monospace">Server:
TestDropBox
inactive (enabled)</FONT></DIV>
<DIV><FONT face="Courier New, monospace">Server:
Web
active (pid = 7774, enabled)</FONT></DIV>
<DIV><FONT face="Courier New, monospace"></FONT> </DIV>
<DIV><FONT face="Courier New, monospace">Log dir:
/sid/Omero/Omero_install/omero_dist/var/log exists</FONT></DIV>
<DIV><FONT face="Courier New, monospace"></FONT> </DIV>
<DIV><FONT face="Courier New, monospace">Log files:
Blitz-0.log
44.0 KB errors=2
warnings=34 </FONT></DIV>
<DIV><FONT face="Courier New, monospace">Log files:
DropBox.log
n/a</FONT></DIV>
<DIV><FONT face="Courier New, monospace">Log files:
FSServer.log
2.0 KB errors=0
warnings=12 </FONT></DIV>
<DIV><FONT face="Courier New, monospace">Log files:
Indexer-0.log
3.0 KB errors=0
warnings=2 </FONT></DIV>
<DIV><FONT face="Courier New, monospace">Log files:
OMEROweb.log
0.0 KB </FONT></DIV>
<DIV><FONT face="Courier New, monospace">Log files:
OMEROweb.log.2010-05-11 0.0
KB </FONT></DIV>
<DIV><FONT face="Courier New, monospace">Log files:
Processor-0.log
n/a</FONT></DIV>
<DIV><FONT face="Courier New, monospace">Log files:
Tables-0.log
n/a</FONT></DIV>
<DIV><FONT face="Courier New, monospace">Log files:
TestDropBox.log
n/a</FONT></DIV>
<DIV><FONT face="Courier New, monospace">Log files:
master.err
6.0 KB errors=0
warnings=4 </FONT></DIV>
<DIV><FONT face="Courier New, monospace">Log files:
master.out
0.0 KB </FONT></DIV>
<DIV><FONT face="Courier New, monospace">Log files: Total
size
0.06 MB</FONT></DIV>
<DIV><FONT face="Courier New, monospace">sidney88%</FONT></DIV>
<DIV><FONT face="Courier New, monospace"></FONT> </DIV>
<DIV><FONT face="Courier New, monospace"></FONT> </DIV>
<DIV><FONT face="Courier New, monospace">I<SPAN
class=Apple-converted-space> </SPAN><FONT color=#0000ff size=2
face="Arial, sans-serif">also<SPAN
class=Apple-converted-space> </SPAN></FONT>set the<FONT color=#0000ff
size=2 face="Arial, sans-serif"><SPAN
class=Apple-converted-space> </SPAN>Omero web parameters,<SPAN
class=Apple-converted-space> </SPAN></FONT>like so:</FONT></DIV>
<DIV><FONT face="Courier New, monospace"></FONT> </DIV>
<DIV><FONT face="Courier New, monospace">sidney85% omero web
settings</FONT></DIV>
<DIV><FONT face="Courier New, monospace"></FONT> </DIV>
<DIV><FONT face="Courier New, monospace">Please enter the domain you want to
run OMERO.web on (<A
href="http://www.domain.com:8000/):http://sidney.pnl.gov:8000"><FONT
color=#0000ff><U>http://www.domain.com:8000/):http://sidney.pnl.gov:8000</U></FONT></A></FONT></DIV>
<DIV><FONT face="Courier New, monospace">Please enter the Email address you
want to send from (<A
href="mailto:omero_admin@example.com">omero_admin@example.com</A>):<SPAN
class=Apple-converted-space> </SPAN><A
href="mailto:ronald.taylor@pnl.gov">ronald.taylor@pnl.gov</A><SPAN
class=Apple-converted-space> </SPAN>Please enter the SMTP server host you
want to send from (smtp.example.com): mailhost.emsl.pnl.gov</FONT></DIV>
<DIV><FONT face="Courier New, monospace">Optional: please enter the SMTP
server port (default 25):</FONT></DIV>
<DIV><FONT face="Courier New, monospace">Optional: Please enter the SMTP
server username:</FONT></DIV>
<DIV><FONT face="Courier New, monospace">Optional: Password:</FONT></DIV>
<DIV><FONT face="Courier New, monospace"></FONT> </DIV>
<DIV><FONT face="Courier New, monospace">Optional: TSL? (yes/no):</FONT></DIV>
<DIV><FONT face="Courier New, monospace">Saved to
/sid/Omero/Omero_install/omero_dist/lib/python/omeroweb/custom_settings.py</FONT></DIV>
<DIV><FONT face="Courier New, monospace"></FONT> </DIV>
<DIV><FONT face="Courier New, monospace"></FONT> </DIV>
<DIV><FONT face="Courier New, monospace">Please enter Username for OMERO.web
administrator: rtaylor</FONT></DIV>
<DIV><FONT face="Courier New, monospace">Please enter Email address:<SPAN
class=Apple-converted-space> </SPAN><A
href="mailto:ronald.taylor@pnl.gov">ronald.taylor@pnl.gov</A></FONT></DIV>
<DIV><FONT face="Courier New, monospace">Please enter password for OMERO.web
administrator: r*****9</FONT></DIV>
<DIV><FONT face="Courier New, monospace"></FONT> </DIV>
<DIV><FONT face="Courier New, monospace">Please re-enter password for
OMERO.web administrator: r*****9</FONT></DIV>
<DIV><FONT face="Courier New, monospace"></FONT> </DIV>
<DIV><FONT face="Courier New, monospace"><string>:36:
DeprecationWarning: the sha module is deprecated; use the hashlib module
instead</FONT></DIV>
<DIV><FONT face="Courier New, monospace">Saved to
/sid/Omero/Omero_install/omero_dist/lib/python/omeroweb/initial_data.json</FONT></DIV>
<DIV><FONT face="Courier New, monospace"></FONT> </DIV>
<DIV><FONT face="Courier New, monospace"></FONT> </DIV>
<DIV><FONT face="Courier New, monospace">Database
synchronization...</FONT></DIV>
<DIV><FONT face="Courier New, monospace"></FONT> </DIV>
<DIV><FONT face="Courier New, monospace">Creating table
django_admin_log</FONT></DIV>
<DIV><FONT face="Courier New, monospace">Creating table
auth_permission</FONT></DIV>
<DIV><FONT face="Courier New, monospace">Creating table
auth_group</FONT></DIV>
<DIV><FONT face="Courier New, monospace">Creating table auth_user</FONT></DIV>
<DIV><FONT face="Courier New, monospace">Creating table
auth_message</FONT></DIV>
<DIV><FONT face="Courier New, monospace">Creating table
django_content_type</FONT></DIV>
<DIV><FONT face="Courier New, monospace">Creating table
django_session</FONT></DIV>
<DIV><FONT face="Courier New, monospace">Creating table
django_site</FONT></DIV>
<DIV><FONT face="Courier New, monospace">Creating table
feedback_emailtemplate</FONT></DIV>
<DIV><FONT face="Courier New, monospace">Creating table
webadmin_gateway</FONT></DIV>
<DIV><FONT face="Courier New, monospace">Installing index for admin.LogEntry
model Installing index for auth.Permission model Installing index for
auth.Message model Installing json fixture 'initial_data' from absolute
path.</FONT></DIV>
<DIV><FONT face="Courier New, monospace">Installed 2 object(s) from 1
fixture(s)</FONT></DIV>
<DIV><FONT face="Courier New, monospace">OMERO.web was configured successful.
Please start the application.</FONT></DIV>
<DIV><FONT face="Courier New, monospace"></FONT> </DIV>
<DIV><FONT face="Courier New, monospace">sidney86%</FONT></DIV>
<DIV><FONT face="Courier New, monospace"></FONT> </DIV>
<DIV><FONT
face="Courier New, monospace">%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%</FONT></DIV>
<DIV><FONT face="Courier New, monospace"></FONT> </DIV>
<DIV><FONT color=#d47500 size=2
face="Arial, sans-serif">___________________________________________</FONT></DIV>
<DIV><FONT size=2 face="Verdana, sans-serif">Ronald Taylor, Ph.D.</FONT></DIV>
<DIV><FONT size=2 face="Verdana, sans-serif">Computational Biology &
Bioinformatics Group</FONT></DIV>
<DIV><FONT size=2 face="Verdana, sans-serif">Pacific Northwest National
Laboratory</FONT></DIV>
<DIV><FONT size=2 face="Verdana, sans-serif">902 Battelle
Boulevard</FONT></DIV>
<DIV><FONT size=2 face="Verdana, sans-serif">P.O. Box 999, Mail Stop
J4-33</FONT></DIV>
<DIV><FONT size=2 face="Verdana, sans-serif">Richland, WA 99352
USA</FONT></DIV>
<DIV><FONT size=2 face="Verdana, sans-serif">Office:
509-372-6568</FONT></DIV>
<DIV><FONT size=2 face="Verdana, sans-serif">Email:<SPAN
class=Apple-converted-space> </SPAN><A
href="mailto:ronald.taylor@pnl.gov">ronald.taylor@pnl.gov</A></FONT></DIV>
<DIV><FONT size=2 face="Verdana, sans-serif"></FONT> </DIV>
<DIV><FONT
face="Courier New, monospace"></FONT> </DIV></FONT>_______________________________________________<BR>ome-users
mailing list<BR><A
href="mailto:ome-users@lists.openmicroscopy.org.uk">ome-users@lists.openmicroscopy.org.uk</A><BR><A
href="http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users">http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users</A><BR></DIV></SPAN></BLOCKQUOTE></DIV><BR>
<DIV><SPAN
style="WIDOWS: 2; TEXT-TRANSFORM: none; TEXT-INDENT: 0px; BORDER-COLLAPSE: separate; FONT: 12px Helvetica; WHITE-SPACE: normal; ORPHANS: 2; LETTER-SPACING: normal; COLOR: rgb(0,0,0); WORD-SPACING: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0"
class=Apple-style-span>
<DIV
style="WORD-WRAP: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space">
<DIV>Thanks</DIV>
<DIV>Ola</DIV></DIV></SPAN></DIV><BR></LI></BODY></HTML>