formats.ImageReader.setId(ImageReader.java:588) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at loci.formats.ChannelFiller.setId(ChannelFiller.java:179) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:205) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at ome.formats.importer.ImportLibrary.open(ImportLibrary.java:213) at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:344) at ome.formats.importer.gui.ImportHandler.importImages(ImportHandler.java:182) at ome.formats.importer.gui.ImportHandler.access$100(ImportHandler.java:45) at ome.formats.importer.gui.ImportHandler$2.run(ImportHandler.java:97) at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source) at java.util.concurrent.FutureTask$Sync.innerRun(Unknown Source) at java.util.concurrent.FutureTask.run(Unknown Source) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(Unknown Source) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) at java.lang.Thread.run(Unknown Source) 2010-03-15 16:05:51,592 885409 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - LOADING_IMAGE: 090924_sl2_s11_af_w1_s3_t1.TIF 2010-03-15 16:05:52,545 886362 [2-thread-1] DEBUG ome.formats.OMEROMetadataStoreClient - Creating root! 2010-03-15 16:05:52,654 886471 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - BIOFORMATS_STATUS: Reading IFDs 2010-03-15 16:05:52,654 886471 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - BIOFORMATS_STATUS: Reading IFDs 2010-03-15 16:05:52,654 886471 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - BIOFORMATS_STATUS: Reading IFDs 2010-03-15 16:05:52,685 886502 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - BIOFORMATS_STATUS: Populating metadata 2010-03-15 16:05:52,685 886502 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - BIOFORMATS_STATUS: Populating metadata 2010-03-15 16:05:52,685 886502 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - BIOFORMATS_STATUS: Populating metadata 2010-03-15 16:05:52,701 886518 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - BIOFORMATS_STATUS: Populating OME metadata 2010-03-15 16:05:52,701 886518 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - BIOFORMATS_STATUS: Populating OME metadata 2010-03-15 16:05:52,701 886518 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - BIOFORMATS_STATUS: Populating OME metadata 2010-03-15 16:05:52,717 886534 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - INTERNAL_EXCEPTION: T:\OMERO\test_images\2_Axiophot\090925_sl2_section11\090924_sl2_s11_af_w1_s3_t1.TIF java.lang.NumberFormatException: For input string: "Red" at sun.misc.FloatingDecimal.readJavaFormatString(Unknown Source) at java.lang.Float.parseFloat(Unknown Source) at loci.formats.in.MetamorphHandler.checkKey(MetamorphHandler.java:208) at loci.formats.in.MetamorphHandler.startElement(MetamorphHandler.java:136) at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.startElement(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanStartElement(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl$FragmentContentDriver.next(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(Unknown Source) at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl$JAXPSAXParser.parse(Unknown Source) at javax.xml.parsers.SAXParser.parse(Unknown Source) at javax.xml.parsers.SAXParser.parse(Unknown Source) at loci.common.XMLTools.parseXML(XMLTools.java:277) at loci.common.XMLTools.parseXML(XMLTools.java:252) at loci.formats.in.MetamorphTiffReader.initFile(MetamorphTiffReader.java:86) at loci.formats.FormatReader.setId(FormatReader.java:901) at loci.formats.ImageReader.setId(ImageReader.java:588) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at loci.formats.ChannelFiller.setId(ChannelFiller.java:179) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:205) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at ome.formats.importer.ImportLibrary.open(ImportLibrary.java:213) at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:344) at ome.formats.importer.gui.ImportHandler.importImages(ImportHandler.java:182) at ome.formats.importer.gui.ImportHandler.access$100(ImportHandler.java:45) at ome.formats.importer.gui.ImportHandler$2.run(ImportHandler.java:97) at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source) at java.util.concurrent.FutureTask$Sync.innerRun(Unknown Source) at java.util.concurrent.FutureTask.run(Unknown Source) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(Unknown Source) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) at java.lang.Thread.run(Unknown Source) 2010-03-15 16:05:52,717 886534 [2-thread-1] ERROR ome.formats.importer.gui.GuiImporter - EXCEPTION_EVENT 2010-03-15 16:05:52,717 886534 [2-thread-1] ERROR importer.gui.ErrorHandler$MyErrorHandler - INTERNAL_EXCEPTION: T:\OMERO\test_images\2_Axiophot\090925_sl2_section11\090924_sl2_s11_af_w1_s3_t1.TIF java.lang.NumberFormatException: For input string: "Red" at sun.misc.FloatingDecimal.readJavaFormatString(Unknown Source) at java.lang.Float.parseFloat(Unknown Source) at loci.formats.in.MetamorphHandler.checkKey(MetamorphHandler.java:208) at loci.formats.in.MetamorphHandler.startElement(MetamorphHandler.java:136) at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.startElement(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanStartElement(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl$FragmentContentDriver.next(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(Unknown Source) at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl$JAXPSAXParser.parse(Unknown Source) at javax.xml.parsers.SAXParser.parse(Unknown Source) at javax.xml.parsers.SAXParser.parse(Unknown Source) at loci.common.XMLTools.parseXML(XMLTools.java:277) at loci.common.XMLTools.parseXML(XMLTools.java:252) at loci.formats.in.MetamorphTiffReader.initFile(MetamorphTiffReader.java:86) at loci.formats.FormatReader.setId(FormatReader.java:901) at loci.formats.ImageReader.setId(ImageReader.java:588) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at loci.formats.ChannelFiller.setId(ChannelFiller.java:179) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:205) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at ome.formats.importer.ImportLibrary.open(ImportLibrary.java:213) at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:344) at ome.formats.importer.gui.ImportHandler.importImages(ImportHandler.java:182) at ome.formats.importer.gui.ImportHandler.access$100(ImportHandler.java:45) at ome.formats.importer.gui.ImportHandler$2.run(ImportHandler.java:97) at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source) at java.util.concurrent.FutureTask$Sync.innerRun(Unknown Source) at java.util.concurrent.FutureTask.run(Unknown Source) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(Unknown Source) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) at java.lang.Thread.run(Unknown Source) 2010-03-15 16:05:52,732 886549 [2-thread-1] ERROR e.formats.importer.gui.GuiCommonElements - Couldn't find icon: null 2010-03-15 16:05:52,732 886549 [2-thread-1] ERROR e.formats.importer.gui.GuiCommonElements - Couldn't find icon: null 2010-03-15 16:05:52,748 886565 [2-thread-1] DEBUG ome.formats.OMEROMetadataStoreClient - Creating root! 2010-03-15 16:05:52,748 886565 [2-thread-1] ERROR ome.formats.importer.gui.ImportHandler - Generic error while importing image. 2010-03-15 16:05:52,748 886565 [2-thread-1] DEBUG ome.formats.importer.gui.GuiImporter - java.lang.NumberFormatException: For input string: "Red" at sun.misc.FloatingDecimal.readJavaFormatString(Unknown Source) at java.lang.Float.parseFloat(Unknown Source) at loci.formats.in.MetamorphHandler.checkKey(MetamorphHandler.java:208) at loci.formats.in.MetamorphHandler.startElement(MetamorphHandler.java:136) at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.startElement(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanStartElement(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl$FragmentContentDriver.next(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(Unknown Source) at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl$JAXPSAXParser.parse(Unknown Source) at javax.xml.parsers.SAXParser.parse(Unknown Source) at javax.xml.parsers.SAXParser.parse(Unknown Source) at loci.common.XMLTools.parseXML(XMLTools.java:277) at loci.common.XMLTools.parseXML(XMLTools.java:252) at loci.formats.in.MetamorphTiffReader.initFile(MetamorphTiffReader.java:86) at loci.formats.FormatReader.setId(FormatReader.java:901) at loci.formats.ImageReader.setId(ImageReader.java:588) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at loci.formats.ChannelFiller.setId(ChannelFiller.java:179) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:205) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at ome.formats.importer.ImportLibrary.open(ImportLibrary.java:213) at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:344) at ome.formats.importer.gui.ImportHandler.importImages(ImportHandler.java:182) at ome.formats.importer.gui.ImportHandler.access$100(ImportHandler.java:45) at ome.formats.importer.gui.ImportHandler$2.run(ImportHandler.java:97) at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source) at java.util.concurrent.FutureTask$Sync.innerRun(Unknown Source) at java.util.concurrent.FutureTask.run(Unknown Source) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(Unknown Source) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) at java.lang.Thread.run(Unknown Source) java.lang.NumberFormatException: For input string: "Red" at sun.misc.FloatingDecimal.readJavaFormatString(Unknown Source) at java.lang.Float.parseFloat(Unknown Source) at loci.formats.in.MetamorphHandler.checkKey(MetamorphHandler.java:208) at loci.formats.in.MetamorphHandler.startElement(MetamorphHandler.java:136) at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.startElement(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanStartElement(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl$FragmentContentDriver.next(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(Unknown Source) at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl$JAXPSAXParser.parse(Unknown Source) at javax.xml.parsers.SAXParser.parse(Unknown Source) at javax.xml.parsers.SAXParser.parse(Unknown Source) at loci.common.XMLTools.parseXML(XMLTools.java:277) at loci.common.XMLTools.parseXML(XMLTools.java:252) at loci.formats.in.MetamorphTiffReader.initFile(MetamorphTiffReader.java:86) at loci.formats.FormatReader.setId(FormatReader.java:901) at loci.formats.ImageReader.setId(ImageReader.java:588) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at loci.formats.ChannelFiller.setId(ChannelFiller.java:179) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:205) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at ome.formats.importer.ImportLibrary.open(ImportLibrary.java:213) at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:344) at ome.formats.importer.gui.ImportHandler.importImages(ImportHandler.java:182) at ome.formats.importer.gui.ImportHandler.access$100(ImportHandler.java:45) at ome.formats.importer.gui.ImportHandler$2.run(ImportHandler.java:97) at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source) at java.util.concurrent.FutureTask$Sync.innerRun(Unknown Source) at java.util.concurrent.FutureTask.run(Unknown Source) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(Unknown Source) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) at java.lang.Thread.run(Unknown Source) 2010-03-15 16:05:52,779 886596 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - LOADING_IMAGE: 090924_sl2_s11_af_w1_s4_t1.TIF 2010-03-15 16:05:53,373 887190 [2-thread-1] DEBUG ome.formats.OMEROMetadataStoreClient - Creating root! 2010-03-15 16:05:53,389 887206 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - BIOFORMATS_STATUS: Reading IFDs 2010-03-15 16:05:53,389 887206 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - BIOFORMATS_STATUS: Reading IFDs 2010-03-15 16:05:53,404 887221 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - BIOFORMATS_STATUS: Reading IFDs 2010-03-15 16:05:53,420 887237 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - BIOFORMATS_STATUS: Populating metadata 2010-03-15 16:05:53,420 887237 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - BIOFORMATS_STATUS: Populating metadata 2010-03-15 16:05:53,420 887237 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - BIOFORMATS_STATUS: Populating metadata 2010-03-15 16:05:53,435 887252 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - BIOFORMATS_STATUS: Populating OME metadata 2010-03-15 16:05:53,435 887252 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - BIOFORMATS_STATUS: Populating OME metadata 2010-03-15 16:05:53,435 887252 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - BIOFORMATS_STATUS: Populating OME metadata 2010-03-15 16:05:53,451 887268 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - INTERNAL_EXCEPTION: T:\OMERO\test_images\2_Axiophot\090925_sl2_section11\090924_sl2_s11_af_w1_s4_t1.TIF java.lang.NumberFormatException: For input string: "Red" at sun.misc.FloatingDecimal.readJavaFormatString(Unknown Source) at java.lang.Float.parseFloat(Unknown Source) at loci.formats.in.MetamorphHandler.checkKey(MetamorphHandler.java:208) at loci.formats.in.MetamorphHandler.startElement(MetamorphHandler.java:136) at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.startElement(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanStartElement(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl$FragmentContentDriver.next(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(Unknown Source) at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl$JAXPSAXParser.parse(Unknown Source) at javax.xml.parsers.SAXParser.parse(Unknown Source) at javax.xml.parsers.SAXParser.parse(Unknown Source) at loci.common.XMLTools.parseXML(XMLTools.java:277) at loci.common.XMLTools.parseXML(XMLTools.java:252) at loci.formats.in.MetamorphTiffReader.initFile(MetamorphTiffReader.java:86) at loci.formats.FormatReader.setId(FormatReader.java:901) at loci.formats.ImageReader.setId(ImageReader.java:588) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at loci.formats.ChannelFiller.setId(ChannelFiller.java:179) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:205) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at ome.formats.importer.ImportLibrary.open(ImportLibrary.java:213) at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:344) at ome.formats.importer.gui.ImportHandler.importImages(ImportHandler.java:182) at ome.formats.importer.gui.ImportHandler.access$100(ImportHandler.java:45) at ome.formats.importer.gui.ImportHandler$2.run(ImportHandler.java:97) at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source) at java.util.concurrent.FutureTask$Sync.innerRun(Unknown Source) at java.util.concurrent.FutureTask.run(Unknown Source) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(Unknown Source) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) at java.lang.Thread.run(Unknown Source) 2010-03-15 16:05:53,451 887268 [2-thread-1] ERROR ome.formats.importer.gui.GuiImporter - EXCEPTION_EVENT 2010-03-15 16:05:53,451 887268 [2-thread-1] ERROR importer.gui.ErrorHandler$MyErrorHandler - INTERNAL_EXCEPTION: T:\OMERO\test_images\2_Axiophot\090925_sl2_section11\090924_sl2_s11_af_w1_s4_t1.TIF java.lang.NumberFormatException: For input string: "Red" at sun.misc.FloatingDecimal.readJavaFormatString(Unknown Source) at java.lang.Float.parseFloat(Unknown Source) at loci.formats.in.MetamorphHandler.checkKey(MetamorphHandler.java:208) at loci.formats.in.MetamorphHandler.startElement(MetamorphHandler.java:136) at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.startElement(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanStartElement(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl$FragmentContentDriver.next(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(Unknown Source) at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl$JAXPSAXParser.parse(Unknown Source) at javax.xml.parsers.SAXParser.parse(Unknown Source) at javax.xml.parsers.SAXParser.parse(Unknown Source) at loci.common.XMLTools.parseXML(XMLTools.java:277) at loci.common.XMLTools.parseXML(XMLTools.java:252) at loci.formats.in.MetamorphTiffReader.initFile(MetamorphTiffReader.java:86) at loci.formats.FormatReader.setId(FormatReader.java:901) at loci.formats.ImageReader.setId(ImageReader.java:588) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at loci.formats.ChannelFiller.setId(ChannelFiller.java:179) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:205) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at ome.formats.importer.ImportLibrary.open(ImportLibrary.java:213) at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:344) at ome.formats.importer.gui.ImportHandler.importImages(ImportHandler.java:182) at ome.formats.importer.gui.ImportHandler.access$100(ImportHandler.java:45) at ome.formats.importer.gui.ImportHandler$2.run(ImportHandler.java:97) at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source) at java.util.concurrent.FutureTask$Sync.innerRun(Unknown Source) at java.util.concurrent.FutureTask.run(Unknown Source) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(Unknown Source) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) at java.lang.Thread.run(Unknown Source) 2010-03-15 16:05:53,467 887284 [2-thread-1] ERROR e.formats.importer.gui.GuiCommonElements - Couldn't find icon: null 2010-03-15 16:05:53,467 887284 [2-thread-1] ERROR e.formats.importer.gui.GuiCommonElements - Couldn't find icon: null 2010-03-15 16:05:53,482 887299 [2-thread-1] DEBUG ome.formats.OMEROMetadataStoreClient - Creating root! 2010-03-15 16:05:53,482 887299 [2-thread-1] ERROR ome.formats.importer.gui.ImportHandler - Generic error while importing image. 2010-03-15 16:05:53,482 887299 [2-thread-1] DEBUG ome.formats.importer.gui.GuiImporter - java.lang.NumberFormatException: For input string: "Red" at sun.misc.FloatingDecimal.readJavaFormatString(Unknown Source) at java.lang.Float.parseFloat(Unknown Source) at loci.formats.in.MetamorphHandler.checkKey(MetamorphHandler.java:208) at loci.formats.in.MetamorphHandler.startElement(MetamorphHandler.java:136) at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.startElement(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanStartElement(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl$FragmentContentDriver.next(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(Unknown Source) at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl$JAXPSAXParser.parse(Unknown Source) at javax.xml.parsers.SAXParser.parse(Unknown Source) at javax.xml.parsers.SAXParser.parse(Unknown Source) at loci.common.XMLTools.parseXML(XMLTools.java:277) at loci.common.XMLTools.parseXML(XMLTools.java:252) at loci.formats.in.MetamorphTiffReader.initFile(MetamorphTiffReader.java:86) at loci.formats.FormatReader.setId(FormatReader.java:901) at loci.formats.ImageReader.setId(ImageReader.java:588) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at loci.formats.ChannelFiller.setId(ChannelFiller.java:179) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:205) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at ome.formats.importer.ImportLibrary.open(ImportLibrary.java:213) at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:344) at ome.formats.importer.gui.ImportHandler.importImages(ImportHandler.java:182) at ome.formats.importer.gui.ImportHandler.access$100(ImportHandler.java:45) at ome.formats.importer.gui.ImportHandler$2.run(ImportHandler.java:97) at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source) at java.util.concurrent.FutureTask$Sync.innerRun(Unknown Source) at java.util.concurrent.FutureTask.run(Unknown Source) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(Unknown Source) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) at java.lang.Thread.run(Unknown Source) java.lang.NumberFormatException: For input string: "Red" at sun.misc.FloatingDecimal.readJavaFormatString(Unknown Source) at java.lang.Float.parseFloat(Unknown Source) at loci.formats.in.MetamorphHandler.checkKey(MetamorphHandler.java:208) at loci.formats.in.MetamorphHandler.startElement(MetamorphHandler.java:136) at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.startElement(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanStartElement(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl$FragmentContentDriver.next(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(Unknown Source) at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl$JAXPSAXParser.parse(Unknown Source) at javax.xml.parsers.SAXParser.parse(Unknown Source) at javax.xml.parsers.SAXParser.parse(Unknown Source) at loci.common.XMLTools.parseXML(XMLTools.java:277) at loci.common.XMLTools.parseXML(XMLTools.java:252) at loci.formats.in.MetamorphTiffReader.initFile(MetamorphTiffReader.java:86) at loci.formats.FormatReader.setId(FormatReader.java:901) at loci.formats.ImageReader.setId(ImageReader.java:588) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at loci.formats.ChannelFiller.setId(ChannelFiller.java:179) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:205) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at ome.formats.importer.ImportLibrary.open(ImportLibrary.java:213) at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:344) at ome.formats.importer.gui.ImportHandler.importImages(ImportHandler.java:182) at ome.formats.importer.gui.ImportHandler.access$100(ImportHandler.java:45) at ome.formats.importer.gui.ImportHandler$2.run(ImportHandler.java:97) at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source) at java.util.concurrent.FutureTask$Sync.innerRun(Unknown Source) at java.util.concurrent.FutureTask.run(Unknown Source) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(Unknown Source) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) at java.lang.Thread.run(Unknown Source) 2010-03-15 16:05:53,498 887315 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - LOADING_IMAGE: 090924_sl2_s11_af_w1_s5_t1.TIF 2010-03-15 16:05:54,279 888096 [4-thread-1] DEBUG ome.formats.OMEROMetadataStoreClient - KeepAlive ping 2010-03-15 16:05:54,467 888284 [2-thread-1] DEBUG ome.formats.OMEROMetadataStoreClient - Creating root! 2010-03-15 16:05:54,482 888299 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - BIOFORMATS_STATUS: Reading IFDs 2010-03-15 16:05:54,482 888299 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - BIOFORMATS_STATUS: Reading IFDs 2010-03-15 16:05:54,482 888299 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - BIOFORMATS_STATUS: Reading IFDs 2010-03-15 16:05:54,514 888331 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - BIOFORMATS_STATUS: Populating metadata 2010-03-15 16:05:54,514 888331 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - BIOFORMATS_STATUS: Populating metadata 2010-03-15 16:05:54,514 888331 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - BIOFORMATS_STATUS: Populating metadata 2010-03-15 16:05:54,529 888346 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - BIOFORMATS_STATUS: Populating OME metadata 2010-03-15 16:05:54,529 888346 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - BIOFORMATS_STATUS: Populating OME metadata 2010-03-15 16:05:54,529 888346 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - BIOFORMATS_STATUS: Populating OME metadata 2010-03-15 16:05:54,545 888362 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - INTERNAL_EXCEPTION: T:\OMERO\test_images\2_Axiophot\090925_sl2_section11\090924_sl2_s11_af_w1_s5_t1.TIF java.lang.NumberFormatException: For input string: "Red" at sun.misc.FloatingDecimal.readJavaFormatString(Unknown Source) at java.lang.Float.parseFloat(Unknown Source) at loci.formats.in.MetamorphHandler.checkKey(MetamorphHandler.java:208) at loci.formats.in.MetamorphHandler.startElement(MetamorphHandler.java:136) at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.startElement(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanStartElement(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl$FragmentContentDriver.next(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(Unknown Source) at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl$JAXPSAXParser.parse(Unknown Source) at javax.xml.parsers.SAXParser.parse(Unknown Source) at javax.xml.parsers.SAXParser.parse(Unknown Source) at loci.common.XMLTools.parseXML(XMLTools.java:277) at loci.common.XMLTools.parseXML(XMLTools.java:252) at loci.formats.in.MetamorphTiffReader.initFile(MetamorphTiffReader.java:86) at loci.formats.FormatReader.setId(FormatReader.java:901) at loci.formats.ImageReader.setId(ImageReader.java:588) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at loci.formats.ChannelFiller.setId(ChannelFiller.java:179) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:205) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at ome.formats.importer.ImportLibrary.open(ImportLibrary.java:213) at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:344) at ome.formats.importer.gui.ImportHandler.importImages(ImportHandler.java:182) at ome.formats.importer.gui.ImportHandler.access$100(ImportHandler.java:45) at ome.formats.importer.gui.ImportHandler$2.run(ImportHandler.java:97) at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source) at java.util.concurrent.FutureTask$Sync.innerRun(Unknown Source) at java.util.concurrent.FutureTask.run(Unknown Source) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(Unknown Source) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) at java.lang.Thread.run(Unknown Source) 2010-03-15 16:05:54,545 888362 [2-thread-1] ERROR ome.formats.importer.gui.GuiImporter - EXCEPTION_EVENT 2010-03-15 16:05:54,545 888362 [2-thread-1] ERROR importer.gui.ErrorHandler$MyErrorHandler - INTERNAL_EXCEPTION: T:\OMERO\test_images\2_Axiophot\090925_sl2_section11\090924_sl2_s11_af_w1_s5_t1.TIF java.lang.NumberFormatException: For input string: "Red" at sun.misc.FloatingDecimal.readJavaFormatString(Unknown Source) at java.lang.Float.parseFloat(Unknown Source) at loci.formats.in.MetamorphHandler.checkKey(MetamorphHandler.java:208) at loci.formats.in.MetamorphHandler.startElement(MetamorphHandler.java:136) at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.startElement(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanStartElement(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl$FragmentContentDriver.next(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(Unknown Source) at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl$JAXPSAXParser.parse(Unknown Source) at javax.xml.parsers.SAXParser.parse(Unknown Source) at javax.xml.parsers.SAXParser.parse(Unknown Source) at loci.common.XMLTools.parseXML(XMLTools.java:277) at loci.common.XMLTools.parseXML(XMLTools.java:252) at loci.formats.in.MetamorphTiffReader.initFile(MetamorphTiffReader.java:86) at loci.formats.FormatReader.setId(FormatReader.java:901) at loci.formats.ImageReader.setId(ImageReader.java:588) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at loci.formats.ChannelFiller.setId(ChannelFiller.java:179) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:205) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at ome.formats.importer.ImportLibrary.open(ImportLibrary.java:213) at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:344) at ome.formats.importer.gui.ImportHandler.importImages(ImportHandler.java:182) at ome.formats.importer.gui.ImportHandler.access$100(ImportHandler.java:45) at ome.formats.importer.gui.ImportHandler$2.run(ImportHandler.java:97) at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source) at java.util.concurrent.FutureTask$Sync.innerRun(Unknown Source) at java.util.concurrent.FutureTask.run(Unknown Source) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(Unknown Source) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) at java.lang.Thread.run(Unknown Source) 2010-03-15 16:05:54,560 888377 [2-thread-1] ERROR e.formats.importer.gui.GuiCommonElements - Couldn't find icon: null 2010-03-15 16:05:54,560 888377 [2-thread-1] ERROR e.formats.importer.gui.GuiCommonElements - Couldn't find icon: null 2010-03-15 16:05:54,576 888393 [2-thread-1] DEBUG ome.formats.OMEROMetadataStoreClient - Creating root! 2010-03-15 16:05:54,576 888393 [2-thread-1] ERROR ome.formats.importer.gui.ImportHandler - Generic error while importing image. 2010-03-15 16:05:54,592 888409 [2-thread-1] DEBUG ome.formats.importer.gui.GuiImporter - java.lang.NumberFormatException: For input string: "Red" at sun.misc.FloatingDecimal.readJavaFormatString(Unknown Source) at java.lang.Float.parseFloat(Unknown Source) at loci.formats.in.MetamorphHandler.checkKey(MetamorphHandler.java:208) at loci.formats.in.MetamorphHandler.startElement(MetamorphHandler.java:136) at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.startElement(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanStartElement(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl$FragmentContentDriver.next(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(Unknown Source) at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl$JAXPSAXParser.parse(Unknown Source) at javax.xml.parsers.SAXParser.parse(Unknown Source) at javax.xml.parsers.SAXParser.parse(Unknown Source) at loci.common.XMLTools.parseXML(XMLTools.java:277) at loci.common.XMLTools.parseXML(XMLTools.java:252) at loci.formats.in.MetamorphTiffReader.initFile(MetamorphTiffReader.java:86) at loci.formats.FormatReader.setId(FormatReader.java:901) at loci.formats.ImageReader.setId(ImageReader.java:588) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at loci.formats.ChannelFiller.setId(ChannelFiller.java:179) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:205) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at ome.formats.importer.ImportLibrary.open(ImportLibrary.java:213) at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:344) at ome.formats.importer.gui.ImportHandler.importImages(ImportHandler.java:182) at ome.formats.importer.gui.ImportHandler.access$100(ImportHandler.java:45) at ome.formats.importer.gui.ImportHandler$2.run(ImportHandler.java:97) at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source) at java.util.concurrent.FutureTask$Sync.innerRun(Unknown Source) at java.util.concurrent.FutureTask.run(Unknown Source) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(Unknown Source) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) at java.lang.Thread.run(Unknown Source) java.lang.NumberFormatException: For input string: "Red" at sun.misc.FloatingDecimal.readJavaFormatString(Unknown Source) at java.lang.Float.parseFloat(Unknown Source) at loci.formats.in.MetamorphHandler.checkKey(MetamorphHandler.java:208) at loci.formats.in.MetamorphHandler.startElement(MetamorphHandler.java:136) at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.startElement(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanStartElement(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl$FragmentContentDriver.next(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(Unknown Source) at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl$JAXPSAXParser.parse(Unknown Source) at javax.xml.parsers.SAXParser.parse(Unknown Source) at javax.xml.parsers.SAXParser.parse(Unknown Source) at loci.common.XMLTools.parseXML(XMLTools.java:277) at loci.common.XMLTools.parseXML(XMLTools.java:252) at loci.formats.in.MetamorphTiffReader.initFile(MetamorphTiffReader.java:86) at loci.formats.FormatReader.setId(FormatReader.java:901) at loci.formats.ImageReader.setId(ImageReader.java:588) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at loci.formats.ChannelFiller.setId(ChannelFiller.java:179) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:205) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at ome.formats.importer.ImportLibrary.open(ImportLibrary.java:213) at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:344) at ome.formats.importer.gui.ImportHandler.importImages(ImportHandler.java:182) at ome.formats.importer.gui.ImportHandler.access$100(ImportHandler.java:45) at ome.formats.importer.gui.ImportHandler$2.run(ImportHandler.java:97) at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source) at java.util.concurrent.FutureTask$Sync.innerRun(Unknown Source) at java.util.concurrent.FutureTask.run(Unknown Source) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(Unknown Source) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) at java.lang.Thread.run(Unknown Source) 2010-03-15 16:05:54,607 888424 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - LOADING_IMAGE: 090924_sl2_s11_af_w1_s6_t1.TIF 2010-03-15 16:05:55,451 889268 [2-thread-1] DEBUG ome.formats.OMEROMetadataStoreClient - Creating root! 2010-03-15 16:05:55,467 889284 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - BIOFORMATS_STATUS: Reading IFDs 2010-03-15 16:05:55,467 889284 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - BIOFORMATS_STATUS: Reading IFDs 2010-03-15 16:05:55,467 889284 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - BIOFORMATS_STATUS: Reading IFDs 2010-03-15 16:05:55,498 889315 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - BIOFORMATS_STATUS: Populating metadata 2010-03-15 16:05:55,498 889315 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - BIOFORMATS_STATUS: Populating metadata 2010-03-15 16:05:55,498 889315 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - BIOFORMATS_STATUS: Populating metadata 2010-03-15 16:05:55,514 889331 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - BIOFORMATS_STATUS: Populating OME metadata 2010-03-15 16:05:55,514 889331 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - BIOFORMATS_STATUS: Populating OME metadata 2010-03-15 16:05:55,514 889331 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - BIOFORMATS_STATUS: Populating OME metadata 2010-03-15 16:05:55,529 889346 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - INTERNAL_EXCEPTION: T:\OMERO\test_images\2_Axiophot\090925_sl2_section11\090924_sl2_s11_af_w1_s6_t1.TIF java.lang.NumberFormatException: For input string: "Red" at sun.misc.FloatingDecimal.readJavaFormatString(Unknown Source) at java.lang.Float.parseFloat(Unknown Source) at loci.formats.in.MetamorphHandler.checkKey(MetamorphHandler.java:208) at loci.formats.in.MetamorphHandler.startElement(MetamorphHandler.java:136) at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.startElement(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanStartElement(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl$FragmentContentDriver.next(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(Unknown Source) at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl$JAXPSAXParser.parse(Unknown Source) at javax.xml.parsers.SAXParser.parse(Unknown Source) at javax.xml.parsers.SAXParser.parse(Unknown Source) at loci.common.XMLTools.parseXML(XMLTools.java:277) at loci.common.XMLTools.parseXML(XMLTools.java:252) at loci.formats.in.MetamorphTiffReader.initFile(MetamorphTiffReader.java:86) at loci.formats.FormatReader.setId(FormatReader.java:901) at loci.formats.ImageReader.setId(ImageReader.java:588) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at loci.formats.ChannelFiller.setId(ChannelFiller.java:179) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:205) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at ome.formats.importer.ImportLibrary.open(ImportLibrary.java:213) at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:344) at ome.formats.importer.gui.ImportHandler.importImages(ImportHandler.java:182) at ome.formats.importer.gui.ImportHandler.access$100(ImportHandler.java:45) at ome.formats.importer.gui.ImportHandler$2.run(ImportHandler.java:97) at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source) at java.util.concurrent.FutureTask$Sync.innerRun(Unknown Source) at java.util.concurrent.FutureTask.run(Unknown Source) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(Unknown Source) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) at java.lang.Thread.run(Unknown Source) 2010-03-15 16:05:55,529 889346 [2-thread-1] ERROR ome.formats.importer.gui.GuiImporter - EXCEPTION_EVENT 2010-03-15 16:05:55,545 889362 [2-thread-1] ERROR importer.gui.ErrorHandler$MyErrorHandler - INTERNAL_EXCEPTION: T:\OMERO\test_images\2_Axiophot\090925_sl2_section11\090924_sl2_s11_af_w1_s6_t1.TIF java.lang.NumberFormatException: For input string: "Red" at sun.misc.FloatingDecimal.readJavaFormatString(Unknown Source) at java.lang.Float.parseFloat(Unknown Source) at loci.formats.in.MetamorphHandler.checkKey(MetamorphHandler.java:208) at loci.formats.in.MetamorphHandler.startElement(MetamorphHandler.java:136) at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.startElement(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanStartElement(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl$FragmentContentDriver.next(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(Unknown Source) at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl$JAXPSAXParser.parse(Unknown Source) at javax.xml.parsers.SAXParser.parse(Unknown Source) at javax.xml.parsers.SAXParser.parse(Unknown Source) at loci.common.XMLTools.parseXML(XMLTools.java:277) at loci.common.XMLTools.parseXML(XMLTools.java:252) at loci.formats.in.MetamorphTiffReader.initFile(MetamorphTiffReader.java:86) at loci.formats.FormatReader.setId(FormatReader.java:901) at loci.formats.ImageReader.setId(ImageReader.java:588) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at loci.formats.ChannelFiller.setId(ChannelFiller.java:179) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:205) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at ome.formats.importer.ImportLibrary.open(ImportLibrary.java:213) at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:344) at ome.formats.importer.gui.ImportHandler.importImages(ImportHandler.java:182) at ome.formats.importer.gui.ImportHandler.access$100(ImportHandler.java:45) at ome.formats.importer.gui.ImportHandler$2.run(ImportHandler.java:97) at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source) at java.util.concurrent.FutureTask$Sync.innerRun(Unknown Source) at java.util.concurrent.FutureTask.run(Unknown Source) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(Unknown Source) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) at java.lang.Thread.run(Unknown Source) 2010-03-15 16:05:55,545 889362 [2-thread-1] ERROR e.formats.importer.gui.GuiCommonElements - Couldn't find icon: null 2010-03-15 16:05:55,545 889362 [2-thread-1] ERROR e.formats.importer.gui.GuiCommonElements - Couldn't find icon: null 2010-03-15 16:05:55,560 889377 [2-thread-1] DEBUG ome.formats.OMEROMetadataStoreClient - Creating root! 2010-03-15 16:05:55,560 889377 [2-thread-1] ERROR ome.formats.importer.gui.ImportHandler - Generic error while importing image. 2010-03-15 16:05:55,576 889393 [2-thread-1] DEBUG ome.formats.importer.gui.GuiImporter - java.lang.NumberFormatException: For input string: "Red" at sun.misc.FloatingDecimal.readJavaFormatString(Unknown Source) at java.lang.Float.parseFloat(Unknown Source) at loci.formats.in.MetamorphHandler.checkKey(MetamorphHandler.java:208) at loci.formats.in.MetamorphHandler.startElement(MetamorphHandler.java:136) at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.startElement(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanStartElement(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl$FragmentContentDriver.next(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(Unknown Source) at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl$JAXPSAXParser.parse(Unknown Source) at javax.xml.parsers.SAXParser.parse(Unknown Source) at javax.xml.parsers.SAXParser.parse(Unknown Source) at loci.common.XMLTools.parseXML(XMLTools.java:277) at loci.common.XMLTools.parseXML(XMLTools.java:252) at loci.formats.in.MetamorphTiffReader.initFile(MetamorphTiffReader.java:86) at loci.formats.FormatReader.setId(FormatReader.java:901) at loci.formats.ImageReader.setId(ImageReader.java:588) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at loci.formats.ChannelFiller.setId(ChannelFiller.java:179) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:205) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at ome.formats.importer.ImportLibrary.open(ImportLibrary.java:213) at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:344) at ome.formats.importer.gui.ImportHandler.importImages(ImportHandler.java:182) at ome.formats.importer.gui.ImportHandler.access$100(ImportHandler.java:45) at ome.formats.importer.gui.ImportHandler$2.run(ImportHandler.java:97) at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source) at java.util.concurrent.FutureTask$Sync.innerRun(Unknown Source) at java.util.concurrent.FutureTask.run(Unknown Source) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(Unknown Source) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) at java.lang.Thread.run(Unknown Source) java.lang.NumberFormatException: For input string: "Red" at sun.misc.FloatingDecimal.readJavaFormatString(Unknown Source) at java.lang.Float.parseFloat(Unknown Source) at loci.formats.in.MetamorphHandler.checkKey(MetamorphHandler.java:208) at loci.formats.in.MetamorphHandler.startElement(MetamorphHandler.java:136) at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.startElement(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanStartElement(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl$FragmentContentDriver.next(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(Unknown Source) at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl$JAXPSAXParser.parse(Unknown Source) at javax.xml.parsers.SAXParser.parse(Unknown Source) at javax.xml.parsers.SAXParser.parse(Unknown Source) at loci.common.XMLTools.parseXML(XMLTools.java:277) at loci.common.XMLTools.parseXML(XMLTools.java:252) at loci.formats.in.MetamorphTiffReader.initFile(MetamorphTiffReader.java:86) at loci.formats.FormatReader.setId(FormatReader.java:901) at loci.formats.ImageReader.setId(ImageReader.java:588) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at loci.formats.ChannelFiller.setId(ChannelFiller.java:179) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:205) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at ome.formats.importer.ImportLibrary.open(ImportLibrary.java:213) at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:344) at ome.formats.importer.gui.ImportHandler.importImages(ImportHandler.java:182) at ome.formats.importer.gui.ImportHandler.access$100(ImportHandler.java:45) at ome.formats.importer.gui.ImportHandler$2.run(ImportHandler.java:97) at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source) at java.util.concurrent.FutureTask$Sync.innerRun(Unknown Source) at java.util.concurrent.FutureTask.run(Unknown Source) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(Unknown Source) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) at java.lang.Thread.run(Unknown Source) 2010-03-15 16:05:55,592 889409 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - LOADING_IMAGE: 090924_sl2_s11_af_w1_s7_t1.TIF 2010-03-15 16:05:56,404 890221 [2-thread-1] DEBUG ome.formats.OMEROMetadataStoreClient - Creating root! 2010-03-15 16:05:56,420 890237 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - BIOFORMATS_STATUS: Reading IFDs 2010-03-15 16:05:56,420 890237 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - BIOFORMATS_STATUS: Reading IFDs 2010-03-15 16:05:56,420 890237 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - BIOFORMATS_STATUS: Reading IFDs 2010-03-15 16:05:56,435 890252 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - BIOFORMATS_STATUS: Populating metadata 2010-03-15 16:05:56,435 890252 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - BIOFORMATS_STATUS: Populating metadata 2010-03-15 16:05:56,451 890268 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - BIOFORMATS_STATUS: Populating metadata 2010-03-15 16:05:56,451 890268 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - BIOFORMATS_STATUS: Populating OME metadata 2010-03-15 16:05:56,451 890268 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - BIOFORMATS_STATUS: Populating OME metadata 2010-03-15 16:05:56,467 890284 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - BIOFORMATS_STATUS: Populating OME metadata 2010-03-15 16:05:56,467 890284 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - INTERNAL_EXCEPTION: T:\OMERO\test_images\2_Axiophot\090925_sl2_section11\090924_sl2_s11_af_w1_s7_t1.TIF java.lang.NumberFormatException: For input string: "Red" at sun.misc.FloatingDecimal.readJavaFormatString(Unknown Source) at java.lang.Float.parseFloat(Unknown Source) at loci.formats.in.MetamorphHandler.checkKey(MetamorphHandler.java:208) at loci.formats.in.MetamorphHandler.startElement(MetamorphHandler.java:136) at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.startElement(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanStartElement(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl$FragmentContentDriver.next(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(Unknown Source) at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl$JAXPSAXParser.parse(Unknown Source) at javax.xml.parsers.SAXParser.parse(Unknown Source) at javax.xml.parsers.SAXParser.parse(Unknown Source) at loci.common.XMLTools.parseXML(XMLTools.java:277) at loci.common.XMLTools.parseXML(XMLTools.java:252) at loci.formats.in.MetamorphTiffReader.initFile(MetamorphTiffReader.java:86) at loci.formats.FormatReader.setId(FormatReader.java:901) at loci.formats.ImageReader.setId(ImageReader.java:588) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at loci.formats.ChannelFiller.setId(ChannelFiller.java:179) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:205) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at ome.formats.importer.ImportLibrary.open(ImportLibrary.java:213) at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:344) at ome.formats.importer.gui.ImportHandler.importImages(ImportHandler.java:182) at ome.formats.importer.gui.ImportHandler.access$100(ImportHandler.java:45) at ome.formats.importer.gui.ImportHandler$2.run(ImportHandler.java:97) at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source) at java.util.concurrent.FutureTask$Sync.innerRun(Unknown Source) at java.util.concurrent.FutureTask.run(Unknown Source) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(Unknown Source) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) at java.lang.Thread.run(Unknown Source) 2010-03-15 16:05:56,482 890299 [2-thread-1] ERROR ome.formats.importer.gui.GuiImporter - EXCEPTION_EVENT 2010-03-15 16:05:56,482 890299 [2-thread-1] ERROR importer.gui.ErrorHandler$MyErrorHandler - INTERNAL_EXCEPTION: T:\OMERO\test_images\2_Axiophot\090925_sl2_section11\090924_sl2_s11_af_w1_s7_t1.TIF java.lang.NumberFormatException: For input string: "Red" at sun.misc.FloatingDecimal.readJavaFormatString(Unknown Source) at java.lang.Float.parseFloat(Unknown Source) at loci.formats.in.MetamorphHandler.checkKey(MetamorphHandler.java:208) at loci.formats.in.MetamorphHandler.startElement(MetamorphHandler.java:136) at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.startElement(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanStartElement(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl$FragmentContentDriver.next(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(Unknown Source) at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl$JAXPSAXParser.parse(Unknown Source) at javax.xml.parsers.SAXParser.parse(Unknown Source) at javax.xml.parsers.SAXParser.parse(Unknown Source) at loci.common.XMLTools.parseXML(XMLTools.java:277) at loci.common.XMLTools.parseXML(XMLTools.java:252) at loci.formats.in.MetamorphTiffReader.initFile(MetamorphTiffReader.java:86) at loci.formats.FormatReader.setId(FormatReader.java:901) at loci.formats.ImageReader.setId(ImageReader.java:588) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at loci.formats.ChannelFiller.setId(ChannelFiller.java:179) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:205) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at ome.formats.importer.ImportLibrary.open(ImportLibrary.java:213) at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:344) at ome.formats.importer.gui.ImportHandler.importImages(ImportHandler.java:182) at ome.formats.importer.gui.ImportHandler.access$100(ImportHandler.java:45) at ome.formats.importer.gui.ImportHandler$2.run(ImportHandler.java:97) at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source) at java.util.concurrent.FutureTask$Sync.innerRun(Unknown Source) at java.util.concurrent.FutureTask.run(Unknown Source) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(Unknown Source) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) at java.lang.Thread.run(Unknown Source) 2010-03-15 16:05:56,592 890409 [2-thread-1] ERROR e.formats.importer.gui.GuiCommonElements - Couldn't find icon: null 2010-03-15 16:05:56,592 890409 [2-thread-1] ERROR e.formats.importer.gui.GuiCommonElements - Couldn't find icon: null 2010-03-15 16:05:56,592 890409 [2-thread-1] DEBUG ome.formats.OMEROMetadataStoreClient - Creating root! 2010-03-15 16:05:56,607 890424 [2-thread-1] ERROR ome.formats.importer.gui.ImportHandler - Generic error while importing image. 2010-03-15 16:05:56,607 890424 [2-thread-1] DEBUG ome.formats.importer.gui.GuiImporter - java.lang.NumberFormatException: For input string: "Red" at sun.misc.FloatingDecimal.readJavaFormatString(Unknown Source) at java.lang.Float.parseFloat(Unknown Source) at loci.formats.in.MetamorphHandler.checkKey(MetamorphHandler.java:208) at loci.formats.in.MetamorphHandler.startElement(MetamorphHandler.java:136) at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.startElement(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanStartElement(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl$FragmentContentDriver.next(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(Unknown Source) at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl$JAXPSAXParser.parse(Unknown Source) at javax.xml.parsers.SAXParser.parse(Unknown Source) at javax.xml.parsers.SAXParser.parse(Unknown Source) at loci.common.XMLTools.parseXML(XMLTools.java:277) at loci.common.XMLTools.parseXML(XMLTools.java:252) at loci.formats.in.MetamorphTiffReader.initFile(MetamorphTiffReader.java:86) at loci.formats.FormatReader.setId(FormatReader.java:901) at loci.formats.ImageReader.setId(ImageReader.java:588) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at loci.formats.ChannelFiller.setId(ChannelFiller.java:179) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:205) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at ome.formats.importer.ImportLibrary.open(ImportLibrary.java:213) at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:344) at ome.formats.importer.gui.ImportHandler.importImages(ImportHandler.java:182) at ome.formats.importer.gui.ImportHandler.access$100(ImportHandler.java:45) at ome.formats.importer.gui.ImportHandler$2.run(ImportHandler.java:97) at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source) at java.util.concurrent.FutureTask$Sync.innerRun(Unknown Source) at java.util.concurrent.FutureTask.run(Unknown Source) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(Unknown Source) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) at java.lang.Thread.run(Unknown Source) java.lang.NumberFormatException: For input string: "Red" at sun.misc.FloatingDecimal.readJavaFormatString(Unknown Source) at java.lang.Float.parseFloat(Unknown Source) at loci.formats.in.MetamorphHandler.checkKey(MetamorphHandler.java:208) at loci.formats.in.MetamorphHandler.startElement(MetamorphHandler.java:136) at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.startElement(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanStartElement(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl$FragmentContentDriver.next(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(Unknown Source) at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl$JAXPSAXParser.parse(Unknown Source) at javax.xml.parsers.SAXParser.parse(Unknown Source) at javax.xml.parsers.SAXParser.parse(Unknown Source) at loci.common.XMLTools.parseXML(XMLTools.java:277) at loci.common.XMLTools.parseXML(XMLTools.java:252) at loci.formats.in.MetamorphTiffReader.initFile(MetamorphTiffReader.java:86) at loci.formats.FormatReader.setId(FormatReader.java:901) at loci.formats.ImageReader.setId(ImageReader.java:588) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at loci.formats.ChannelFiller.setId(ChannelFiller.java:179) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:205) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at ome.formats.importer.ImportLibrary.open(ImportLibrary.java:213) at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:344) at ome.formats.importer.gui.ImportHandler.importImages(ImportHandler.java:182) at ome.formats.importer.gui.ImportHandler.access$100(ImportHandler.java:45) at ome.formats.importer.gui.ImportHandler$2.run(ImportHandler.java:97) at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source) at java.util.concurrent.FutureTask$Sync.innerRun(Unknown Source) at java.util.concurrent.FutureTask.run(Unknown Source) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(Unknown Source) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) at java.lang.Thread.run(Unknown Source) 2010-03-15 16:05:56,623 890440 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - LOADING_IMAGE: 090924_sl2_s11_af_w1_s8_t1.TIF 2010-03-15 16:05:57,357 891174 [2-thread-1] DEBUG ome.formats.OMEROMetadataStoreClient - Creating root! 2010-03-15 16:05:57,373 891190 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - BIOFORMATS_STATUS: Reading IFDs 2010-03-15 16:05:57,389 891206 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - BIOFORMATS_STATUS: Reading IFDs 2010-03-15 16:05:57,389 891206 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - BIOFORMATS_STATUS: Reading IFDs 2010-03-15 16:05:57,404 891221 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - BIOFORMATS_STATUS: Populating metadata 2010-03-15 16:05:57,404 891221 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - BIOFORMATS_STATUS: Populating metadata 2010-03-15 16:05:57,404 891221 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - BIOFORMATS_STATUS: Populating metadata 2010-03-15 16:05:57,420 891237 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - BIOFORMATS_STATUS: Populating OME metadata 2010-03-15 16:05:57,420 891237 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - BIOFORMATS_STATUS: Populating OME metadata 2010-03-15 16:05:57,436 891253 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - BIOFORMATS_STATUS: Populating OME metadata 2010-03-15 16:05:57,436 891253 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - INTERNAL_EXCEPTION: T:\OMERO\test_images\2_Axiophot\090925_sl2_section11\090924_sl2_s11_af_w1_s8_t1.TIF java.lang.NumberFormatException: For input string: "Red" at sun.misc.FloatingDecimal.readJavaFormatString(Unknown Source) at java.lang.Float.parseFloat(Unknown Source) at loci.formats.in.MetamorphHandler.checkKey(MetamorphHandler.java:208) at loci.formats.in.MetamorphHandler.startElement(MetamorphHandler.java:136) at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.startElement(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanStartElement(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl$FragmentContentDriver.next(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(Unknown Source) at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl$JAXPSAXParser.parse(Unknown Source) at javax.xml.parsers.SAXParser.parse(Unknown Source) at javax.xml.parsers.SAXParser.parse(Unknown Source) at loci.common.XMLTools.parseXML(XMLTools.java:277) at loci.common.XMLTools.parseXML(XMLTools.java:252) at loci.formats.in.MetamorphTiffReader.initFile(MetamorphTiffReader.java:86) at loci.formats.FormatReader.setId(FormatReader.java:901) at loci.formats.ImageReader.setId(ImageReader.java:588) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at loci.formats.ChannelFiller.setId(ChannelFiller.java:179) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:205) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at ome.formats.importer.ImportLibrary.open(ImportLibrary.java:213) at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:344) at ome.formats.importer.gui.ImportHandler.importImages(ImportHandler.java:182) at ome.formats.importer.gui.ImportHandler.access$100(ImportHandler.java:45) at ome.formats.importer.gui.ImportHandler$2.run(ImportHandler.java:97) at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source) at java.util.concurrent.FutureTask$Sync.innerRun(Unknown Source) at java.util.concurrent.FutureTask.run(Unknown Source) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(Unknown Source) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) at java.lang.Thread.run(Unknown Source) 2010-03-15 16:05:57,436 891253 [2-thread-1] ERROR ome.formats.importer.gui.GuiImporter - EXCEPTION_EVENT 2010-03-15 16:05:57,451 891268 [2-thread-1] ERROR importer.gui.ErrorHandler$MyErrorHandler - INTERNAL_EXCEPTION: T:\OMERO\test_images\2_Axiophot\090925_sl2_section11\090924_sl2_s11_af_w1_s8_t1.TIF java.lang.NumberFormatException: For input string: "Red" at sun.misc.FloatingDecimal.readJavaFormatString(Unknown Source) at java.lang.Float.parseFloat(Unknown Source) at loci.formats.in.MetamorphHandler.checkKey(MetamorphHandler.java:208) at loci.formats.in.MetamorphHandler.startElement(MetamorphHandler.java:136) at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.startElement(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanStartElement(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl$FragmentContentDriver.next(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(Unknown Source) at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl$JAXPSAXParser.parse(Unknown Source) at javax.xml.parsers.SAXParser.parse(Unknown Source) at javax.xml.parsers.SAXParser.parse(Unknown Source) at loci.common.XMLTools.parseXML(XMLTools.java:277) at loci.common.XMLTools.parseXML(XMLTools.java:252) at loci.formats.in.MetamorphTiffReader.initFile(MetamorphTiffReader.java:86) at loci.formats.FormatReader.setId(FormatReader.java:901) at loci.formats.ImageReader.setId(ImageReader.java:588) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at loci.formats.ChannelFiller.setId(ChannelFiller.java:179) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:205) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at ome.formats.importer.ImportLibrary.open(ImportLibrary.java:213) at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:344) at ome.formats.importer.gui.ImportHandler.importImages(ImportHandler.java:182) at ome.formats.importer.gui.ImportHandler.access$100(ImportHandler.java:45) at ome.formats.importer.gui.ImportHandler$2.run(ImportHandler.java:97) at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source) at java.util.concurrent.FutureTask$Sync.innerRun(Unknown Source) at java.util.concurrent.FutureTask.run(Unknown Source) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(Unknown Source) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) at java.lang.Thread.run(Unknown Source) 2010-03-15 16:05:57,451 891268 [2-thread-1] ERROR e.formats.importer.gui.GuiCommonElements - Couldn't find icon: null 2010-03-15 16:05:57,467 891284 [2-thread-1] ERROR e.formats.importer.gui.GuiCommonElements - Couldn't find icon: null 2010-03-15 16:05:57,467 891284 [2-thread-1] DEBUG ome.formats.OMEROMetadataStoreClient - Creating root! 2010-03-15 16:05:57,482 891299 [2-thread-1] ERROR ome.formats.importer.gui.ImportHandler - Generic error while importing image. 2010-03-15 16:05:57,482 891299 [2-thread-1] DEBUG ome.formats.importer.gui.GuiImporter - java.lang.NumberFormatException: For input string: "Red" at sun.misc.FloatingDecimal.readJavaFormatString(Unknown Source) at java.lang.Float.parseFloat(Unknown Source) at loci.formats.in.MetamorphHandler.checkKey(MetamorphHandler.java:208) at loci.formats.in.MetamorphHandler.startElement(MetamorphHandler.java:136) at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.startElement(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanStartElement(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl$FragmentContentDriver.next(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(Unknown Source) at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl$JAXPSAXParser.parse(Unknown Source) at javax.xml.parsers.SAXParser.parse(Unknown Source) at javax.xml.parsers.SAXParser.parse(Unknown Source) at loci.common.XMLTools.parseXML(XMLTools.java:277) at loci.common.XMLTools.parseXML(XMLTools.java:252) at loci.formats.in.MetamorphTiffReader.initFile(MetamorphTiffReader.java:86) at loci.formats.FormatReader.setId(FormatReader.java:901) at loci.formats.ImageReader.setId(ImageReader.java:588) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at loci.formats.ChannelFiller.setId(ChannelFiller.java:179) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:205) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at ome.formats.importer.ImportLibrary.open(ImportLibrary.java:213) at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:344) at ome.formats.importer.gui.ImportHandler.importImages(ImportHandler.java:182) at ome.formats.importer.gui.ImportHandler.access$100(ImportHandler.java:45) at ome.formats.importer.gui.ImportHandler$2.run(ImportHandler.java:97) at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source) at java.util.concurrent.FutureTask$Sync.innerRun(Unknown Source) at java.util.concurrent.FutureTask.run(Unknown Source) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(Unknown Source) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) at java.lang.Thread.run(Unknown Source) java.lang.NumberFormatException: For input string: "Red" at sun.misc.FloatingDecimal.readJavaFormatString(Unknown Source) at java.lang.Float.parseFloat(Unknown Source) at loci.formats.in.MetamorphHandler.checkKey(MetamorphHandler.java:208) at loci.formats.in.MetamorphHandler.startElement(MetamorphHandler.java:136) at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.startElement(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanStartElement(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl$FragmentContentDriver.next(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(Unknown Source) at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl$JAXPSAXParser.parse(Unknown Source) at javax.xml.parsers.SAXParser.parse(Unknown Source) at javax.xml.parsers.SAXParser.parse(Unknown Source) at loci.common.XMLTools.parseXML(XMLTools.java:277) at loci.common.XMLTools.parseXML(XMLTools.java:252) at loci.formats.in.MetamorphTiffReader.initFile(MetamorphTiffReader.java:86) at loci.formats.FormatReader.setId(FormatReader.java:901) at loci.formats.ImageReader.setId(ImageReader.java:588) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at loci.formats.ChannelFiller.setId(ChannelFiller.java:179) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:205) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at ome.formats.importer.ImportLibrary.open(ImportLibrary.java:213) at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:344) at ome.formats.importer.gui.ImportHandler.importImages(ImportHandler.java:182) at ome.formats.importer.gui.ImportHandler.access$100(ImportHandler.java:45) at ome.formats.importer.gui.ImportHandler$2.run(ImportHandler.java:97) at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source) at java.util.concurrent.FutureTask$Sync.innerRun(Unknown Source) at java.util.concurrent.FutureTask.run(Unknown Source) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(Unknown Source) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) at java.lang.Thread.run(Unknown Source) 2010-03-15 16:05:57,514 891331 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - LOADING_IMAGE: 090924_sl2_s11_af_w1_s9_t1.TIF 2010-03-15 16:05:58,467 892284 [2-thread-1] DEBUG ome.formats.OMEROMetadataStoreClient - Creating root! 2010-03-15 16:05:58,482 892299 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - BIOFORMATS_STATUS: Reading IFDs 2010-03-15 16:05:58,482 892299 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - BIOFORMATS_STATUS: Reading IFDs 2010-03-15 16:05:58,482 892299 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - BIOFORMATS_STATUS: Reading IFDs 2010-03-15 16:05:58,514 892331 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - BIOFORMATS_STATUS: Populating metadata 2010-03-15 16:05:58,514 892331 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - BIOFORMATS_STATUS: Populating metadata 2010-03-15 16:05:58,514 892331 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - BIOFORMATS_STATUS: Populating metadata 2010-03-15 16:05:58,529 892346 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - BIOFORMATS_STATUS: Populating OME metadata 2010-03-15 16:05:58,529 892346 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - BIOFORMATS_STATUS: Populating OME metadata 2010-03-15 16:05:58,545 892362 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - BIOFORMATS_STATUS: Populating OME metadata 2010-03-15 16:05:58,545 892362 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - INTERNAL_EXCEPTION: T:\OMERO\test_images\2_Axiophot\090925_sl2_section11\090924_sl2_s11_af_w1_s9_t1.TIF java.lang.NumberFormatException: For input string: "Red" at sun.misc.FloatingDecimal.readJavaFormatString(Unknown Source) at java.lang.Float.parseFloat(Unknown Source) at loci.formats.in.MetamorphHandler.checkKey(MetamorphHandler.java:208) at loci.formats.in.MetamorphHandler.startElement(MetamorphHandler.java:136) at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.startElement(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanStartElement(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl$FragmentContentDriver.next(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(Unknown Source) at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl$JAXPSAXParser.parse(Unknown Source) at javax.xml.parsers.SAXParser.parse(Unknown Source) at javax.xml.parsers.SAXParser.parse(Unknown Source) at loci.common.XMLTools.parseXML(XMLTools.java:277) at loci.common.XMLTools.parseXML(XMLTools.java:252) at loci.formats.in.MetamorphTiffReader.initFile(MetamorphTiffReader.java:86) at loci.formats.FormatReader.setId(FormatReader.java:901) at loci.formats.ImageReader.setId(ImageReader.java:588) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at loci.formats.ChannelFiller.setId(ChannelFiller.java:179) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:205) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at ome.formats.importer.ImportLibrary.open(ImportLibrary.java:213) at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:344) at ome.formats.importer.gui.ImportHandler.importImages(ImportHandler.java:182) at ome.formats.importer.gui.ImportHandler.access$100(ImportHandler.java:45) at ome.formats.importer.gui.ImportHandler$2.run(ImportHandler.java:97) at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source) at java.util.concurrent.FutureTask$Sync.innerRun(Unknown Source) at java.util.concurrent.FutureTask.run(Unknown Source) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(Unknown Source) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) at java.lang.Thread.run(Unknown Source) 2010-03-15 16:05:58,545 892362 [2-thread-1] ERROR ome.formats.importer.gui.GuiImporter - EXCEPTION_EVENT 2010-03-15 16:05:58,561 892378 [2-thread-1] ERROR importer.gui.ErrorHandler$MyErrorHandler - INTERNAL_EXCEPTION: T:\OMERO\test_images\2_Axiophot\090925_sl2_section11\090924_sl2_s11_af_w1_s9_t1.TIF java.lang.NumberFormatException: For input string: "Red" at sun.misc.FloatingDecimal.readJavaFormatString(Unknown Source) at java.lang.Float.parseFloat(Unknown Source) at loci.formats.in.MetamorphHandler.checkKey(MetamorphHandler.java:208) at loci.formats.in.MetamorphHandler.startElement(MetamorphHandler.java:136) at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.startElement(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanStartElement(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl$FragmentContentDriver.next(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(Unknown Source) at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl$JAXPSAXParser.parse(Unknown Source) at javax.xml.parsers.SAXParser.parse(Unknown Source) at javax.xml.parsers.SAXParser.parse(Unknown Source) at loci.common.XMLTools.parseXML(XMLTools.java:277) at loci.common.XMLTools.parseXML(XMLTools.java:252) at loci.formats.in.MetamorphTiffReader.initFile(MetamorphTiffReader.java:86) at loci.formats.FormatReader.setId(FormatReader.java:901) at loci.formats.ImageReader.setId(ImageReader.java:588) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at loci.formats.ChannelFiller.setId(ChannelFiller.java:179) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:205) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at ome.formats.importer.ImportLibrary.open(ImportLibrary.java:213) at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:344) at ome.formats.importer.gui.ImportHandler.importImages(ImportHandler.java:182) at ome.formats.importer.gui.ImportHandler.access$100(ImportHandler.java:45) at ome.formats.importer.gui.ImportHandler$2.run(ImportHandler.java:97) at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source) at java.util.concurrent.FutureTask$Sync.innerRun(Unknown Source) at java.util.concurrent.FutureTask.run(Unknown Source) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(Unknown Source) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) at java.lang.Thread.run(Unknown Source) 2010-03-15 16:05:58,576 892393 [2-thread-1] ERROR e.formats.importer.gui.GuiCommonElements - Couldn't find icon: null 2010-03-15 16:05:58,576 892393 [2-thread-1] ERROR e.formats.importer.gui.GuiCommonElements - Couldn't find icon: null 2010-03-15 16:05:58,576 892393 [2-thread-1] DEBUG ome.formats.OMEROMetadataStoreClient - Creating root! 2010-03-15 16:05:58,592 892409 [2-thread-1] ERROR ome.formats.importer.gui.ImportHandler - Generic error while importing image. 2010-03-15 16:05:58,592 892409 [2-thread-1] DEBUG ome.formats.importer.gui.GuiImporter - java.lang.NumberFormatException: For input string: "Red" at sun.misc.FloatingDecimal.readJavaFormatString(Unknown Source) at java.lang.Float.parseFloat(Unknown Source) at loci.formats.in.MetamorphHandler.checkKey(MetamorphHandler.java:208) at loci.formats.in.MetamorphHandler.startElement(MetamorphHandler.java:136) at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.startElement(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanStartElement(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl$FragmentContentDriver.next(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(Unknown Source) at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl$JAXPSAXParser.parse(Unknown Source) at javax.xml.parsers.SAXParser.parse(Unknown Source) at javax.xml.parsers.SAXParser.parse(Unknown Source) at loci.common.XMLTools.parseXML(XMLTools.java:277) at loci.common.XMLTools.parseXML(XMLTools.java:252) at loci.formats.in.MetamorphTiffReader.initFile(MetamorphTiffReader.java:86) at loci.formats.FormatReader.setId(FormatReader.java:901) at loci.formats.ImageReader.setId(ImageReader.java:588) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at loci.formats.ChannelFiller.setId(ChannelFiller.java:179) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:205) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at ome.formats.importer.ImportLibrary.open(ImportLibrary.java:213) at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:344) at ome.formats.importer.gui.ImportHandler.importImages(ImportHandler.java:182) at ome.formats.importer.gui.ImportHandler.access$100(ImportHandler.java:45) at ome.formats.importer.gui.ImportHandler$2.run(ImportHandler.java:97) at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source) at java.util.concurrent.FutureTask$Sync.innerRun(Unknown Source) at java.util.concurrent.FutureTask.run(Unknown Source) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(Unknown Source) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) at java.lang.Thread.run(Unknown Source) java.lang.NumberFormatException: For input string: "Red" at sun.misc.FloatingDecimal.readJavaFormatString(Unknown Source) at java.lang.Float.parseFloat(Unknown Source) at loci.formats.in.MetamorphHandler.checkKey(MetamorphHandler.java:208) at loci.formats.in.MetamorphHandler.startElement(MetamorphHandler.java:136) at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.startElement(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanStartElement(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl$FragmentContentDriver.next(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(Unknown Source) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(Unknown Source) at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(Unknown Source) at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl$JAXPSAXParser.parse(Unknown Source) at javax.xml.parsers.SAXParser.parse(Unknown Source) at javax.xml.parsers.SAXParser.parse(Unknown Source) at loci.common.XMLTools.parseXML(XMLTools.java:277) at loci.common.XMLTools.parseXML(XMLTools.java:252) at loci.formats.in.MetamorphTiffReader.initFile(MetamorphTiffReader.java:86) at loci.formats.FormatReader.setId(FormatReader.java:901) at loci.formats.ImageReader.setId(ImageReader.java:588) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at loci.formats.ChannelFiller.setId(ChannelFiller.java:179) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:205) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448) at ome.formats.importer.ImportLibrary.open(ImportLibrary.java:213) at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:344) at ome.formats.importer.gui.ImportHandler.importImages(ImportHandler.java:182) at ome.formats.importer.gui.ImportHandler.access$100(ImportHandler.java:45) at ome.formats.importer.gui.ImportHandler$2.run(ImportHandler.java:97) at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source) at java.util.concurrent.FutureTask$Sync.innerRun(Unknown Source) at java.util.concurrent.FutureTask.run(Unknown Source) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(Unknown Source) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) at java.lang.Thread.run(Unknown Source)