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Josh-<BR>
I'm having trouble getting 4.1.0 to startup and could use some advice.<BR>
Background: up-to-date FC11 box, new install of Omero using standard defaults. Startup times out after 5 minutes. Blitz-0.log complains:<BR>
<BR>
2009-10-29 12:41:40,747 INFO [ ome.services.blitz.Entry] ( main) Creatin<BR>
g OMERO.blitz. Please wait...<BR>
2009-10-29 12:41:42,493 WARN [ java.util.prefs] ( main) Could n<BR>
ot create system preferences directory. System preferences are unusable.<BR>
2009-10-29 12:41:42,506 WARN [ java.util.prefs] ( main) Prefs f<BR>
ile removed in background /usr/lib/jvm/java-1.6.0-openjdk-1.6.0.0.x86_64/jre/.systemPrefs/pre<BR>
fs.xml<BR>
2009-10-29 12:41:42,583 INFO [ng.ShutdownSafeEhcacheManagerFactoryBean] ( main) Initial<BR>
izing EHCache CacheManager<BR>
2009-10-29 12:41:46,408 INFO [ ome.services.fulltext.FullTextAnalyzer] ( main) Initial<BR>
ized FullTextAnalyzer<BR>
2009-10-29 12:41:53,908 INFO [ng.ShutdownSafeEhcacheManagerFactoryBean] ( main) Shuttin<BR>
g down EHCache CacheManager<BR>
2009-10-29 12:41:53,910 ERROR [ ome.services.blitz.Entry] ( main) Error o<BR>
n startup.<BR>
org.springframework.beans.factory.access.BootstrapException: Unable to return specified BeanF<BR>
actory instance: factory key [OMERO.blitz], from group with resource name [classpath*:beanRef<BR>
Context.xml]; nested exception is org.springframework.beans.factory.BeanCreationException: Er<BR>
ror creating bean with name 'OMERO.blitz' defined in URL [jar:<A HREF="file:/home/mrmike/Documents/ome">file:/home/mrmike/Documents/ome</A><BR>
ro-Beta4.1.0/lib/server/blitz.jar!/beanRefContext.xml]: Cannot resolve reference to bean 'ome<BR>
.server' while setting constructor argument; nested exception is org.springframework.beans.fa<BR>
ctory.BeanCreationException: Error creating bean with name 'ome.server' defined in URL [jar:f<BR>
ile:/home/mrmike/Documents/omero-Beta4.1.0/lib/server/server.jar!/beanRefContext.xml]: Instan<BR>
tiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationExcept<BR>
ion: Could not instantiate bean class [ome.system.OmeroContext]: Constructor threw exception;<BR>
nested exception is org.springframework.beans.factory.BeanCreationException: Error creating<BR>
bean with name 'sessionManager' defined in class path resource [ome/services/sec-primitives.x<BR>
ml]: Invocation of init method failed; nested exception is java.lang.RuntimeException: <BR>
=====================================================<BR>
Data access exception: Did you create your database?<BR>
=====================================================<BR>
<BR>
but the db is there and uses default name/pwd:<BR>
<BR>
[mrmike@cisrome omero-Beta4.1.0]$ psql -h localhost -U omero -l<BR>
List of databases<BR>
Name | Owner | Encoding<BR>
-----------+----------+----------<BR>
omero | omero | UTF8<BR>
postgres | postgres | UTF8<BR>
template0 | postgres | UTF8<BR>
template1 | postgres | UTF8<BR>
(4 rows)<BR>
<BR>
<BR>
The only oddity I can detect is the UTF-8 encoding. Could this be a problem?<BR>
Perhaps it's python - DropBox complains:<BR>
<BR>
2009-10-29 12:41:41,141 ERROR [ fsclient.DropBox] (MainThread) System<BR>
requirements not met:<BR>
Traceback (most recent call last):<BR>
File "lib/python/fsDropBox.py", line 66, in run<BR>
fsUtil.monitorPackage()<BR>
File "/home/mrmike/Documents/omero-Beta4.1.0/lib/python/fsUtil.py", line 117, in monitorPac<BR>
kage<BR>
raise Exception("Libraries required by OMERO.fs monitor unavailable: " + errorString)<BR>
Exception: Libraries required by OMERO.fs monitor unavailable: pynotify version 0.8.6 is not<BR>
compatible with Python 2.4. Install 0.8.5 or lower to use DropBox<BR>
2009-10-29 12:41:41,142 ERROR [ fsclient.DropBox] (MainThread) Quittin<BR>
g<BR>
2009-10-29 12:41:41,144 INFO [ fsclient.DropBox] (MainThread) Exiting<BR>
with exit code: -1<BR>
<BR>
<BR>
And diagnostics gives something weird for python:<BR>
<BR>
[mrmike@cisrome omero-Beta4.1.0]$ bin/omero admin diagnostics<BR>
<BR>
================================================================================<BR>
OMERO Diagnostics Beta-4.1.0-r5585-b12<BR>
================================================================================<BR>
<BR>
Commands: java -version 1.6.0 (/usr/bin/java)<BR>
Commands: python -V error:'NoneType' object has no attribute 'group'<BR>
Commands: icegridnode --version 3.3 (/usr/bin/icegridnode)<BR>
Commands: icegridadmin --version 3.3 (/usr/bin/icegridadmin)<BR>
Commands: psql --version 8.3.8 (/usr/bin/psql)<BR>
<BR>
Server: icegridnode running<BR>
Server: Blitz-0 inactive (disabled)<BR>
<BR>
But it is there, and version 2.6 not 2.4...<BR>
[mrmike@cisrome omero-Beta4.1.0]$ python -V<BR>
Python 2.6<BR>
<BR>
Meanwhile, master.err gives:<BR>
<BR>
10/29/09 12:41:55.572 OMERO.Glacier2: warning: unable to contact permissions verifier `BlitzV<BR>
erifier@BlitzAdapters'<BR>
Reference.cpp:1546: Ice::NoEndpointException:<BR>
no suitable endpoint available for proxy `BlitzVerifier -t @ BlitzAdapters'<BR>
10/29/09 12:41:55.573 OMERO.Glacier2: warning: unable to contact session manager `BlitzManage<BR>
r@BlitzAdapters'<BR>
Reference.cpp:1546: Ice::NoEndpointException:<BR>
no suitable endpoint available for proxy `BlitzManager -t @ BlitzAdapters'<BR>
Unhandled exception in thread started by<BR>
Error in sys.excepthook:<BR>
<BR>
Original exception was:<BR>
<BR>
<BR>
I haven't (yet) found another instance of python somewhere.<BR>
<BR>
So, do you have a suggestions at where to start?<BR>
<BR>
Thanks,<BR>
Mike<BR>
<BR>
Michael J. McCaughey, PhD<BR>
Molecular Physiology and Biophysics<BR>
U9203 MRBIII<BR>
6-6175<BR>
<BR>
<BR>
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