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<p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";
color:#1F497D'>It’s about 100MB, but same problem seems to affect upload
of (for example) multi-image-pixels.ome.tif from <a
href="http://www.loci.wisc.edu/ome/ome-tiff-data.html">http://www.loci.wisc.edu/ome/ome-tiff-data.html</a>
which is about 10MB so looks like a more general problem with some types of OME-TIFF.<o:p></o:p></span></p>
<p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";
color:#1F497D'><o:p> </o:p></span></p>
<p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";
color:#1F497D'>But, more generally, Beta4.1 is looking good – many thanks
to the OMERO developers! All our other file formats have uploaded successfully,
including some which have only been supported since this new release. Other
large files haven’t presented a problem either.<o:p></o:p></span></p>
<p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";
color:#1F497D'><o:p> </o:p></span></p>
<p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";
color:#1F497D'>Mark.<o:p></o:p></span></p>
<p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";
color:#1F497D'><o:p> </o:p></span></p>
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<p class=MsoNormal><b><span lang=EN-US style='font-size:10.0pt;font-family:
"Tahoma","sans-serif"'>From:</span></b><span lang=EN-US style='font-size:10.0pt;
font-family:"Tahoma","sans-serif"'> David Gutman [mailto:dagutman@gmail.com] <br>
<b>Sent:</b> 22 October 2009 21:16<br>
<b>To:</b> Woodbridge, Mark R<br>
<b>Cc:</b> ome-users@lists.openmicroscopy.org.uk<br>
<b>Subject:</b> Re: [ome-users] Problematic OME-TIFF file<o:p></o:p></span></p>
</div>
<p class=MsoNormal><o:p> </o:p></p>
<p class=MsoNormal style='margin-bottom:12.0pt'>Mark how big is the
image? I haven't updated to the newer version of OME yet (that's next
week's goal) but I would have some images work, and others die depending on
file size-- often I would get an error related to ICE timing out, etc...<br>
<br>
<br>
dg<o:p></o:p></p>
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<p class=MsoNormal>On Thu, Oct 22, 2009 at 3:47 PM, Woodbridge, Mark R <<a
href="mailto:m.woodbridge@imperial.ac.uk">m.woodbridge@imperial.ac.uk</a>>
wrote:<o:p></o:p></p>
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<p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'>Hi,<o:p></o:p></p>
<p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'> <o:p></o:p></p>
<p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'>I’ve
just been trying to upload a set of files to Beta4.1 using the importer. One
file causes the Importer to get stuck in a loop where it just says ‘analysing’
until I cancel the import:<o:p></o:p></p>
<p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'> <o:p></o:p></p>
<p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><a
href="http://cisbic.bioinformatics.ic.ac.uk/20090422bead20x_C1.ome.tif"
target="_blank">http://cisbic.bioinformatics.ic.ac.uk/20090422bead20x_C1.ome.tif</a><o:p></o:p></p>
<p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'> <o:p></o:p></p>
<p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'>The
importer previously refused to import the file. I’m not sure whether this
was correct, as the OME-TIFF validator says it’s ok, but previous
investigations suggested that the channel order metadata may be wrong. Anyway,
it should probably either succeed or fail rather than getting stuck ;-)<o:p></o:p></p>
<p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'> <o:p></o:p></p>
<p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'>Tested
with Importer running on Windows and Linux.<o:p></o:p></p>
<p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'> <o:p></o:p></p>
<p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span
style='color:#888888'>Mark.<o:p></o:p></span></p>
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<p class=MsoNormal style='margin-bottom:12.0pt'><br>
_______________________________________________<br>
ome-users mailing list<br>
<a href="mailto:ome-users@lists.openmicroscopy.org.uk">ome-users@lists.openmicroscopy.org.uk</a><br>
<a href="http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users"
target="_blank">http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users</a><o:p></o:p></p>
</div>
<p class=MsoNormal><br>
<br clear=all>
<br>
-- <br>
David A Gutman, M.D. Ph.D.<br>
Center for Comprehensive Informatics<br>
Emory University School of Medicine<o:p></o:p></p>
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