<html><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div>HI Scott,</div><div><br></div><div>Definitely a metadata issue which we'll need to look into. A test set would be great if you can supply one to us. We've got a only a small set of that data here and its all importing fine.</div><br><div><div>On 13 Jul 2009, at 22:09, Scott Grieshaber wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><span class="Apple-style-span" style="font-size: 12px; ">Hi <div><br></div><div>We are running OMERO 4.0.3 on OSX and are not able to import our micromanager data sets. If i generate a test data set using the demo camera the importer works just fine. However, when we take images using our camera (Cascade II EMCCD) import fails with the following exception. I am guessing this is a metadata issue differing between the different cameras?</div><div><br></div><div><br></div><div>java.lang.NullPointerException<br><span class="Apple-tab-span" style="white-space: pre; "> </span>at ome.util.LSID.<init>(LSID.java:62)<br><span class="Apple-tab-span" style="white-space: pre; "> </span>at ome.formats.OMEROMetadataStoreClient.setDetectorSettingsDetector(OMEROMetadataStoreClient.java:992)<br><span class="Apple-tab-span" style="white-space: pre; "> </span>at loci.formats.meta.FilterMetadata.setDetectorSettingsDetector(FilterMetadata.java:264)<br><span class="Apple-tab-span" style="white-space: pre; "> </span>at loci.formats.in.MicromanagerReader.initFile(MicromanagerReader.java:439)<br><span class="Apple-tab-span" style="white-space: pre; "> </span>at loci.formats.FormatReader.setId(FormatReader.java:327)<br><span class="Apple-tab-span" style="white-space: pre; "> </span>at loci.formats.ImageReader.setId(ImageReader.java:581)<br><span class="Apple-tab-span" style="white-space: pre; "> </span>at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:76)<br><span class="Apple-tab-span" style="white-space: pre; "> </span>at loci.formats.ChannelFiller.setId(ChannelFiller.java:187)<br><span class="Apple-tab-span" style="white-space: pre; "> </span>at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:76)<br><span class="Apple-tab-span" style="white-space: pre; "> </span>at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:83)<br><span class="Apple-tab-span" style="white-space: pre; "> </span>at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:76)<br><span class="Apple-tab-span" style="white-space: pre; "> </span>at ome.formats.importer.ImportLibrary.open(ImportLibrary.java:189)<br><span class="Apple-tab-span" style="white-space: pre; "> </span>at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:313)<br><span class="Apple-tab-span" style="white-space: pre; "> </span>at ome.formats.importer.ImportHandler.importImages(ImportHandler.java:192)<br><span class="Apple-tab-span" style="white-space: pre; "> </span>at ome.formats.importer.ImportHandler.access$0(ImportHandler.java:110)<br><span class="Apple-tab-span" style="white-space: pre; "> </span>at ome.formats.importer.ImportHandler$1.run(ImportHandler.java:91)<br></div><div><br><div><div>If you need a test data set let me know.</div><div><br></div><div>All the Best</div><div><br></div><div>Scott</div></div></div><br><br><div apple-content-edited="true"><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><span class="Apple-style-span" style="border-collapse: separate; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; -webkit-text-decorations-in-effect: none; text-indent: 0px; -webkit-text-size-adjust: auto; text-transform: none; orphans: 2; white-space: normal; widows: 2; word-spacing: 0px; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><p align="justify" style="text-indent: 20px; margin-top: 0px; margin-right: 0px; margin-bottom: 2px; margin-left: 0px; text-align: justify; "><font class="Apple-style-span" face="Times New Roman"><span class="Apple-style-span" style="font-family: 'Times New Roman'; text-align: justify; text-indent: 20px; ">Scott Grieshaber Ph.D.</span></font></p><p align="justify" style="text-indent: 20px; margin-top: 0px; margin-right: 0px; margin-bottom: 2px; margin-left: 0px; text-align: justify; "><font class="Apple-style-span" face="Times New Roman"><span class="Apple-style-span" style="font-family: 'Times New Roman'; text-align: justify; text-indent: 20px; ">Assistant Professor</span></font></p><p align="justify" style="text-indent: 20px; margin-top: 0px; margin-right: 0px; margin-bottom: 2px; margin-left: 0px; text-align: justify; "><font class="Apple-style-span" face="Times New Roman"><span class="Apple-style-span" style="font-family: 'Times New Roman'; text-align: justify; text-indent: 20px; ">University of Florida</span></font></p><p align="justify" style="text-indent: 20px; margin-top: 0px; margin-right: 0px; margin-bottom: 2px; margin-left: 0px; text-align: justify; "><font class="Apple-style-span" face="Times New Roman"><span class="Apple-style-span" style="font-family: 'Times New Roman'; text-align: justify; text-indent: 20px; ">Department of Oral Biology</span></font></p><p align="justify" style="text-indent: 20px; margin-top: 0px; margin-right: 0px; margin-bottom: 2px; margin-left: 0px; text-align: justify; "><font class="Apple-style-span" face="Times New Roman"><span class="Apple-style-span" style="font-family: 'Times New Roman'; text-align: justify; text-indent: 20px; ">School of Dentistry</span></font></p><p align="justify" style="text-indent: 20px; margin-top: 0px; margin-right: 0px; margin-bottom: 2px; margin-left: 0px; text-align: justify; "><font class="Apple-style-span" face="Times New Roman"><span class="Apple-style-span" style="font-family: 'Times New Roman'; text-align: justify; text-indent: 20px; ">PO BOX 100424 Room D5-33D</span></font></p><p align="justify" style="text-indent: 20px; margin-top: 0px; margin-right: 0px; margin-bottom: 2px; margin-left: 0px; text-align: justify; "><font class="Apple-style-span" face="Times New Roman"><span class="Apple-style-span" style="font-family: 'Times New Roman'; text-align: justify; text-indent: 20px; ">1600 SW Archer Road</span></font></p><p align="justify" style="text-indent: 20px; margin-top: 0px; margin-right: 0px; margin-bottom: 2px; margin-left: 0px; text-align: justify; "><font class="Apple-style-span" face="Times New Roman"><span class="Apple-style-span" style="font-family: 'Times New Roman'; text-align: justify; text-indent: 20px; ">Gainesville FL 32610</span></font></p><p align="justify" style="text-indent: 20px; margin-top: 0px; margin-right: 0px; margin-bottom: 2px; margin-left: 0px; text-align: justify; "><font class="Apple-style-span" face="Times New Roman"><span class="Apple-style-span" style="font-family: 'Times New Roman'; text-align: justify; text-indent: 20px; ">(352) 273-8856</span></font></p><p align="justify" style="text-indent: 20px; margin-top: 0px; margin-right: 0px; margin-bottom: 2px; margin-left: 0px; text-align: justify; "><font class="Apple-style-span" face="Times New Roman"><span class="Apple-style-span" style="font-family: 'Times New Roman'; text-align: justify; text-indent: 20px; "><a href="mailto:sgriesha@ufl.edu">sgriesha@ufl.edu</a></span></font></p><div><br class="khtml-block-placeholder"></div></div></span></div></span></div></span></div>_______________________________________________<br>ome-users mailing list<br><a href="mailto:ome-users@lists.openmicroscopy.org.uk">ome-users@lists.openmicroscopy.org.uk</a><br>http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users<br></blockquote></div><br><div> <span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div><div>Brian Loranger</div><div><div><div><div>Software Developer, Open Microscopy Environment</div><div>Division of Gene Regulation and Expression</div><div>University of Dundee</div><div>(The University of Dundee is a registered Scottish charity, No: SC015096)</div></div></div></div></div></div></span> </div><br></body></html>