<HTML><BODY style="word-wrap: break-word; -khtml-nbsp-mode: space; -khtml-line-break: after-white-space; ">Hi Michael,<DIV><BR class="khtml-block-placeholder"></DIV><DIV>I'm the "importer" guy for OMERO. </DIV><DIV><BR class="khtml-block-placeholder"></DIV><DIV>The OMERO.importer only uses a subset of the bio-formats library from loci, so if you're trying to compile the entire loci package, you will probably run into issues since they are constantly updating and changing their library and we mirror their full repository.</DIV><DIV><BR class="khtml-block-placeholder"></DIV><DIV>Instead, if you compile just the importer by itself, it should be able to build with all of the required bio-formats parts pretty reliably. </DIV><DIV><BR class="khtml-block-placeholder"></DIV><DIV>I'm also curious, were you using ant to do the import build? (Our svn maintainer is currently working on improving the ant build just now to handle loci more effectively).</DIV><DIV><BR class="khtml-block-placeholder"></DIV><DIV>Cheers,</DIV><DIV><BR><DIV> <SPAN class="Apple-style-span" style="border-collapse: separate; border-spacing: 0px 0px; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; text-align: auto; -khtml-text-decorations-in-effect: none; text-indent: 0px; -apple-text-size-adjust: auto; text-transform: none; orphans: 2; white-space: normal; widows: 2; word-spacing: 0px; "><DIV>Brian Loranger</DIV><DIV>Software Developer, Open Microscopy Environment</DIV><DIV>Division of Gene Regulation and Expression</DIV><DIV>University of Dundee</DIV><DIV><BR class="khtml-block-placeholder"></DIV><BR class="Apple-interchange-newline"></SPAN> </DIV><BR><DIV><DIV>On 29 Oct 2007, at 19:26, McCaughey, Michael J wrote:</DIV><BR class="Apple-interchange-newline"><BLOCKQUOTE type="cite"><P><FONT size="2">That's a help. Ignoring a few thousand warning messages, I get to this error in the importer compile:<BR> <BR> <BR> generate:<BR> <BR> compile:<BR> [javac] Compiling 25 source files to /home/mrmike/Documents/omero/components/importer/target/classes<BR> [javac] ----------<BR> [javac] 1. ERROR in /home/mrmike/Documents/omero/components/importer/src/loci/formats/ome/OMEXMLMetadata.java (at line 134)<BR> [javac] OMEXMLNode node = new CustomNode(el);<BR> [javac] ^^^^^^^^^^<BR> [javac] CustomNode cannot be resolved to a type<BR> <BR> any ideas on that one?<BR> <BR> Michael J. McCaughey, PhD<BR> Molecular Physiology and Biophysics<BR> U9203 MRBIII<BR> 6-6175<BR> <BR> <BR> <BR> -----Original Message-----<BR> From: Chris Allan [<A href="mailto:callan@blackcat.ca">mailto:callan@blackcat.ca</A>]<BR> Sent: Mon 10/29/2007 12:52 PM<BR> To: McCaughey, Michael J<BR> Cc: <A href="mailto:ome-users@lists.openmicroscopy.org.uk">ome-users@lists.openmicroscopy.org.uk</A><BR> Subject: Re: [ome-users] ivy dependancies<BR> <BR> <BR> On 29 Oct 2007, at 17:15, McCaughey, Michael J wrote:<BR> <BR> > I'm trying to install OMERO from a current trunk checkout, but I <BR> > can't build it due to some missing depends related to ivy. I've <BR> > poked around the SVN repository but couldn't find them. Any <BR> > suggestions? Error is attached below.<BR> <BR> Hi Mike.<BR> <BR> The build system is in a bit of flux at the moment (we're trying to <BR> remove some of the dependencies on the actual omero.class). Can you <BR> try the following?<BR> <BR> ant clean<BR> ANT_OPTS="-Xmx512M" ant quick build<BR> <BR> ><BR> > Mike<BR> <BR> Ciao.<BR> <BR> -Chris<BR> <BR> </FONT> </P><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">_______________________________________________</DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">ome-users mailing list</DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><A href="mailto:ome-users@lists.openmicroscopy.org.uk">ome-users@lists.openmicroscopy.org.uk</A></DIV><DIV style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><A href="http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users">http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users</A></DIV> </BLOCKQUOTE></DIV><BR></DIV></BODY></HTML>