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<DIV><SPAN class=968033616-08082007><FONT face=Arial size=2>Hey
all,</FONT></SPAN></DIV>
<DIV><SPAN class=968033616-08082007><FONT face=Arial
size=2></FONT></SPAN> </DIV>
<DIV><FONT size=2><SPAN class=968033616-08082007><FONT face=Arial>Sort of a
small problem, but this is what happened: </FONT></SPAN><SPAN
class=968033616-08082007><FONT face=Arial>When I try to do "ome annotate
spreadsheet -n "ImportSpreadsheetTemplateCG-1.xls" the prompt actually creates
the annotations, rather than just displaying what <EM>would be
</EM>created. On the OME website's System administration page, it says
that the "-n" and the "--noop" options will "not create any annotations, just
report what would be created" (<A
href="http://www.openmicroscopy.org.uk/system-admin/docs/annotate_spreadsheet.html">http://www.openmicroscopy.org.uk/system-admin/docs/annotate_spreadsheet.html</A>).</FONT></SPAN></FONT></DIV><SPAN
class=968033616-08082007>
<DIV><BR><FONT face=Arial size=2>I then tried to verify that -n and --noop are
commands by typing "ome annotate spreadsheet help" but this did not work.
When I did so, the response I got was:</FONT></DIV>
<DIV><FONT size=2></FONT> </DIV>
<DIV><SPAN class=968033616-08082007><FONT face=Terminal size=2>[hicks@ome
Brunn's Nest]$ ome annotate spreadsheet help</FONT></SPAN></DIV>
<DIV><SPAN class=968033616-08082007><FONT face=Terminal size=2>\1 better written
as $1 at /usr/lib/perl5/site_perl/5.8.5/ome/Web/Search.pm line
678.</FONT></SPAN></DIV>
<DIV><SPAN class=968033616-08082007><FONT face=Terminal size=2>Use of
uninitialized value in pattern match (m//) at
/usr/lib/perl5/5.8.5/Getopt/Long.pm line 315.</FONT></SPAN></DIV>
<DIV><SPAN class=968033616-08082007><FONT face=Terminal size=2>Use of
uninitialized value in string eq at /usr/lib/perl5/5.8.5/Getopt/Long.pm line
317.</FONT></SPAN></DIV>
<DIV><SPAN class=968033616-08082007><FONT face=Terminal size=2>Use of
uninitialized value in pattern match (m//) at
/usr/lib/perl5/5.8.5/Getopt/Long.pm line 686.</FONT></SPAN></DIV>
<DIV><SPAN class=968033616-08082007><FONT face=Terminal size=2>Please login to
OME:</FONT></SPAN></DIV>
<DIV><SPAN class=968033616-08082007><FONT face=Terminal size=2>Username?
hicks</FONT></SPAN></DIV>
<DIV><SPAN class=968033616-08082007><FONT face=Terminal
size=2>Password?</FONT></SPAN></DIV>
<DIV><SPAN class=968033616-08082007><FONT face=Terminal size=2>Great, you're
in.</FONT></SPAN></DIV>
<DIV><SPAN class=968033616-08082007><FONT face=Terminal
size=2></FONT></SPAN> </DIV>
<DIV><SPAN class=968033616-08082007><FONT face=Terminal size=2>Couldn't open
help for reading: No such file or directory at
/usr/lib/perl5/site_perl/5.8.5/OME/Util/Annotate/SpreadsheetReader.pm line 248,
<STDIN> line 2.</FONT></SPAN></DIV>
<DIV><SPAN class=968033616-08082007><FONT face="MS Mincho"
size=2></FONT></SPAN> </DIV>
<DIV><SPAN class=968033616-08082007><FONT face=Arial size=2>Also, when I tried
importing the spreadsheet, the response I got was:</FONT></SPAN></DIV>
<DIV><SPAN class=968033616-08082007><FONT face=Arial
size=2></FONT></SPAN> </DIV>
<DIV><SPAN class=968033616-08082007><FONT face=Arial size=2>
<DIV><SPAN class=968033616-08082007><FONT face=Terminal size=2>[hicks@ome
Brunn's Nest]$ ome annotate spreadsheet help</FONT></SPAN></DIV>
<DIV><SPAN class=968033616-08082007><FONT face=Terminal size=2>\1 better written
as $1 at /usr/lib/perl5/site_perl/5.8.5/ome/Web/Search.pm line
678.</FONT></SPAN></DIV>
<DIV><SPAN class=968033616-08082007><FONT face=Terminal size=2>Use of
uninitialized value in pattern match (m//) at
/usr/lib/perl5/5.8.5/Getopt/Long.pm line 315.</FONT></SPAN></DIV>
<DIV><SPAN class=968033616-08082007><FONT face=Terminal size=2>Use of
uninitialized value in string eq at /usr/lib/perl5/5.8.5/Getopt/Long.pm line
317.</FONT></SPAN></DIV>
<DIV><SPAN class=968033616-08082007><FONT face=Terminal size=2>Use of
uninitialized value in pattern match (m//) at
/usr/lib/perl5/5.8.5/Getopt/Long.pm line 686.</FONT></SPAN></DIV>
<DIV><SPAN class=968033616-08082007><FONT face=Terminal size=2>Please login to
OME:</FONT></SPAN></DIV>
<DIV><SPAN class=968033616-08082007><FONT face=Terminal size=2>Username?
hicks</FONT></SPAN></DIV>
<DIV><SPAN class=968033616-08082007><FONT face=Terminal
size=2>Password?</FONT></SPAN></DIV>
<DIV><SPAN class=968033616-08082007><FONT face=Terminal size=2>Great, you're
in.</FONT></SPAN></DIV>
<DIV><SPAN class=968033616-08082007><FONT
face=Terminal></FONT></SPAN> </DIV>
<DIV><SPAN class=968033616-08082007><FONT face=Terminal>Finished
annotating:</FONT></SPAN></DIV>
<DIV><SPAN class=968033616-08082007><FONT face=Terminal>Spreadsheet Identifier:
'189'</FONT></SPAN></DIV>
<DIV><SPAN class=968033616-08082007>
<FONT face=Terminal>Image ID: 189</FONT></SPAN></DIV>
<DIV><SPAN class=968033616-08082007>
<FONT face=Terminal>Classifications:</FONT></SPAN></DIV>
<DIV><SPAN
class=968033616-08082007>
<FONT face=Terminal>\_ 'Camera' : '3.3ug_per_mL'</FONT></SPAN></DIV>
<DIV><SPAN
class=968033616-08082007>
<FONT face=Terminal>\_ 'Concentration_of_Primary' : 'DC200'</FONT></SPAN></DIV>
<DIV><SPAN
class=968033616-08082007>
...(this continues. It describes all of the annotations for each
image. Also, all of these annotations are wrong, because the Categories
are made under the wrong Category Groups).</SPAN></DIV>
<DIV><SPAN class=968033616-08082007></SPAN> </DIV>
<DIV><SPAN class=968033616-08082007>If I then go into the OME web browser and
search for Module Extensions, it turns out that the Spreadsheet Global Import
truly <EM>was</EM> created, and that all of the annotations were made.
Does this make sense to anyone?</SPAN></DIV>
<DIV><SPAN class=968033616-08082007></SPAN> </DIV>
<DIV><SPAN class=968033616-08082007>Thanks for the help,</SPAN></DIV>
<DIV><SPAN class=968033616-08082007>--Bryson
Hicks</SPAN></DIV></FONT></SPAN></SPAN></DIV><br>CONFIDENTIALITY NOTICE: This e-mail message, including any attachments, is for the sole use of the intended recipient(s) and may contain confidential and privileged information protected by law. Any unauthorized review, use, disclosure or distribution is prohibited. If you are not the intended recipient, please contact the sender by reply e-mail and destroy all copies of the original message.</BODY></HTML>