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<DIV><SPAN class=573062713-09022007><FONT face=Arial size=2>Hi - First I am
trying to see how I would best store in OME XML the results of a phenotypic
screen, and I'm not sure how to describe the compound treatment and dose
information and the positive and negative control information in the XML
correctly so that I can create templates to display things nicely from
OME.</FONT></SPAN></DIV>
<DIV><SPAN class=573062713-09022007><FONT face=Arial
size=2></FONT></SPAN> </DIV>
<DIV><SPAN class=573062713-09022007><FONT face=Arial size=2>What I want is to be
able to properly annotate the compounds + concentrations tested in each well of
plates in a screen, and to flag the wells that are control wells, and then
to be able to use this semantic information in querying, and creating a table
view of the screen. I can create a category group called treatment,
and then add my treatments, but how to associate dose to the treatment?
Also if I use category group, this</FONT></SPAN><SPAN
class=573062713-09022007><FONT face=Arial size=2> is tied to each image,
when I would rather it be tied to the 'sample' in the
well?</FONT></SPAN></DIV>
<DIV><SPAN class=573062713-09022007><FONT face=Arial
size=2></FONT></SPAN> </DIV>
<DIV><SPAN class=573062713-09022007><FONT face=Arial size=2>Did I read somewhere
that you plan to re-use from the MGED ontology/xml the biomaterials element
? </FONT> </SPAN></DIV>
<DIV><SPAN class=573062713-09022007><FONT face=Arial
size=2></FONT></SPAN> </DIV>
<DIV><SPAN class=573062713-09022007><FONT face=Arial size=2>Second, I saw that
in an older version there was the possibility to run command line scripts from
the analysis engine but that it broke in recent versions. I'd be
interested to have this working to incorporate some non mathlab scripts, or
scilab scripts. </FONT></SPAN></DIV>
<DIV><SPAN class=573062713-09022007><FONT face=Arial
size=2></FONT></SPAN> </DIV>
<DIV><SPAN class=573062713-09022007><FONT face=Arial size=2>Thanks for your
help!</FONT></SPAN></DIV>
<DIV><SPAN class=573062713-09022007><FONT face=Arial
size=2></FONT></SPAN> </DIV>
<DIV><SPAN class=573062713-09022007><FONT face=Arial
size=2>Keith</FONT></SPAN></DIV></BODY></HTML>