SUCCESS DOWNLOADING PACKAGE -- OUTPUT FROM DOWNLOADER "wget -nv -N": "10:46:00 URL:http://openmicroscopy.org/packages/perl/DBD-Pg-1.43.tar.gz [131267/131267] -> "DBD-Pg-1.43.tar.gz" [1] " SUCCESS EXTRACTING /var/tmp/OME/install/DBD-Pg-1.43.tar.gz USING PERL CONFIGURE SCRIPT -- 'perl Makefile.PL ' SUCCESS -- OUTPUT: "Configuring DBD::Pg 1.43 Remember to actually read the README file! OS: linux PostgreSQL version: 80007 Checking if your kit is complete... Looks good Using DBI 1.48 (for perl 5.008006 on i386-linux-thread-multi) installed in /usr/lib/perl5/vendor_perl/5.8.6/i386-linux-thread-multi/auto/DBI/ Writing Makefile for DBD::Pg " COMPILING MODULE -- 'make' SUCCESS -- OUTPUT: "cp Pg.pm blib/lib/DBD/Pg.pm /usr/bin/perl -p -e "s/~DRIVER~/Pg/g" /usr/lib/perl5/vendor_perl/5.8.6/i386-linux-thread-multi/auto/DBI//Driver.xst > Pg.xsi /usr/bin/perl /usr/lib/perl5/5.8.6/ExtUtils/xsubpp -typemap /usr/lib/perl5/5.8.6/ExtUtils/typemap Pg.xs > Pg.xsc && mv Pg.xsc Pg.c gcc -c -I/usr/include -I/usr/lib/perl5/vendor_perl/5.8.6/i386-linux-thread-multi/auto/DBI/ -D_REENTRANT -D_GNU_SOURCE -DDEBUGGING -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include/gdbm -DPGLIBVERSION=80007 -O2 -g -pipe -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -m32 -march=i386 -mtune=pentium4 -fasynchronous-unwind-tables -DPERL_EXTMALLOC_DEF -Dmalloc=Perl_malloc -Dfree=Perl_mfree -Drealloc=Perl_realloc -Dcalloc=Perl_calloc -DVERSION=\"1.43\" -DXS_VERSION=\"1.43\" -fPIC "-I/usr/lib/perl5/5.8.6/i386-linux-thread-multi/CORE" Pg.c gcc -c -I/usr/include -I/usr/lib/perl5/vendor_perl/5.8.6/i386-linux-thread-multi/auto/DBI/ -D_REENTRANT -D_GNU_SOURCE -DDEBUGGING -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include/gdbm -DPGLIBVERSION=80007 -O2 -g -pipe -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -m32 -march=i386 -mtune=pentium4 -fasynchronous-unwind-tables -DPERL_EXTMALLOC_DEF -Dmalloc=Perl_malloc -Dfree=Perl_mfree -Drealloc=Perl_realloc -Dcalloc=Perl_calloc -DVERSION=\"1.43\" -DXS_VERSION=\"1.43\" -fPIC "-I/usr/lib/perl5/5.8.6/i386-linux-thread-multi/CORE" dbdimp.c gcc -c -I/usr/include -I/usr/lib/perl5/vendor_perl/5.8.6/i386-linux-thread-multi/auto/DBI/ -D_REENTRANT -D_GNU_SOURCE -DDEBUGGING -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include/gdbm -DPGLIBVERSION=80007 -O2 -g -pipe -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -m32 -march=i386 -mtune=pentium4 -fasynchronous-unwind-tables -DPERL_EXTMALLOC_DEF -Dmalloc=Perl_malloc -Dfree=Perl_mfree -Drealloc=Perl_realloc -Dcalloc=Perl_calloc -DVERSION=\"1.43\" -DXS_VERSION=\"1.43\" -fPIC "-I/usr/lib/perl5/5.8.6/i386-linux-thread-multi/CORE" quote.c quote.c: In function ‘quote_bytea’: quote.c:310: warning: pointer targets in passing argument 1 of ‘strlen’ differ in signedness quote.c:310: warning: pointer targets in passing argument 2 of ‘__builtin___strncpy_chk’ differ in signedness quote.c:310: warning: pointer targets in passing argument 1 of ‘strlen’ differ in signedness quote.c:310: warning: pointer targets in passing argument 2 of ‘__strncpy_ichk’ differ in signedness gcc -c -I/usr/include -I/usr/lib/perl5/vendor_perl/5.8.6/i386-linux-thread-multi/auto/DBI/ -D_REENTRANT -D_GNU_SOURCE -DDEBUGGING -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include/gdbm -DPGLIBVERSION=80007 -O2 -g -pipe -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -m32 -march=i386 -mtune=pentium4 -fasynchronous-unwind-tables -DPERL_EXTMALLOC_DEF -Dmalloc=Perl_malloc -Dfree=Perl_mfree -Drealloc=Perl_realloc -Dcalloc=Perl_calloc -DVERSION=\"1.43\" -DXS_VERSION=\"1.43\" -fPIC "-I/usr/lib/perl5/5.8.6/i386-linux-thread-multi/CORE" types.c Running Mkbootstrap for DBD::Pg () chmod 644 Pg.bs rm -f blib/arch/auto/DBD/Pg/Pg.so gcc -shared -L/usr/local/lib Pg.o dbdimp.o quote.o types.o -o blib/arch/auto/DBD/Pg/Pg.so -L/usr/lib -lssl -lcrypto -lpq chmod 755 blib/arch/auto/DBD/Pg/Pg.so cp Pg.bs blib/arch/auto/DBD/Pg/Pg.bs chmod 644 blib/arch/auto/DBD/Pg/Pg.bs Manifying blib/man3/DBD::Pg.3pm " TESTING MODULE -- 'make test' SUCCESS -- OUTPUT: "PERL_DL_NONLAZY=1 /usr/bin/perl "-MExtUtils::Command::MM" "-e" "test_harness(0, 'blib/lib', 'blib/arch')" t/*.t t/00basic...........ok t/01connect.........Use of uninitialized value in concatenation (.) or string at t/01connect.t line 73. Use of uninitialized value in concatenation (.) or string at t/01connect.t line 73. Use of uninitialized value in concatenation (.) or string at t/01connect.t line 73. Use of uninitialized value in concatenation (.) or string at t/01connect.t line 73. Use of uninitialized value in concatenation (.) or string at t/01connect.t line 73. # # Program Version # Perl 5.8.6 (linux) # DBD::Pg # PostgreSQL (compiled) # PostgreSQL (target) # PostgreSQL (reported) # DBI 1.48 # DBI_DSN skipped all skipped: Cannot run test unless DBI_DSN is defined. See the README file. t/01constants.......ok t/01setup...........skipped all skipped: Cannot run test unless DBI_DSN is defined. See the README file. t/02attribs.........skipped all skipped: Cannot run test unless DBI_DSN is defined. See the README file t/03dbmethod........skipped all skipped: Cannot run test unless DBI_DSN is defined. See the README file t/03smethod.........skipped all skipped: Cannot run test unless DBI_DSN is defined. See the README file t/04misc............skipped all skipped: Cannot run test unless DBI_DSN is defined. See the README file t/05arrays..........skipped all skipped: Cannot run test unless DBI_DSN is defined. See the README file t/06bytea...........skipped all skipped: Cannot run test unless DBI_DSN is defined. See the README file t/07copy............skipped all skipped: Cannot run test unless DBI_DSN is defined. See the README file t/12placeholders....skipped all skipped: Cannot run test unless DBI_DSN is defined. See the README file t/20savepoints......skipped all skipped: Cannot run test unless DBI_DSN is defined. See the README file t/99_pod............skipped all skipped: Test::Pod 0.95 required for testing POD t/99cleanup.........skipped all skipped: Cannot run test unless DBI_DSN is defined. See the README file All tests successful, 13 tests skipped. Files=15, Tests=23, 2 wallclock secs ( 1.56 cusr + 0.63 csys = 2.19 CPU) " INSTALLING MODULE -- 'make install' SUCCESS -- OUTPUT: "Installing /usr/lib/perl5/site_perl/5.8.6/i386-linux-thread-multi/auto/DBD/Pg/Pg.bs Installing /usr/lib/perl5/site_perl/5.8.6/i386-linux-thread-multi/auto/DBD/Pg/Pg.so Files found in blib/arch: installing files in blib/lib into architecture dependent library tree Installing /usr/lib/perl5/site_perl/5.8.6/i386-linux-thread-multi/DBD/Pg.pm Installing /usr/share/man/man3/DBD::Pg.3pm Writing /usr/lib/perl5/site_perl/5.8.6/i386-linux-thread-multi/auto/DBD/Pg/.packlist Appending installation info to /usr/lib/perl5/5.8.6/i386-linux-thread-multi/perllocal.pod " USING PERL CONFIGURE SCRIPT -- 'perl Makefile.PL ' SUCCESS -- OUTPUT: "You can remove all previous versions of OME with the following command: perl Makefile.PL uninstall -------------------------- Removing sym-linked NonblockingSlaveWorkerCGI.pl and not acrrying if we succeed. Performing `make clean` in directory /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/Matlab make: *** No rule to make target `clean'. Stop. Checking if your kit is complete... Warning: the following files are missing in your kit: OME/ImportEngine/.#AbstractFormat.pm.1.44 OME/ImportEngine/.#TIFFreader.pm.1.42 OME/ImportEngine/FilenamePatternNotes.txt OME/Remote/XMLRPC.pm OME/Util/Annotate/Annotate.pm OME/Util/ChainStats.pm Please inform the author. WARNING: libtiff must be installed ! Checking if your kit is complete... Looks good Writing Makefile for OME::Image::Pix Checking if your kit is complete... Looks good Writing Makefile for Repacker Writing Makefile for OME " COMPILING MODULE -- 'make' SUCCESS -- OUTPUT: "cp OME/Install/CoreSystemTask.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Install/CoreSystemTask.pm cp OME/Web/DefaultHeaderBuilder.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/DefaultHeaderBuilder.pm cp OME/Web/DBObjRender/__OME_AnalysisChain_Link.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__OME_AnalysisChain_Link.pm cp OME/Analysis/Engine/UnthreadedPerlExecutor.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Analysis/Engine/UnthreadedPerlExecutor.pm cp OME/LookupTable/Entry.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/LookupTable/Entry.pm cp OME/Web/ImageDetailAnnotator.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/ImageDetailAnnotator.pm cp OME/Web/CG_Search.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/CG_Search.pm cp OME/LSID.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/LSID.pm cp OME/ImportEngine/BMPUtils.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/ImportEngine/BMPUtils.pm cp OME/Image/LocalPixels.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Image/LocalPixels.pm cp OME/Matlab/Matlab.xs /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Matlab/Matlab.xs cp OME/ImportExport/ResolveFiles.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/ImportExport/ResolveFiles.pm cp OME/Tests/ForkedImageImport.pl /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Tests/ForkedImageImport.pl cp OME/Analysis/Engine/Executor.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Analysis/Engine/Executor.pm cp OME/AnalysisPath.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/AnalysisPath.pm cp OME/SemanticType/Superclass.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/SemanticType/Superclass.pm cp OME/Util/Import.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Util/Import.pm cp OME/File.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/File.pm cp OME/Remote/Facades/AnnotationFacade.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Remote/Facades/AnnotationFacade.pm cp OME/ModuleExecution/ParentalOutput.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/ModuleExecution/ParentalOutput.pm cp OME/Web/CG_Annotator.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/CG_Annotator.pm cp OME/Web/ImportModules.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/ImportModules.pm cp OME/AnalysisChainExecution.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/AnalysisChainExecution.pm cp OME/SetDB.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/SetDB.pm cp OME/Image/Pix/t/tinyTest-LE.raw /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Image/Pix/t/tinyTest-LE.raw cp OME/Analysis/Engine/Worker.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Analysis/Engine/Worker.pm cp OME/Web/DBObjDetail/__OME_Module.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/DBObjDetail/__OME_Module.pm cp OME/Install/t/RegressionSuite.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Install/t/RegressionSuite.pm cp OME/Web/DBObjRender/__OriginalFile.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__OriginalFile.pm cp OME/Install/InstallationTask.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Install/InstallationTask.pm cp OME/Remote/Facades/ProjectFacade.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Remote/Facades/ProjectFacade.pm cp OME/Install/PerlModuleTask.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Install/PerlModuleTask.pm cp OME/Web/TemplateManager.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/TemplateManager.pm cp OME/Web/ImportImages.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/ImportImages.pm cp OME/Dataset.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Dataset.pm cp OME/Remote/SerializerXMLRPC.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Remote/SerializerXMLRPC.pm cp OME/Image/Pixels.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Image/Pixels.pm cp OME/Web/DBObjCreate/OME_Dataset.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/DBObjCreate/OME_Dataset.pm cp OME/Web/TableBrowse/FooterBuilder.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/TableBrowse/FooterBuilder.pm cp OME/Tasks/ImageTasks.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Tasks/ImageTasks.pm cp OME/Web/Logout.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/Logout.pm cp OME/Remote/Apache2/XMLRPC.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Remote/Apache2/XMLRPC.pm cp OME/AnalysisChain/Link.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/AnalysisChain/Link.pm cp OME/Util/Dev/Templates.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Util/Dev/Templates.pm cp OME/Analysis/Handlers/EchoHandler.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Analysis/Handlers/EchoHandler.pm cp OME/Install/t/Environment_deleteTree_Test.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Install/t/Environment_deleteTree_Test.pm cp OME/Web/FindSpots.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/FindSpots.pm cp OME/Web/ImageAnnotationTable.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/ImageAnnotationTable.pm cp OME/Analysis/Handlers/MatlabHandler.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Analysis/Handlers/MatlabHandler.pm cp OME/Install/Util.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Install/Util.pm cp OME/SemanticType/Element.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/SemanticType/Element.pm cp OME/Web/Util/Category.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/Util/Category.pm cp OME/Remote/DTO/GenericAssembler.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Remote/DTO/GenericAssembler.pm cp OME/ImportEngine/Params.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/ImportEngine/Params.pm cp OME/Util/Dev.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Util/Dev.pm cp OME/Install/AnalysisConfigTask.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Install/AnalysisConfigTask.pm cp OME/Tasks/AEFacade.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Tasks/AEFacade.pm cp SVGcatchMsg.pl /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/SVGcatchMsg.pl cp OME/Web/DBObjRender/__OME_ModuleExecution.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__OME_ModuleExecution.pm cp OME/Web/DBObjRender/__BayesNetClassifier.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__BayesNetClassifier.pm cp OME/Web/DBObjRender/__Probe.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__Probe.pm cp OME/Util/Data/dbAdmin.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Util/Data/dbAdmin.pm cp OME/Web/Authenticated.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/Authenticated.pm cp OME/ImportEngine/LSMreader.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/ImportEngine/LSMreader.pm cp OME/Install/PreInstallTask.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Install/PreInstallTask.pm cp OME/Web/GuestMenuBuilder.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/GuestMenuBuilder.pm cp OME/Image/Pix/t/tinyTest-BE.raw /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Image/Pix/t/tinyTest-BE.raw cp OME/Util/ExecuteChain.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Util/ExecuteChain.pm cp OME/Analysis/Modules/Slicers/Pixels.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Analysis/Modules/Slicers/Pixels.pm cp OME/Web/DBObjRender/__OME_SemanticType_Element.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__OME_SemanticType_Element.pm cp OME/ViewerPreferences.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/ViewerPreferences.pm cp OME/Java/DTOInterface.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Java/DTOInterface.pm cp OME/Util/cURL.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Util/cURL.pm cp OME/Web/GeneStageAnnotator.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/GeneStageAnnotator.pm cp OME/Web/TableBrowse.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/TableBrowse.pm cp OME/Tests/ExportSession.pl /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Tests/ExportSession.pl cp OME/Web/TaskProgress.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/TaskProgress.pm cp OME/ImportEngine/ImportEngine.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/ImportEngine/ImportEngine.pm cp OME/Analysis/Handlers/DefaultLoopHandler.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Analysis/Handlers/DefaultLoopHandler.pm cp OME/Util/Top.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Util/Top.pm cp OME/Web/ImageAnnotationDetail.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/ImageAnnotationDetail.pm cp OME/Analysis/Engine/SimpleWorkerExecutor.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Analysis/Engine/SimpleWorkerExecutor.pm cp OME/Module/FormalOutput.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Module/FormalOutput.pm cp OME/Web/DBObjRender/__Fluorofor.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__Fluorofor.pm cp OME/Web/RunClassifier.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/RunClassifier.pm cp OME/Web/ExecuteChain.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/ExecuteChain.pm cp OME/ImportExport/HierarchyExport.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/ImportExport/HierarchyExport.pm cp OME/UserState.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/UserState.pm cp OME/ImportExport/HierarchyImport.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/ImportExport/HierarchyImport.pm cp OME/Web/XMLFileExport.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/XMLFileExport.pm cp OME/Tasks/ClassifierTasks.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Tasks/ClassifierTasks.pm cp OME/Util/Admin/Configure.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Util/Admin/Configure.pm cp OME/Web/DBObjDetail/__OME_Dataset.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/DBObjDetail/__OME_Dataset.pm cp OME/Analysis/Modules/Classification/SignatureStitcher.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Analysis/Modules/Classification/SignatureStitcher.pm cp OME/Web/ImageAnnotationBrowser.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/ImageAnnotationBrowser.pm cp OME/ImportExport/Repacker/MANIFEST /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/ImportExport/Repacker/MANIFEST cp OME/ImportExport/DataHistoryImport.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/ImportExport/DataHistoryImport.pm cp OME/ImportEngine/BMPreader.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/ImportEngine/BMPreader.pm cp OME/Image/Pix/libpix.c /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Image/Pix/libpix.c cp OME/ImportExport/ModuleImport.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/ImportExport/ModuleImport.pm cp OME/Web/DBObjRender/__Objective.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__Objective.pm cp OME/Util/Dev/Classifier.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Util/Dev/Classifier.pm cp OME/Analysis/Modules/Tracking/FindSpots.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Analysis/Modules/Tracking/FindSpots.pm cp OME/Util/Commands.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Util/Commands.pm cp OME/Web/STdoc.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/STdoc.pm cp OME/Analysis/Modules/Tests/PassThrough.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Analysis/Modules/Tests/PassThrough.pm cp OME/Web/DBObjRender/__OME_AnalysisChainExecution_NodeExecution.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__OME_AnalysisChainExecution_NodeExecution.pm cp OME/Web/GetGraphics.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/GetGraphics.pm cp OME/Analysis/Modules/PPM/Typecast.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Analysis/Modules/PPM/Typecast.pm cp OME/Feature.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Feature.pm cp OME/Matlab/Compiled.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Matlab/Compiled.pm cp OME/Analysis/Modules/Slicers/Stacks.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Analysis/Modules/Slicers/Stacks.pm cp OME/Install/MaintenanceTask.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Install/MaintenanceTask.pm cp OME/Web/SpreadsheetImporterPrompt.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/SpreadsheetImporterPrompt.pm cp OME/Web/AccessManager.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/AccessManager.pm cp OME/Web/DatasetOnGoogleMaps.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/DatasetOnGoogleMaps.pm cp OME/Web/DBObjDetail/__OME_ModuleExecution.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/DBObjDetail/__OME_ModuleExecution.pm cp OME/Analysis/Modules/Tracking/TrackSpots.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Analysis/Modules/Tracking/TrackSpots.pm cp OME/Analysis/Modules/Histogram/PlaneHistogram.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Analysis/Modules/Histogram/PlaneHistogram.pm cp OME/Tasks/ChainManager.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Tasks/ChainManager.pm cp OME/Tasks/AnnotationManager.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Tasks/AnnotationManager.pm cp OME/Analysis/Modules/PPM/FourierTransform.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Analysis/Modules/PPM/FourierTransform.pm cp OME/Image/DatasetMap.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Image/DatasetMap.pm cp OME/Analysis/Handlers/NoopHandler.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Analysis/Handlers/NoopHandler.pm cp OME/Fork.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Fork.pm cp OME/ImportExport/DataHistoryExport.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/ImportExport/DataHistoryExport.pm cp OME/Module/Category.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Module/Category.pm cp OME/Tasks/PixelsManager.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Tasks/PixelsManager.pm cp OME/Tasks/CategoryManager.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Tasks/CategoryManager.pm cp OME/Analysis/Modules/PPM/Typecast2DerivedPixels.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Analysis/Modules/PPM/Typecast2DerivedPixels.pm cp OME/Analysis/Modules/Tests/FauxSignature.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Analysis/Modules/Tests/FauxSignature.pm cp OME/Analysis/Modules/Slicers/Timepoints.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Analysis/Modules/Slicers/Timepoints.pm cp OME/ImportEngine/GELreader.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/ImportEngine/GELreader.pm cp OME/Web.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web.pm cp OME/ImportEngine/MetamorphHTDFormat.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/ImportEngine/MetamorphHTDFormat.pm cp OME/Analysis/Engine/FeatureHierarchy.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Analysis/Engine/FeatureHierarchy.pm cp OME/Web/DBObjRender/__OME_AnalysisChainExecution.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__OME_AnalysisChainExecution.pm cp OME/Web/DBObjRender.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/DBObjRender.pm cp OME/DBConnection.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/DBConnection.pm cp OME/Install/LibraryTask.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Install/LibraryTask.pm cp OME/Configuration/Variable.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Configuration/Variable.pm cp omeapi.pod /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/omeapi.pod cp OME/Web/Login.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/Login.pm cp OME/Tasks/HistoryManager.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Tasks/HistoryManager.pm cp OME/Util/Admin/GroupAdmin.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Util/Admin/GroupAdmin.pm cp OME/Remote/DTO/ProjectAssembler.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Remote/DTO/ProjectAssembler.pm cp OME/Image/Pix/t/test.t /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Image/Pix/t/test.t cp OME/Tasks/LSIDManager.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Tasks/LSIDManager.pm cp OME/Tasks/AttributeManager.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Tasks/AttributeManager.pm cp OME/Analysis/Modules/Tests/DatasetSignature.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Analysis/Modules/Tests/DatasetSignature.pm cp OME/Web/DBObjRender/__OME_AnalysisChain_Node.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__OME_AnalysisChain_Node.pm cp OME/Image/Pix/Changes /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Image/Pix/Changes cp OME/SemanticType/BootstrapRepository.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/SemanticType/BootstrapRepository.pm cp SimpleWorkerExecutor.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/SimpleWorkerExecutor.pm cp OME/Web/DBObjRender/__Pixels.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__Pixels.pm cp OME/Web/Util/Dataset.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/Util/Dataset.pm cp OME/Web/CG_Display.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/CG_Display.pm cp OME/ModuleExecution.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/ModuleExecution.pm cp OME/ImportEngine/OMETIFFreader.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/ImportEngine/OMETIFFreader.pm cp OME/Analysis/Modules/Histogram/StackHistogram.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Analysis/Modules/Histogram/StackHistogram.pm cp OME/Web/SaveViewerSettings.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/SaveViewerSettings.pm cp OME/Matlab/Matlab.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Matlab/Matlab.pm cp OME/Install/t/Environment_copyTree_Test1.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Install/t/Environment_copyTree_Test1.pm cp OME/Remote/Prototypes.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Remote/Prototypes.pm cp OME/Tasks/ModuleTasks.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Tasks/ModuleTasks.pm cp OME/Remote/Apache1_99/Transport.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Remote/Apache1_99/Transport.pm cp OME/Analysis/Modules/Tests/FindBounds.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Analysis/Modules/Tests/FindBounds.pm cp OME/Install/t/Environment_scanDir_Test.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Install/t/Environment_scanDir_Test.pm cp OME/Analysis/Engine/README.DISTRIBUTED /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Analysis/Engine/README.DISTRIBUTED cp OME/Tasks/OMEXMLImportExport.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Tasks/OMEXMLImportExport.pm cp OME/Remote/Facades/XMLUtils.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Remote/Facades/XMLUtils.pm cp OME/Util/Annotate/SpreadsheetWriter.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Util/Annotate/SpreadsheetWriter.pm cp OME/ImportExport/ChainExport.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/ImportExport/ChainExport.pm cp OME/Remote/Apache/XMLRPC.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Remote/Apache/XMLRPC.pm cp OME/Tests/SOAP-2.pl /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Tests/SOAP-2.pl cp OME/Task.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Task.pm cp OME/ImportEngine/STKreader.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/ImportEngine/STKreader.pm cp OME/AnalysisChainExecution/NodeExecution.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/AnalysisChainExecution/NodeExecution.pm cp OME/ImportExport/Repacker/Repacker.xs /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/ImportExport/Repacker/Repacker.xs cp OME/Web/DBObjDetail/__OME_Image.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/DBObjDetail/__OME_Image.pm cp showENV.pl /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/showENV.pl cp OME/Remote/Apache1_99.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Remote/Apache1_99.pm cp OME/Web/VisBio.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/VisBio.pm cp OME/Web/CG_ConstructTemplate.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/CG_ConstructTemplate.pm cp OME/Web/Search.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/Search.pm cp OME/Web/TableBrowse/HeaderBuilder.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/TableBrowse/HeaderBuilder.pm cp OME/ImportExport/Repacker/README /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/ImportExport/Repacker/README cp OME/Web/DBObjRender/__OME_Image.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__OME_Image.pm cp OME/Tasks/ImportManager.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Tasks/ImportManager.pm cp OME/Web/DBObjRender/__SamplePreparation.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__SamplePreparation.pm cp OME/Analysis/Modules/Statistics/StackStatistics.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Analysis/Modules/Statistics/StackStatistics.pm cp OME/Web/Ping.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/Ping.pm cp OME/Tasks/ProjectManager.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Tasks/ProjectManager.pm cp OME/Analysis/Modules/Slicers/Channels.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Analysis/Modules/Slicers/Channels.pm cp OME/ImportEngine/BioradReader.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/ImportEngine/BioradReader.pm cp OME/Remote/Facades/ConfigFacade.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Remote/Facades/ConfigFacade.pm cp OME/Web/UploadImage.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/UploadImage.pm cp OME/ImportExport/SemanticTypeImport.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/ImportExport/SemanticTypeImport.pm cp OME/Web/DBObjDetail/__CategoryGroup.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/DBObjDetail/__CategoryGroup.pm cp OME/Tasks/ImageManager.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Tasks/ImageManager.pm cp OME/Analysis/Modules/ROI/ImageROI.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Analysis/Modules/ROI/ImageROI.pm cp OME/Tasks/MultipleSTAnnotationManager.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Tasks/MultipleSTAnnotationManager.pm cp OME/Web/Search/Experimenter.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/Search/Experimenter.pm cp OME/ImportExport/ChainImport.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/ImportExport/ChainImport.pm cp OME/Web/DBObjCreate.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/DBObjCreate.pm cp OME/Web/DefaultMenuBuilder.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/DefaultMenuBuilder.pm cp OME/Web/TrainClassifier.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/TrainClassifier.pm cp OME/ModuleExecution/SemanticTypeOutput.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/ModuleExecution/SemanticTypeOutput.pm cp OME/Image/Pix/typemap /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Image/Pix/typemap cp OME/Analysis/Handlers/CLIHandler.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Analysis/Handlers/CLIHandler.pm cp OME/LookupTable.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/LookupTable.pm cp OME/Util/Annotate.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Util/Annotate.pm cp OME/SemanticType/BootstrapGroup.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/SemanticType/BootstrapGroup.pm cp OME/Configuration.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Configuration.pm cp OME/Factory.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Factory.pm cp OME/ImportExport/SemanticTypeExport.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/ImportExport/SemanticTypeExport.pm cp OME/SemanticType/BootstrapExperimenterGroup.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/SemanticType/BootstrapExperimenterGroup.pm cp OME/Matlab/Makefile.PL /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Matlab/Makefile.PL cp OME/Analysis/Modules/PPM/Gradient.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Analysis/Modules/PPM/Gradient.pm cp OME/ImportEngine/AbstractFormat.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/ImportEngine/AbstractFormat.pm cp OME/AnalysisChain/Node.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/AnalysisChain/Node.pm cp OME/ImportEngine/DICOM.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/ImportEngine/DICOM.pm cp OME/Web/DBObjRender/__ExternalLink.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__ExternalLink.pm cp OME/Web/DBObjRender/__Instrument.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__Instrument.pm cp OME/SemanticType.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/SemanticType.pm cp OME/Analysis/Modules/ROI/Image2DTiledROIs.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Analysis/Modules/ROI/Image2DTiledROIs.pm cp OME/Web/DBObjRender/__OME_Task.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__OME_Task.pm cp OME/Remote.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Remote.pm cp OME/Remote/Apache2/Transport.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Remote/Apache2/Transport.pm cp OME/Tasks/NotificationManager.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Tasks/NotificationManager.pm cp OME/ImportExport/Repacker/Makefile.PL /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/ImportExport/Repacker/Makefile.PL cp OME/Matlab/test.pl /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Matlab/test.pl cp OME/Remote/Apache/HTTPProxy.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Remote/Apache/HTTPProxy.pm cp OME/Remote/Facades/DatasetFacade.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Remote/Facades/DatasetFacade.pm cp OME/Java/SemanticTypeInterface.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Java/SemanticTypeInterface.pm cp OME/Install/ApacheConfigTask.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Install/ApacheConfigTask.pm cp OME/Analysis/Engine/DataPaths.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Analysis/Engine/DataPaths.pm cp OME/Analysis/Modules/Slicers/Planes.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Analysis/Modules/Slicers/Planes.pm cp OME/Web/DBObjRender/__OME_DataTable_Column.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__OME_DataTable_Column.pm cp OME/Tasks/DatasetManager.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Tasks/DatasetManager.pm cp OME/Install/t/Environment_copyTree_Test2.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Install/t/Environment_copyTree_Test2.pm cp OME/Web/Home.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/Home.pm cp OME/Matlab/MANIFEST /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Matlab/MANIFEST cp OME/ImportEngine/XMLreader.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/ImportEngine/XMLreader.pm cp OME/Util/Dev/Lint.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Util/Dev/Lint.pm cp OME/Database/Delegate.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Database/Delegate.pm cp OME/Web/Search/OME_ModuleExecution.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/Search/OME_ModuleExecution.pm cp OME/DataTable/Column.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/DataTable/Column.pm cp OME/ImportExport/Repacker/Repacker.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/ImportExport/Repacker/Repacker.pm cp OME/ModuleExecution/VirtualMEXMap.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/ModuleExecution/VirtualMEXMap.pm cp OME/Util/Admin/Uninstall.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Util/Admin/Uninstall.pm cp OME/ImportExport/Repacker/Changes /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/ImportExport/Repacker/Changes cp OME/Install/MatlabTask.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Install/MatlabTask.pm cp OME/Analysis/Modules/Tests/ImageSignature.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Analysis/Modules/Tests/ImageSignature.pm cp OME/ImportExport/Repacker/test.pl /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/ImportExport/Repacker/test.pl cp OME/Analysis/Modules/Statistics/PlaneStatistics.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Analysis/Modules/Statistics/PlaneStatistics.pm cp OME/Web/MultiObjCreate.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/MultiObjCreate.pm cp OME/Remote/Facades/ChainRetrievalFacade.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Remote/Facades/ChainRetrievalFacade.pm cp OME/Image.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Image.pm cp OME/Tasks/OMEExport.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Tasks/OMEExport.pm cp OME/Web/ImportFiles.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/ImportFiles.pm cp OME/Install/Environment.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Install/Environment.pm cp OME/Remote/Facades/ImportFacade.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Remote/Facades/ImportFacade.pm cp OME/ImportEngine/DICOMconstants.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/ImportEngine/DICOMconstants.pm cp OME/Remote/Facades/SessionFacade.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Remote/Facades/SessionFacade.pm cp OME/Install/t/Environment_copyTree_Test3.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Install/t/Environment_copyTree_Test3.pm cp OME/Module.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Module.pm cp OME/AnalysisChain.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/AnalysisChain.pm cp OME/Remote/DTO.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Remote/DTO.pm cp OME/Web/GuestHeaderBuilder.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/GuestHeaderBuilder.pm cp OME/Web/Search/OME_Project.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/Search/OME_Project.pm cp OME/Project.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Project.pm cp OME/Install/CoreDatabaseTablesTask.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Install/CoreDatabaseTablesTask.pm cp OME/Util/Annotate/SpreadsheetReader.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Util/Annotate/SpreadsheetReader.pm cp OME/Image/Pix/libpix.h /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Image/Pix/libpix.h cp OME/AnalysisPath/Map.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/AnalysisPath/Map.pm cp OME/Remote/Apache2/HTTPProxy.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Remote/Apache2/HTTPProxy.pm cp OME/ImportEngine/TIFFreader.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/ImportEngine/TIFFreader.pm cp OME/Image/Pix/MANIFEST /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Image/Pix/MANIFEST cp OME/Matlab/CompilationREADME /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Matlab/CompilationREADME cp OME/Matlab/compileDynamicLibraries.pl /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Matlab/compileDynamicLibraries.pl cp OME/Web/DBObjCreate/Category.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/DBObjCreate/Category.pm cp OME/Web/DBObjRender/__DevelopmentalStage.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__DevelopmentalStage.pm cp OME/Tests/XMLRPC.pl /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Tests/XMLRPC.pl cp OME/Remote/Apache/Transport.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Remote/Apache/Transport.pm cp OME/Install/Terminal.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Install/Terminal.pm cp OME/Analysis/Modules/Classification/ML_BayesNet_Trainer.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Analysis/Modules/Classification/ML_BayesNet_Trainer.pm cp serve.pl /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/serve.pl cp OME/Tasks/SemanticTypeManager.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Tasks/SemanticTypeManager.pm cp OME/Analysis/Engine.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Analysis/Engine.pm cp OME/Remote/Facades/AnalysisFacade.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Remote/Facades/AnalysisFacade.pm cp OME/DataTable.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/DataTable.pm cp OME/Project/DatasetMap.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Project/DatasetMap.pm cp OME/Util/Data/Delete.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Util/Data/Delete.pm cp OME/Util/Annotate/AnnotationWizards.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Util/Annotate/AnnotationWizards.pm cp OME/Web/DBObjRender/__Experimenter.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__Experimenter.pm cp OME/Analysis/Modules/ROI/Image2DROIs.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Analysis/Modules/ROI/Image2DROIs.pm cp OME/SessionManager.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/SessionManager.pm cp OME/Remote/Apache2.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Remote/Apache2.pm cp OME/Tasks/OMEImport.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Tasks/OMEImport.pm cp OME/Util/OMECommander.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Util/OMECommander.pm cp OME/Remote/Facades/HistoryFacade.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Remote/Facades/HistoryFacade.pm cp OME/ImportEngine/DICOMreader.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/ImportEngine/DICOMreader.pm cp OME/Web/DBObjDetail.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/DBObjDetail.pm cp OME/Analysis/Engine/NonblockingSlaveWorkerCGI.pl /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Analysis/Engine/NonblockingSlaveWorkerCGI.pl cp OME/Web/DBObjRender/__OME_DataTable.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__OME_DataTable.pm cp OME/Tests/SOAP.pl /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Tests/SOAP.pl cp OME/Remote/Apache.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Remote/Apache.pm cp OME/Image/Server.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Image/Server.pm cp OME/Analysis/Modules/Tests/FindRatio.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Analysis/Modules/Tests/FindRatio.pm cp OME/Web/DBObjTable.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/DBObjTable.pm cp OME/Image/Pix/Pix.xs /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Image/Pix/Pix.xs cp OME/Matlab/writeLibraryPackage.pl /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Matlab/writeLibraryPackage.pl cp OME/Analysis/Engine/ForkedPerlExecutor.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Analysis/Engine/ForkedPerlExecutor.pm cp OME/Analysis/Modules/Classification/ML_BayesNet_Classifier.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Analysis/Modules/Classification/ML_BayesNet_Classifier.pm cp OME/Web/MultiObjCreate/ExperimentProtocol.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/MultiObjCreate/ExperimentProtocol.pm cp OME/Matlab/Changes /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Matlab/Changes cp OME/Util/Admin/UserAdmin.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Util/Admin/UserAdmin.pm cp OME/Java/omejava /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Java/omejava cp OME/Image/Server/Pixels.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Image/Server/Pixels.pm cp OME/Web/DBObjRender/__Husbandry.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__Husbandry.pm cp OME/Tests/InteractiveSOAP.pl /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Tests/InteractiveSOAP.pl cp OME/ModuleExecution/ActualInput.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/ModuleExecution/ActualInput.pm cp OME/Web/DBObjRender/__Category.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__Category.pm cp OME/LocalFile.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/LocalFile.pm cp OME/Remote/RPC2.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Remote/RPC2.pm cp OME/Tasks/ModuleExecutionManager.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Tasks/ModuleExecutionManager.pm cp OME/Matlab/typemap /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Matlab/typemap cp OME/SemanticType/BootstrapExperimenter.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/SemanticType/BootstrapExperimenter.pm cp OME/Web/DBObjRender/__OME_Dataset.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/DBObjRender/__OME_Dataset.pm cp OME/ImportEngine/TIFFUtils.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/ImportEngine/TIFFUtils.pm cp OME/Web/FileTable.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/FileTable.pm cp OME/Image/Pix/t/tinyTest.d3d.dv /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Image/Pix/t/tinyTest.d3d.dv cp LogService.pl /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/LogService.pl cp OME/Util/Admin/OMEAdmin.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Util/Admin/OMEAdmin.pm cp OME/Remote/Facades/GenericFacade.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Remote/Facades/GenericFacade.pm cp OME.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME.pm cp OME/Analysis/Handler.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Analysis/Handler.pm cp OME/Module/FormalInput.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Module/FormalInput.pm cp OME/Remote/Facades/ModuleExecutionFacade.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Remote/Facades/ModuleExecutionFacade.pm cp omemodules.pod /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/omemodules.pod cp OME/Web/DBObjDetail/__OME_Project.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/DBObjDetail/__OME_Project.pm cp OME-startup.pl /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME-startup.pl cp OME/Remote/Facade.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Remote/Facade.pm cp OME/Session.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Session.pm cp OME/Remote/Apache1_99/HTTPProxy.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Remote/Apache1_99/HTTPProxy.pm cp OME/Database/PostgresDelegate.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Database/PostgresDelegate.pm cp OME/Remote/DeserializerXMLRPC.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Remote/DeserializerXMLRPC.pm cp OME/Image/Pix/Pix.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Image/Pix/Pix.pm cp newdevelopers.pod /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/newdevelopers.pod cp OME/Util/Dev/ChainStats.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Util/Dev/ChainStats.pm cp OME/Remote/Facades/ModuleRetrievalFacade.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Remote/Facades/ModuleRetrievalFacade.pm cp OME/DBObject.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/DBObject.pm cp OME/Util/Data/Export.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Util/Data/Export.pm cp OME/Analysis/Engine/install_worker_node.pl /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Analysis/Engine/install_worker_node.pl cp OME/Web/DBObjCreate/OME_Project.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/DBObjCreate/OME_Project.pm cp OME/ImportEngine/DVreader.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/ImportEngine/DVreader.pm cp OME/Image/Server/File.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Image/Server/File.pm cp OME/Image/Pix/Makefile.PL /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Image/Pix/Makefile.PL cp OME/Web/DBObjDetail/__Category.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Web/DBObjDetail/__Category.pm make[1]: Entering directory `/home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/Image/Pix' cp Pix.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/OME/Image/Pix.pm /usr/bin/perl /usr/lib/perl5/5.8.6/ExtUtils/xsubpp -typemap /usr/lib/perl5/5.8.6/ExtUtils/typemap -typemap typemap Pix.xs > Pix.xsc && mv Pix.xsc Pix.c gcc -c -I/sw/include -D_REENTRANT -D_GNU_SOURCE -DDEBUGGING -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include/gdbm -O2 -g -pipe -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -m32 -march=i386 -mtune=pentium4 -fasynchronous-unwind-tables -DVERSION=\"2.007\" -DXS_VERSION=\"2.007\" -fPIC "-I/usr/lib/perl5/5.8.6/i386-linux-thread-multi/CORE" Pix.c gcc -c -I/sw/include -D_REENTRANT -D_GNU_SOURCE -DDEBUGGING -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include/gdbm -O2 -g -pipe -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -m32 -march=i386 -mtune=pentium4 -fasynchronous-unwind-tables -DVERSION=\"2.007\" -DXS_VERSION=\"2.007\" -fPIC "-I/usr/lib/perl5/5.8.6/i386-linux-thread-multi/CORE" libpix.c libpix.c: In function ‘TIFF2Plane’: libpix.c:556: warning: pointer targets in passing argument 2 of ‘SetPlane’ differ in signedness libpix.c: In function ‘ScaleBuf8’: libpix.c:594: warning: pointer targets in return differ in signedness Running Mkbootstrap for OME::Image::Pix () chmod 644 Pix.bs rm -f /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/arch/auto/OME/Image/Pix/Pix.so gcc -shared -L/usr/local/lib Pix.o libpix.o -o /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/arch/auto/OME/Image/Pix/Pix.so -L/usr/local/lib -ltiff chmod 755 /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/arch/auto/OME/Image/Pix/Pix.so cp Pix.bs /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/arch/auto/OME/Image/Pix/Pix.bs chmod 644 /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/arch/auto/OME/Image/Pix/Pix.bs Manifying /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/man3/OME::Image::Pix.3pm make[1]: Leaving directory `/home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/Image/Pix' make[1]: Entering directory `/home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportExport/Repacker' cp Repacker.pm /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/lib/Repacker.pm /usr/bin/perl /usr/lib/perl5/5.8.6/ExtUtils/xsubpp -typemap /usr/lib/perl5/5.8.6/ExtUtils/typemap Repacker.xs > Repacker.xsc && mv Repacker.xsc Repacker.c gcc -c -D_REENTRANT -D_GNU_SOURCE -DDEBUGGING -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include/gdbm -O2 -g -pipe -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -m32 -march=i386 -mtune=pentium4 -fasynchronous-unwind-tables -DVERSION=\"2.007\" -DXS_VERSION=\"2.007\" -fPIC "-I/usr/lib/perl5/5.8.6/i386-linux-thread-multi/CORE" Repacker.c Repacker.xs: In function ‘XS_Repacker_invert’: Repacker.xs:140: warning: pointer targets in passing argument 3 of ‘Perl_sv_2pv_flags’ differ in signedness Repacker.xs:140: warning: pointer targets in initialization differ in signedness Repacker.xs: In function ‘XS_Repacker_gel_scaler’: Repacker.xs:184: warning: pointer targets in passing argument 3 of ‘Perl_sv_2pv_flags’ differ in signedness Running Mkbootstrap for Repacker () chmod 644 Repacker.bs rm -f /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/arch/auto/Repacker/Repacker.so gcc -shared -L/usr/local/lib Repacker.o -o /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/arch/auto/Repacker/Repacker.so chmod 755 /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/arch/auto/Repacker/Repacker.so cp Repacker.bs /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/arch/auto/Repacker/Repacker.bs chmod 644 /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/arch/auto/Repacker/Repacker.bs Manifying /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/man3/Repacker.3pm make[1]: Leaving directory `/home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportExport/Repacker' cp OME/Java/omejava /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/script/omejava /usr/bin/perl "-MExtUtils::MY" -e "MY->fixin(shift)" /home/bernd/allOMEs/06_08_18/OME/src/perl2/blib/script/omejava " INSTALLING MODULE -- 'make install' SUCCESS -- OUTPUT: "make[1]: Entering directory `/home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/Image/Pix' make[1]: Leaving directory `/home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/Image/Pix' make[1]: Entering directory `/home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportExport/Repacker' make[1]: Leaving directory `/home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/ImportExport/Repacker' Installing /usr/lib/perl5/site_perl/5.8.6/OME/Web.pm Installing /usr/lib/perl5/site_perl/5.8.6/OME/SessionManager.pm Installing /usr/lib/perl5/site_perl/5.8.6/OME/Install/CoreDatabaseTablesTask.pm Installing /usr/lib/perl5/site_perl/5.8.6/OME/Install/PerlModuleTask.pm Installing /usr/lib/perl5/site_perl/5.8.6/OME/Web/Login.pm Installing /usr/lib/perl5/site_perl/5.8.6/OME/Util/Import.pm Installing /usr/lib/perl5/site_perl/5.8.6/OME/Util/Dev/Classifier.pm Writing /usr/lib/perl5/site_perl/5.8.6/i386-linux-thread-multi/auto/OME/.packlist Appending installation info to /usr/lib/perl5/5.8.6/i386-linux-thread-multi/perllocal.pod "