[ome-users] Bio-Formats ND2 importer bug

Paul-Gilloteaux Perrine Perrine.Paul-Gilloteaux at curie.fr
Thu Feb 8 14:30:53 GMT 2018


Dear Bio-Formats team,

Im also reporting a bug on nd2 with bioformat (tested on last release 5.7.3 snapshot and previous)

Disabling the chunkmap option does not solve the problem.

I ve uploaded a short example data set here: https://www.openmicroscopy.org/qa2/qa/feedback/20512/?token=1f4ad9c32a8ea3de4f0c34d2c4add35c

In a few words (see my comments on the link above), time and positions are shuffled, while NIS element correcty read the file metadata.

Series corresponds to time when it should be position, and time to what should be position.
It only happens when there is several channels (no problem if the movie is 1 channel multi-t, multi pos)
It only happens with acquisitions generated with the last version of NIS 4.5.0.00 (but read correctly by previous version of NIS element).
Best regards,
Perrine
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