[ome-users] OMERO pyramid creation

[Kai Schleicher]

Hi,

first, even though its already a bit in the past: Thanks for the great 
OME meeting! I was happy to meet everyone and see all the new and 
amazing things to come :)

second, thanks for the freshly installed 5.3.2 OMERO demo server! For 
testing I have uploaded some jpegXR compressed multi-sceen BF and FL 
images of our AxioScan slidescanner (*czi), which uploaded with no issue 
(dataset ID 17 
<https://demo.openmicroscopy.org/webclient/?show=dataset-17>, example 
image ID 576 <https://demo.openmicroscopy.org/webclient/?show=image-576> ).

I noticed however that the OMERO sever spends some time calculating a 
pyramid for my images.

Since these images already contained pyramids that where calculated by 
Zen after acquisition, do you think it would be possible to skip pyramid 
creation on the OMERO server side and use the ones provided in the czi 
instead?

While I could confirm that FIJI/Bio-formats recognises the pyramids in 
those images, I don't really know if they are on the same zoom-level 
that OMERO expects/ likes to use.

Let me know if you wish to have the example images uploaded somewhere 
else other than your demo server :)

Thanks and cheers,
Kai

-- 
>>Please note my NEW PHONE NUMBERS: +41 61 207 57 31 (direct) +41 61 207 22 50 (central)<<
Kai Schleicher, PhD | Research Associate in Advanced Light Microscopy | Biozentrum, University of Basel | Klingelbergstrasse 50/70 | CH-4056 Basel |
Phone: +41 61 207 57 31 (direct) +41 61 207 22 50 (central) | kai.schleicher at unibas.ch | www.biozentrum.unibas.ch | www.microscopynetwork.unibas.ch

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