[ome-users] Bioformats Import Error

Tetley, Rob r.tetley at ucl.ac.uk
Thu Jul 14 16:53:57 BST 2016


I've been getting the following error message when I try and load an image series of multiple TIFF files via the Bioformats Importer in FIJI (I have checked for updates are there are none). Any help greatly appreciated.


Cheers,


Rob


Reading IFDs
Populating metadata
Populating OME metadata
There was a problem with the class loci.common.DateTools which can be found here:
/D:/MOVEDF~1/Fiji.app/jars/bio-formats/formats-common-5.1.0.jar
java.lang.NoSuchMethodError: loci.common.DateTools.formatDate(Ljava/lang/String;[Ljava/lang/String;Ljava/lang/String;)Ljava/lang/String;
    at loci.formats.in.BaseTiffReader.initMetadataStore(BaseTiffReader.java:430)
    at loci.formats.in.FluoviewReader.initMetadataStore(FluoviewReader.java:433)
    at loci.formats.in.BaseTiffReader.initMetadata(BaseTiffReader.java:99)
    at loci.formats.in.BaseTiffReader.initFile(BaseTiffReader.java:577)
    at loci.formats.FormatReader.setId(FormatReader.java:1395)
    at loci.plugins.in.ImportProcess.initializeFile(ImportProcess.java:505)
    at loci.plugins.in.ImportProcess.execute(ImportProcess.java:143)
    at loci.plugins.in.Importer.showDialogs(Importer.java:140)
    at loci.plugins.in.Importer.run(Importer.java:76)
    at loci.plugins.LociImporter.run(LociImporter.java:78)
    at ij.IJ.runUserPlugIn(IJ.java:216)
    at ij.IJ.runPlugIn(IJ.java:180)
    at ij.Executer.runCommand(Executer.java:137)
    at ij.Executer.run(Executer.java:66)
    at java.lang.Thread.run(Thread.java:662)

java.lang.NoSuchMethodException: Could not find method loci.common.DateTools.formatDate(Ljava/lang/String;[Ljava/lang/String;Ljava/lang/String;)Ljava/lang/String;
There was a problem with the class loci.common.DateTools which can be found here:
/D:/MOVEDF~1/Fiji.app/jars/bio-formats/formats-common-5.1.0.jar
java.lang.NoSuchMethodError: loci.common.DateTools.formatDate(Ljava/lang/String;[Ljava/lang/String;Ljava/lang/String;)Ljava/lang/String;
    at loci.formats.in.BaseTiffReader.initMetadataStore(BaseTiffReader.java:430)
    at loci.formats.in.FluoviewReader.initMetadataStore(FluoviewReader.java:433)
    at loci.formats.in.BaseTiffReader.initMetadata(BaseTiffReader.java:99)
    at loci.formats.in.BaseTiffReader.initFile(BaseTiffReader.java:577)
    at loci.formats.FormatReader.setId(FormatReader.java:1395)
    at loci.plugins.in.ImportProcess.initializeFile(ImportProcess.java:505)
    at loci.plugins.in.ImportProcess.execute(ImportProcess.java:143)
    at loci.plugins.in.Importer.showDialogs(Importer.java:140)
    at loci.plugins.in.Importer.run(Importer.java:76)
    at loci.plugins.LociImporter.run(LociImporter.java:78)
    at ij.IJ.runUserPlugIn(IJ.java:216)
    at ij.IJ.runPlugIn(IJ.java:180)
    at ij.Executer.runCommand(Executer.java:137)
    at ij.Executer.run(Executer.java:66)
    at java.lang.Thread.run(Thread.java:662)

    at loci.formats.in.BaseTiffReader.initMetadataStore(BaseTiffReader.java:430)
    at loci.formats.in.FluoviewReader.initMetadataStore(FluoviewReader.java:433)
    at loci.formats.in.BaseTiffReader.initMetadata(BaseTiffReader.java:99)
    at loci.formats.in.BaseTiffReader.initFile(BaseTiffReader.java:577)
    at loci.formats.FormatReader.setId(FormatReader.java:1395)
    at loci.plugins.in.ImportProcess.initializeFile(ImportProcess.java:505)
    at loci.plugins.in.ImportProcess.execute(ImportProcess.java:143)
    at loci.plugins.in.Importer.showDialogs(Importer.java:140)
    at loci.plugins.in.Importer.run(Importer.java:76)
    at loci.plugins.LociImporter.run(LociImporter.java:78)
    at ij.IJ.runUserPlugIn(IJ.java:216)
    at ij.IJ.runPlugIn(IJ.java:180)
    at ij.Executer.runCommand(Executer.java:137)
    at ij.Executer.run(Executer.java:66)
    at java.lang.Thread.run(Thread.java:662)

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.openmicroscopy.org.uk/pipermail/ome-users/attachments/20160714/30286966/attachment.html>


More information about the ome-users mailing list