[ome-users] Question about Matlab Bio-Formats

[Sebastien Besson (Staff)]

Hi Qi,

thanks for your feedback.
The stack trace attached to your email suggests you are using
Bio-Formats 5.0.8 or earlier. Your error is very similar to the
one reported in http://trac.openmicroscopy.org.uk/ome/ticket/12367.

The latter issue has been fixed in the 5.1.0 release of Bio-Formats.
Could you try upgrading your version of Bio-Formats MATLAB to this
release as described in
https://www.openmicroscopy.org/site/support/bio-formats5.1/users/matlab/index.html#upgrading
and try accessing the WSI tile again? Let us know if this resolves the
issue.

Best regards,
Sebastien

> On 14 Apr 2015, at 18:19, Qi Gong <qigong at gwmail.gwu.edu> wrote:
>
> Hello everyone,
>
> Sorry for bother. I have a question about Matlab Bio-formats. I want to use bfGetPlane function to extract a area for WSI. But I face a problem as attachment. I believe I choose a area inside the image, But it shows error.
>
> If I change
> I=bfGetPlane(reader,2,3179,79516,454,454); to
> I=bfGetPlane(reader,2,3179,40000,454,454);
>
> It could work. But I think 79516 is inside the image as  reader.getSizeY() =  93184.
> Does anyone know why this happen? Thank you.
>
> Sincerely,
> Qi
> --
> mobile phone: 2024060862
> <problem.png>_______________________________________________
> ome-users mailing list
> ome-users at lists.openmicroscopy.org.uk
> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users


The University of Dundee is a registered Scottish Charity, No: SC015096