[ome-users] Unable to run scripts - no processors available
John Webber (NBI)
John.Webber at nbi.ac.uk
Tue Oct 8 17:43:41 BST 2013
All,
When I attempt to run a script on a new Omer server I have recently built, I see an error that states:
Cannot load the script: <id>
Error: "No processor available!"
I have stopped, disabled, re-enabled and restarted the "Processor-0", using the commands:
bin/omero admin ice "server <cmd> Processor-0"
(where <cmd> is stop, disable, enable and start)
Please can anyone give me some advice as to why my scripts do not seem to be working?
I have checked for python and pytables on my server, and running the admin diagnostics shows the following:
================================================================================
OMERO Diagnostics 4.4.8p1-ice33-b304
================================================================================
Commands: java -version 1.7.0 (/usr/bin/java)
Commands: python -V 2.4.3 (/usr/bin/python)
Commands: icegridnode --version 3.3.1 (/usr/bin/icegridnode)
Commands: icegridadmin --version 3.3.1 (/usr/bin/icegridadmin)
Commands: psql --version 8.4.13 (/usr/bin/psql)
Server: icegridnode running
Server: Blitz-0 active (pid = 3331, enabled)
Server: DropBox active (pid = 3342, enabled)
Server: FileServer active (pid = 3333, enabled)
Server: Indexer-0 active (pid = 3334, enabled)
Server: MonitorServer active (pid = 3343, enabled)
Server: OMERO.Glacier2 active (pid = 3337, enabled)
Server: OMERO.IceStorm active (pid = 3344, enabled)
Server: PixelData-0 active (pid = 3353, enabled)
Server: Processor-0 active (pid = 3354, enabled)
Server: Tables-0 active (pid = 3341, enabled)
Server: TestDropBox inactive (enabled)
OMERO: SSL port 4064
OMERO: TCP port 4063
Log dir: /opt/OMERO.server-4.4.8p1-ice33-b304/var/log exists
Log files: Blitz-0.log 17.0 MB errors=12 warnings=64
Log files: DropBox.log 23.0 KB errors=8 warnings=10
Log files: FileServer.log 2.0 KB
Log files: Indexer-0.log 31.0 MB errors=54 warnings=64
Log files: MonitorServer.log 9.0 KB errors=0 warnings=1
Log files: OMEROweb.log 0.0 KB
Log files: OMEROweb_request.log 0.0 KB
Log files: PixelData-0.log 266.0 KB errors=54 warnings=115
Log files: Processor-0.log 1.0 KB
Log files: Tables-0.log 0.0 KB
Log files: TestDropBox.log n/a
Log files: master.err 21.0 KB
Log files: master.out 0.0 KB
Log files: Total size 48.90 MB
Parsing Blitz-0.log:[line:119] => Server restarted <=
Parsing Blitz-0.log:[line:418] => Server restarted <=
Parsing Blitz-0.log:[line:90500] => Server restarted <=
Parsing Blitz-0.log:[line:90636] => Server restarted <=
Parsing Blitz-0.log:[line:90766] => Server restarted <=
Parsing Blitz-0.log:[line:91053] => Server restarted <=
Parsing Blitz-0.log:[line:98690] => Server restarted <=
Parsing Blitz-0.log:[line:111055] Your postgres hostname and/or port is invalid
Parsing Blitz-0.log:[line:111166] Your postgres hostname and/or port is invalid
Parsing Blitz-0.log:[line:111277] Your postgres hostname and/or port is invalid
Parsing Blitz-0.log:[line:111510] => Server restarted <=
Environment:OMERO_HOME=(unset)
Environment:OMERO_NODE=(unset)
Environment:OMERO_MASTER=(unset)
Environment:PATH=/usr/kerberos/bin:/usr/local/bin:/bin:/usr/bin:/home/omero/bin
Environment:ICE_HOME=(unset)
Environment:LD_LIBRARY_PATH=(unset)
Environment:DYLD_LIBRARY_PATH=(unset)
OMERO data dir: '/OMERO' Exists? True Is writable? True
OMERO.web status... [RUNNING] (PID 3760)
Checking for the scripts on the server itself, I see:
[omero at v0362 Omero]$ bin/omero script list
Previously logged in to localhost:4064 as root
Server: [localhost]
Username: [root]
Password:
Created session 4b0e346b-c123-49ea-891c-21270decc28f (root at localhost:4064). Idle timeout: 10.0 min. Current group: system
id | Official scripts
----+-----------------------------------------------
1 | /omero/setup_scripts/FLIM_initialise.py
2 | /omero/analysis_scripts/Plot_Profile.py
3 | /omero/analysis_scripts/Kymograph_Analysis.py
4 | /omero/analysis_scripts/Kymograph.py
5 | /omero/util_scripts/Images_From_ROIs.py
6 | /omero/util_scripts/Dataset_To_Plate.py
7 | /omero/util_scripts/Combine_Images.py
8 | /omero/util_scripts/Channel_Offsets.py
9 | /omero/import_scripts/Populate_ROI.py
10 | /omero/figure_scripts/Movie_Figure.py
11 | /omero/figure_scripts/ROI_Split_Figure.py
12 | /omero/figure_scripts/Thumbnail_Figure.py
13 | /omero/figure_scripts/Split_View_Figure.py
14 | /omero/figure_scripts/Movie_ROI_Figure.py
15 | /omero/export_scripts/Batch_Image_Export.py
16 | /omero/export_scripts/Make_Movie.py
(16 rows)
[omero at v0362 Omero]$
Thanks
John
--------------------------------------------------------------------------------------------------------------------------------------------
John Webber
Computing and Information Services
NBI Partnership Ltd
Norwich Research park
Colney Lane
Norwich
NR4 7UH
E-Mail: john.webber at nbi.ac.uk<mailto:john.webber at nbi.ac.uk>
Web: http://www.nbi.ac.uk<http://www.nbi.ac.uk/>
Tel: +44(0)1603 450 818
Helpdesk (Tel): 1234 HPC Support (Web): http://hpc.nbi.ac.uk<http://hpc.nbi.ac.uk/> (NBI internal)
HPC Support (Tel): 2003 (NBI internal)
The NBI Partnership Ltd provides non-scientific services to the Institute of Food Research, the John Innes Centre, The Genome Analysis Centre and The Sainsbury Laboratory
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